PRGDB00061525 (disease resistance protein)

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disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 227438210 (FJ842814)
Gene Class TNL
Domain Type NBS, TIR, LRR, Others
Gene Species Brassica rapa subsp. pekinensis

Comment?

Brassica rapa subsp. pekinensis isolate BrTN10 disease resistance protein gene, complete cds.

DNA Sequence

ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTAGCAACGGGAGATACCATGTTTTCCCCAGCTTCCGTGGAGAAGATGTCCGCAACTCATTCCTAAGCCATCTCATGGAGCTTGAACGCAACTTGATCACTACATTCATCGACCATGGCATCGACAGAAGCCGCCCTATCGGATCCGAGCTTTTATTGGCGATAAAAGAATCGAGAATAGCGATCGTCATCTTCTCTAAGAACTACGCCTCGTCAACATGGTGTTTGAACGAACTGGTGGAGATCCACAAGTGCTTTAAGGATCTGAATCAGATGGTGATACCAATTTTTTACCATGTCGATCCTTCTGATGTTAGAAAGCAGACCGGGGAATTCGGCGATAGGTTTAAAGAAATTTGCATGGACAAAACAGAAGATGAGATAGAAAGGTTGGTTCGAGCACTAACGGATGTAGCAAATTTGGCCGGACAGGATTCCAAGAATTGGATCGGTGAAGGCGAAGCAAAAATGATTGAACATATAGCTAAGGATGTGTTCAACAAAGTTATGATACCATCAAACGATTTTAGCGACTTTGTGGGGATTGAAGCTCATTTTCAGAGGTTGAATAATCTTTTGTGTTTGGAGTCTGAGGAGGTTAGAAAGGTAGGAATTTGGGGCCCTTCAGGGATAGGTAAGAGTACCATAGGAAGAGTTCTTTTTAGTCAACTCTCTAGCCGATTCCACCACCATGCTTTTGTCTCTTACAAGAGTACAAAACAGTGGGATGACTATAGCATGAAGTTGTCTTTGGATGAACGACTTCTGTCGGAAATTTCATGTCAAAAGGACCTAAAGATATCCCATTTAGGTGTAGTGAAACAAATGCTAAACCACAAGAAAGTTCTTATCATCGTTGATGATGTGGATGATCTTGAAGTGCTAAACACCTTCATGGATCAAACTCGTTTGGTTGGATCCGGGAGCAGAATCATTGTGATAACTCAAGATAGGAAACTTTTAAAGTCTCAAGAGATTGAGCTTATTTATGAGGTCGAGCTCCCATCGTACGATCTGGCTATACAAATGTTCTGTCGATATGCGTTTGGGAAAAACTCTCCGCCTTATGGTTTCGAAGAACTCACGGAGGAAGTTGCATTGCATTCAAGTAATCTCCCTTTAGGTCTAAGTGTCTTGGGTTCGTCTTTGAAAGGAATGACGAAGGAGGAGTGGGTGGAGATGCTGCCTAGGCTCTTGAATAGTTTGGATGGGAAAATCAAGAATACACTAAAAGTTTGCTATGATAGGTTAGATGTCAAAGAGCAAGAATTGTTCCTTTGGATTGCATGCCTATCCGATGGTCCTAACGTCAGTTTCTTAAAAGACTTGCTTGGAGATAGTGCTGAAATTGGGCTCAAAATACTGAATGACAAGTCCCTAATACGTAGGGAATCAACAGAATTTGTTCGAATGCACAGTTTGTTACAGAAGTTGGGTAAAGAAATCAATCGTGCAGATCCCATCAACAACCGTAGGTTCTTGACGGAAGCTGAGAGGATATATGTGATGTACTTACCGATAATGCTTCTCAAGAGATTGAGCTTATTTATGAGGTCGAGCTCCCATCGTACGATCTGGCTATACAAATGTTCTGTCGATATGCGTTTGGGAAAAACTCTCCNCCNTTATGGTTTCGAAGAACTCACGGAGGAAGTTGCATTGCATTCAAGTAATCTCCCTTTAGGTCTAAGTGTCTTGGGTTCGTCTTTGAAAGGAATGACGAAGGAGGAGTGGGTGGAGATGCTGCCTAGGCTCTTGAATAGTTTGGATGGGAAAATCAAGAATACACTAAAAGTTTGCTATGATAGGTTAGATGTCAAAGAGCAAGAATTGTTCCTTTGGATTGCATGCCTATCCGATGGTCCTAACGTCAGTTTCTTAAAAGACTTGCTTGGAGATAGTGCTGAAATTGGGCTCAAAATACTGAATGACAAGTCCCTAATACGTAGGGAATCAACAGAATTTGTTCGAATGCACAGTTTGTTACAGAAGTTGGGTAAAGAAATCAATCGTGCAGATCCCATCAACAACCGTAGGTTCTTGACGGAAGCTGAGAGGATATATGTGATGTACTTACCGATAATGCTGGATTGTTAA


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Brassica rapa subsp. pekinensis].

MASSSSSSSSSNGRYHVFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANLAGQDSKNWIGEGEAKMIEHIAKDVFNKVMIPSNDFSDFVGIEAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPSYDLAIQMFCRYAFGKNSPPYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVMYLPIMLLKRLSLFMRSSSHRTIWLYKCSVDMRLGKTLXXYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVMYLPIMLDC

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
3-153 TIR
Toll-Interleukin receptor

SSSSSSSSSNGRYHVFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANLAGQ

Gene3D: G3DSA:3.40.50.10140
11-141 G3DSA:3.40.50.10140

SNGRYHVFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLV

ProfileScan: PS50104
IPR000157
13-150 TIR
Toll-Interleukin receptor

GRYHVFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANL

HMMSmart: SM00255
IPR000157
14-150 TIR
Toll-Interleukin receptor

RYHVFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANL

HMMPfam: PF01582
IPR000157
17-144 TIR
Toll-Interleukin receptor

VFPSFRGEDVRNSFLSHLMELERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRAL

HMMPanther: PTHR11017
37-512 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANLAGQDSKNWIGEGEAKMIEHIAKDVFNKVMIPSNDFSDFVGIEAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPSYDLAIQMFCRYAFGKNSPPYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVM

HMMPanther: PTHR11017:SF20
37-512 PTHR11017:SF20,SUBFAMILY NOT NAMED

LERNLITTFIDHGIDRSRPIGSELLLAIKESRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANLAGQDSKNWIGEGEAKMIEHIAKDVFNKVMIPSNDFSDFVGIEAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPSYDLAIQMFCRYAFGKNSPPYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVM

superfamily: SSF52540
67-435 SSF52540

SRIAIVIFSKNYASSTWCLNELVEIHKCFKDLNQMVIPIFYHVDPSDVRKQTGEFGDRFKEICMDKTEDEIERLVRALTDVANLAGQDSKNWIGEGEAKMIEHIAKDVFNKVMIPSNDFSDFVGIEAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPSYDLAIQMFCRYAFGKNSPPYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFL

Gene3D: G3DSA:3.40.50.300
182-330 G3DSA:3.40.50.300

SNDFSDFVGIEAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLL

HMMPfam: PF00931
IPR002182
192-442 NB-ARC,NBS
NB-ARC

EAHFQRLNNLLCLESEEVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPSYDLAIQMFCRYAFGKNSPPYGFEELTEEVALHSSNLPLGLSVLGSSLKGMTKEEWVEMLPRLLNSLDGKIKNTLKVCYDRLDVKEQELFLWIACLSD

HMMSmart: SM00382
IPR003593
208-345 AAA,NBS
ATPase, AAA+ type, core

EVRKVGIWGPSGIGKSTIGRVLFSQLSSRFHHHAFVSYKSTKQWDDYSMKLSLDERLLSEISCQKDLKISHLGVVKQMLNHKKVLIIVDDVDDLEVLNTFMDQTRLVGSGSRIIVITQDRKLLKSQEIELIYEVELPS

FPrintScan: PR00364
IPR000767
211-226 DISEASERSIST
Disease resistance protein

KVGIWGPSGIGKSTIG

FPrintScan: PR00364
IPR000767
285-299 DISEASERSIST
Disease resistance protein

MLNHKKVLIIVDDVD

FPrintScan: PR00364
IPR000767
378-392 DISEASERSIST
Disease resistance protein

SSNLPLGLSVLGSSL

superfamily: SSF46785
413-520 SSF46785

GKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVMYLPIMLLK

superfamily: SSF46785
600-700 SSF46785

GKIKNTLKVCYDRLDVKEQELFLWIACLSDGPNVSFLKDLLGDSAEIGLKILNDKSLIRRESTEFVRMHSLLQKLGKEINRADPINNRRFLTEAERIYVMY


List of References

Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736 WorldCat.org DOI (I p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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