PRGDB00061530 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438200 (FJ842809) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGAAGTTCGATGTATTCCTCAGTTTCAGAGGAATCGACACCCGAAGAACTTTCGTTAGCCATCTTCTCCTTGCACTGTTTAAAAAGCAGTTCAAGACTTTCAGACAAGAAGAAGAGATGCCATGGAATCAACCAGCTTCCACTCAAGTGCTCGAGGCAATTGAAAACTCCAAAATAGCGATCGTGGTCATATCGAAGAACTACACTGCTTCAGTCTCGTGCCTCGACGAACTGGCGAAGATAGTCGAGTGTGAGGAGAAACAATCGCTGGTGATGATTCCAGTCCTACACGAGGTGGATCCTTCAGATGTTTTAGAGCAAGCACAGAATCTTGATGGAGATATCAACAACAACTGGGAGACGGTGGAGAGATGGAGAAAGGCACTGGCCAGTATGATTAAGACCTATCAACAACTATACTCTCATTGGGAGGATGGAGACTCAAGTGAGGATGGAGACACAGACGCTTTCATTATTTTTAGAGTTATGCTCCACGTTTCTAAACGTTTGAAACCACCCGAGAAAATGGCACAGACTATGTATTATTGTCACTGGATGATACCTGAAAAAACTGGATTTCTCACCAAGGGGATCATGCTTGTTAGAGATGTTTTCAGGAAGATAGCTGGGAGAATTATGTATGCAGAAAAGCTTATTAGTGTCGTCAACCCTAGTACGCCTGCAAGGAGCCCTGCGTACGTGCAAAAAGACAAGTATGTTACGGGCAACGAGTTGTCTCAATTGGCTCCATCTATTGATTTCGATAGCCTTGTTGGGATGGATCGGCAAATGAAAGCAGTGGACGCACTGCTGCTTAATGTGGATTCCGAAGAAGACGGACTTGGAGAAATGGGCATTTGTGGTGAGGAAAGAGTTGGCAAAACAACACTTGCGAGATGTGTTTACCAAAAGATCTCACCACAGTTTCAAGATCACTACTACTTTGAGTATCAAACCGCACACTCTTTTGGTTCAACCTGTTTGCTAGAGAAAATCGCAAGAGCTGGTCTATCGGCAAAAGTAGCTGTTAGACCGGGTGAAGAGTTAGAGAGATTCGATGAACTTGTGAATGCGAATCTTGGACATCGGAAGGTTTTGCTTATTGTAGATATCCATCTCTATGACACTGGCCAACTCGAAAATATCAGAAACATTGCTCGTCGGTTTGGTCCAGGGAGTAGACTGATATACGTCACCCAGTCCAATCGTGTGCTACTCAAGTGTGGAGTCAAACACCTCTACAAAGTTGAGACTCTAAGATATGATGAAGCTCTTCAGCTCTTTTCACAATTTGCCTTCAAACAGGAACACGTCCCTAGGGAGTACTTCCGGCTCTCCATTCGTGCTGTCCTGATTACAGGTCGTATTCCACTGACCCTAAAAGTATTCGGCTCCTTCCTACGCGGGAAAACCGTCAGTGAATGGGAATCCGAGCTATGTAGACTTGAAGCATCGCAGGATAACTGCGTTGCAAAAATTGTGCATCGTTGTTTTATGGTCACTACTTATGAGTTCTTGAAGCCGCTTTCGTCCCATGACAGGCAGGCCTTACGGAGAATCCGTAAGTATAGCTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MKFDVFLSFRGIDTRRTFVSHLLLALFKKQFKTFRQEEEMPWNQPASTQVLEAIENSKIAIVVISKNYTASVSCLDELAKIVECEEKQSLVMIPVLHEVDPSDVLEQAQNLDGDINNNWETVERWRKALASMIKTYQQLYSHWEDGDSSEDGDTDAFIIFRVMLHVSKRLKPPEKMAQTMYYCHWMIPEKTGFLTKGIMLVRDVFRKIAGRIMYAEKLISVVNPSTPARSPAYVQKDKYVTGNELSQLAPSIDFDSLVGMDRQMKAVDALLLNVDSEEDGLGEMGICGEERVGKTTLARCVYQKISPQFQDHYYFEYQTAHSFGSTCLLEKIARAGLSAKVAVRPGEELERFDELVNANLGHRKVLLIVDIHLYDTGQLENIRNIARRFGPGSRLIYVTQSNRVLLKCGVKHLYKVETLRYDEALQLFSQFAFKQEHVPREYFRLSIRAVLITGRIPLTLKVFGSFLRGKTVSEWESELCRLEASQDNCVAKIVHRCFMVTTYEFLKPLSSHDRQALRRIRKYS |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| ProfileScan: PS50104 IPR000157
|
1-145 | TIR Toll-Interleukin receptor
|
MKFDVFLSFRGIDTRRTFVSHLLLALFKKQFKTFRQEEEMPWNQPASTQVLEAIENSKIAIVVISKNYTASVSCLDELAKIVECEEKQSLVMIPVLHEVDPSDVLEQAQNLDGDINNNWETVERWRKALASMIKTYQQLYSHWED |
| Gene3D: G3DSA:3.40.50.10140 | 2-127 | G3DSA:3.40.50.10140 | KFDVFLSFRGIDTRRTFVSHLLLALFKKQFKTFRQEEEMPWNQPASTQVLEAIENSKIAIVVISKNYTASVSCLDELAKIVECEEKQSLVMIPVLHEVDPSDVLEQAQNLDGDINNNWETVERWRK |
