PRGDB00061525 (disease resistance protein)

disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	227438210 (FJ842814)
Gene Class	TNL
Domain Type	NBS, TIR, LRR, Others
Gene Species	Brassica rapa subsp. pekinensis
	Comment?

Brassica rapa subsp. pekinensis isolate BrTN10 disease resistance protein gene, complete cds.

DNA Sequence

ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTAGCAACGGGAGATACCATGTTTTCCCCAGCTTCCGTGGAGAAGATGTCCGCAACTCATTCCTAAGCCATCTCATGGAGCTTGAACGCAACTTGATCACTACATTCATCGACCATGGCATCGACAGAAGCCGCCCTATCGGATCCGAGCTTTTATTGGCGATAAAAGAATCGAGAATAGCGATCGTCATCTTCTCTAAGAACTACGCCTCGTCAACATGGTGTTTGAACGAACTGGTGGAGATCCACAAGTGCTTTAAGGATCTGAATCAGATGGTGATACCAATTTTTTACCATGTCGATCCTTCTGATGTTAGAAAGCAGACCGGGGAATTCGGCGATAGGTTTAAAGAAATTTGCATGGACAAAACAGAAGATGAGATAGAAAGGTTGGTTCGAGCACTAACGGATGTAGCAAATTTGGCCGGACAGGATTCCAAGAATTGGATCGGTGAAGGCGAAGCAAAAATGATTGAACATATAGCTAAGGATGTGTTCAACAAAGTTATGATACCATCAAACGATTTTAGCGACTTTGTGGGGATTGAAGCTCATTTTCAGAGGTTGAATAATCTTTTGTGTTTGGAGTCTGAGGAGGTTAGAAAGGTAGGAATTTGGGGCCCTTCAGGGATAGGTAAGAGTACCATAGGAAGAGTTCTTTTTAGTCAACTCTCTAGCCGATTCCACCACCATGCTTTTGTCTCTTACAAGAGTACAAAACAGTGGGATGACTATAGCATGAAGTTGTCTTTGGATGAACGACTTCTGTCGGAAATTTCATGTCAAAAGGACCTAAAGATATCCCATTTAGGTGTAGTGAAACAAATGCTAAACCACAAGAAAGTTCTTATCATCGTTGATGATGTGGATGATCTTGAAGTGCTAAACACCTTCATGGATCAAACTCGTTTGGTTGGATCCGGGAGCAGAATCATTGTGATAACTCAAGATAGGAAACTTTTAAAGTCTCAAGAGATTGAGCTTATTTATGAGGTCGAGCTCCCATCGTACGATCTGGCTATACAAATGTTCTGTCGATATGCGTTTGGGAAAAACTCTCCGCCTTATGGTTTCGAAGAACTCACGGAGGAAGTTGCATTGCATTCAAGTAATCTCCCTTTAGGTCTAAGTGTCTTGGGTTCGTCTTTGAAAGGAATGACGAAGGAGGAGTGGGTGGAGATGCTGCCTAGGCTCTTGAATAGTTTGGATGGGAAAATCAAGAATACACTAAAAGTTTGCTATGATAGGTTAGATGTCAAAGAGCAAGAATTGTTCCTTTGGATTGCATGCCTATCCGATGGTCCTAACGTCAGTTTCTTAAAAGACTTGCTTGGAGATAGTGCTGAAATTGGGCTCAAAATACTGAATGACAAGTCCCTAATACGTAGGGAATCAACAGAATTTGTTCGAATGCACAGTTTGTTACAGAAGTTGGGTAAAGAAATCAATCGTGCAGATCCCATCAACAACCGTAGGTTCTTGACGGAAGCTGAGAGGATATATGTGATGTACTTACCGATAATGCTTCTCAAGAGATTGAGCTTATTTATGAGGTCGAGCTCCCATCGTACGATCTGGCTATACAAATGTTCTGTCGATATGCGTTTGGGAAAAACTCTCCNCCNTTATGGTTTCGAAGAACTCACGGAGGAAGTTGCATTGCATTCAAGTAATCTCCCTTTAGGTCTAAGTGTCTTGGGTTCGTCTTTGAAAGGAATGACGAAGGAGGAGTGGGTGGAGATGCTGCCTAGGCTCTTGAATAGTTTGGATGGGAAAATCAAGAATACACTAAAAGTTTGCTATGATAGGTTAGATGTCAAAGAGCAAGAATTGTTCCTTTGGATTGCATGCCTATCCGATGGTCCTAACGTCAGTTTCTTAAAAGACTTGCTTGGAGATAGTGCTGAAATTGGGCTCAAAATACTGAATGACAAGTCCCTAATACGTAGGGAATCAACAGAATTTGTTCGAATGCACAGTTTGTTACAGAAGTTGGGTAAAGAAATCAATCGTGCAGATCCCATCAACAACCGTAGGTTCTTGACGGAAGCTGAGAGGATATATGTGATGTACTTACCGATAATGCTGGATTGTTAA

Protein sequences

Name	Description	Sequence
disease resistance protein	disease resistance protein [Brassica rapa subsp. pekinensis].	MASSSSSSSSSNGRYHVFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANLAGQDSKNWIGEGEAKMIEHIAKDVFNKVMIPSNDFSDFVGIEAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPSYDLAIQMFCRYAFGKNSPPYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVMYLPIMLLKRLSLFMRSSSHRTIWLYKCSVDMRLGKTLXXYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVMYLPIMLDC

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52200 IPR000157	3-153	TIR Toll-Interleukin receptor	SSSSSSSSSNGRYHVFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANLAGQ
Gene3D: G3DSA:3.40.50.10140	11-141	G3DSA:3.40.50.10140	SNGRYHVFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLV
ProfileScan: PS50104 IPR000157	13-150	TIR Toll-Interleukin receptor	GRYHVFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANL
HMMSmart: SM00255 IPR000157	14-150	TIR Toll-Interleukin receptor	RYHVFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANL
HMMPfam: PF01582 IPR000157	17-144	TIR Toll-Interleukin receptor	VFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRAL
HMMPanther: PTHR11017	37-512	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	LERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANLAGQDSKNWIGEGEAKMIEHIAKDVFNKVMIPSNDFSDFVGIEAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPSYDLAIQMFCRYAFGKNSPPYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVM
HMMPanther: PTHR11017:SF20	37-512	PTHR11017:SF20,SUBFAMILY NOT NAMED	LERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANLAGQDSKNWIGEGEAKMIEHIAKDVFNKVMIPSNDFSDFVGIEAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPSYDLAIQMFCRYAFGKNSPPYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVM
superfamily: SSF52540	67-435	SSF52540	SRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANLAGQDSKNWIGEGEAKMIEHIAKDVFNKVMIPSNDFSDFVGIEAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPSYDLAIQMFCRYAFGKNSPPYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFL
Gene3D: G3DSA:3.40.50.300	182-330	G3DSA:3.40.50.300	SNDFSDFVGIEAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLL
HMMPfam: PF00931 IPR002182	192-442	NB-ARC,NBS NB-ARC	EAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPSYDLAIQMFCRYAFGKNSPPYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFLWIACLSD
HMMSmart: SM00382 IPR003593	208-345	AAA,NBS ATPase, AAA+ type, core	EVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPS
FPrintScan: PR00364 IPR000767	211-226	DISEASERSIST Disease resistance protein	KVGIWGPSGIGKSTIG
FPrintScan: PR00364 IPR000767	285-299	DISEASERSIST Disease resistance protein	MLNHKKVLIIVDDVD
FPrintScan: PR00364 IPR000767	378-392	DISEASERSIST Disease resistance protein	SSNLPLGLSVLGSSL
superfamily: SSF46785	413-520	SSF46785	GKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVMYLPIMLLK
superfamily: SSF46785	600-700	SSF46785	GKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVMY

List of References

Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736 WorldCat.org DOI (I p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show