| HMMSmart: SM00255 IPR000157
|
2-135 | TIR Toll-Interleukin receptor
|
KFDVFLSFRGIDTRRTFVSHLLLALFKKQFKTFRQEEEMPWNQPASTQVLEAIENSKIAIVVISKNYTASVSCLDELAKIVECEEKQSLVMIPVLHEVDPSDVLEQAQNLDGDINNNWETVERWRKALASMIKT |
| superfamily: SSF52200 IPR000157
|
3-138 | TIR Toll-Interleukin receptor
|
FDVFLSFRGIDTRRTFVSHLLLALFKKQFKTFRQEEEMPWNQPASTQVLEAIENSKIAIVVISKNYTASVSCLDELAKIVECEEKQSLVMIPVLHEVDPSDVLEQAQNLDGDINNNWETVERWRKALASMIKTYQQ |
| HMMPfam: PF01582 IPR000157
|
5-127 | TIR Toll-Interleukin receptor
|
VFLSFRGIDTRRTFVSHLLLALFKKQFKTFRQEEEMPWNQPASTQVLEAIENSKIAIVVISKNYTASVSCLDELAKIVECEEKQSLVMIPVLHEVDPSDVLEQAQNLDGDINNNWETVERWRK |
| HMMPanther: PTHR11017 | 109-489 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | QNLDGDINNNWETVERWRKALASMIKTYQQLYSHWEDGDSSEDGDTDAFIIFRVMLHVSKRLKPPEKMAQTMYYCHWMIPEKTGFLTKGIMLVRDVFRKIAGRIMYAEKLISVVNPSTPARSPAYVQKDKYVTGNELSQLAPSIDFDSLVGMDRQMKAVDALLLNVDSEEDGLGEMGICGEERVGKTTLARCVYQKISPQFQDHYYFEYQTAHSFGSTCLLEKIARAGLSAKVAVRPGEELERFDELVNANLGHRKVLLIVDIHLYDTGQLENIRNIARRFGPGSRLIYVTQSNRVLLKCGVKHLYKVETLRYDEALQLFSQFAFKQEHVPREYFRLSIRAVLITGRIPLTLKVFGSFLRGKTVSEWESELCRLEASQDNC |
| HMMPanther: PTHR11017:SF20 | 109-489 | PTHR11017:SF20,SUBFAMILY NOT NAMED | QNLDGDINNNWETVERWRKALASMIKTYQQLYSHWEDGDSSEDGDTDAFIIFRVMLHVSKRLKPPEKMAQTMYYCHWMIPEKTGFLTKGIMLVRDVFRKIAGRIMYAEKLISVVNPSTPARSPAYVQKDKYVTGNELSQLAPSIDFDSLVGMDRQMKAVDALLLNVDSEEDGLGEMGICGEERVGKTTLARCVYQKISPQFQDHYYFEYQTAHSFGSTCLLEKIARAGLSAKVAVRPGEELERFDELVNANLGHRKVLLIVDIHLYDTGQLENIRNIARRFGPGSRLIYVTQSNRVLLKCGVKHLYKVETLRYDEALQLFSQFAFKQEHVPREYFRLSIRAVLITGRIPLTLKVFGSFLRGKTVSEWESELCRLEASQDNC |
| superfamily: SSF52540 | 240-482 | SSF52540 | VTGNELSQLAPSIDFDSLVGMDRQMKAVDALLLNVDSEEDGLGEMGICGEERVGKTTLARCVYQKISPQFQDHYYFEYQTAHSFGSTCLLEKIARAGLSAKVAVRPGEELERFDELVNANLGHRKVLLIVDIHLYDTGQLENIRNIARRFGPGSRLIYVTQSNRVLLKCGVKHLYKVETLRYDEALQLFSQFAFKQEHVPREYFRLSIRAVLITGRIPLTLKVFGSFLRGKTVSEWESELCRL |
| Gene3D: G3DSA:3.40.50.300 | 247-382 | G3DSA:3.40.50.300 | QLAPSIDFDSLVGMDRQMKAVDALLLNVDSEEDGLGEMGICGEERVGKTTLARCVYQKISPQFQDHYYFEYQTAHSFGSTCLLEKIARAGLSAKVAVRPGEELERFDELVNANLGHRKVLLIVDIHLYDTGQLENI |
| HMMPfam: PF00931 IPR002182
|
265-489 | NB-ARC,NBS NB-ARC
|
KAVDALLLNVDSEEDGLGEMGICGEERVGKTTLARCVYQKISPQFQDHYYFEYQTAHSFGSTCLLEKIARAGLSAKVAVRPGEELERFDELVNANLGHRKVLLIVDIHLYDTGQLENIRNIARRFGPGSRLIYVTQSNRVLLKCGVKHLYKVETLRYDEALQLFSQFAFKQEHVPREYFRLSIRAVLITGRIPLTLKVFGSFLRGKTVSEWESELCRLEASQDNC |
| FPrintScan: PR00364 IPR000767
|
283-298 | DISEASERSIST Disease resistance protein
|
EMGICGEERVGKTTLA |
| FPrintScan: PR00364 IPR000767
|
359-373 | DISEASERSIST Disease resistance protein
|
NLGHRKVLLIVDIHL |
| FPrintScan: PR00364 IPR000767
|
453-467 | DISEASERSIST Disease resistance protein
|
TGRIPLTLKVFGSFL |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
