PRGDB00061534 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438192 (FJ842805) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGATTATTGTAATTGGCTATACGATGTTTTCCCGAGCTTTAGTGGGGAAGATGTGCGCAAAAATTTCCTTAGCCATTTTCTCAAGGAGCTAGATCGAAAACTGATCAAGGCTTTCAAAGACAATGAGATCGAGAGAAGCCACTCGATTGCCCCTGCGCTTGTAACCGCGATTAGGACGTCCAGGATCGCGGTCGTTGTGTTCTCGCCAAAGTATGCCTCTTCGAGTTGGTGTCTGGACGAGTTGGTTGAGATCGTGAGATGTATGGAAGAGTTGGGTCAACTAGTTCTGCCCATTTTCTATGGTTTAGATCCATCTCATGTCAGGAAACAAACGGGCAAGTTTGGAGAGGGTTTTGCCAAGACTTGTAAGATGAAAACAAAAGCAGTGAAAATCAGATGGCAGCAGGCGTTGACCGTTGTCGCGAATCTACTCGGATATCATTCCCAAAATTTCAATAACGAAGCAAAAATGATTGAAGTAATCGTGAATGACCTTTTGGGCAAACTGAATTTTACTCCATCAAAAGATTTTGAGGAATGTGTTGGCATTGAAGATCATATTGCTGAGATGAGCTTGCTGTTGGATATGGAATCTGAGGAAGTAAGGATGATTGGGATATGGGGCCCATCGGGAATTGGCAAGACTACCATTGCAAGAGCTCTATTTGGTAGACTCTCTCGTCGGTTCCAGTGCAGTGTTTTCATTGACAGGAAATTCATATCTAAGATTATGGAAGGTTATAGGGGAGCCAACCCTGATGACTATAACATGAAGCTGAGTTTGCAAAGACATTTTCTGTCTGAAATTTTAGGCACAAGGCACATACAGATAGATCACTTAGGTGCGGTGGAAAATAGGCTAAAAAACCAGAAAGTCCTTATCTCTATCGATGATTTGGATGATCAAGTGGTGCTAGATGTATTGGCAGGTCAAGCTCATTGGTTCGGAAGTGGAAGCAGAATAATCGTGGTTACAAAAGATAGGCATTTTTTAAGGGCTCATGAGATTGATCATATTTACGAGGTCTGTCTCCCATCTGAAGAGCGTGCTCTTGAGATACTTTGTCGATCTGATTTCAAGCAAAACTCTCCACGTGAAGGCTTTGAGAAGCTTGCAGTTGAAGTTACTAGACATGCCGGTAGTCTTCCTTTGGGTCTTACTGTTTTAGGTTCCACTTTGCGGGGGAGGGACAATGCGTATTGGATGGATATTCTGCCAACGCTTCAAAATGGTGTTGGTGAGAAAATAGAGAAAATCCTAAGAATTAGCTATGATGGGTTGGATAGAGAAGAAGATAAAGTGATATATCGTCACATTGCATGTCTTTTCAATGGTGAGAAAGTCCCTTACATTAAGTTGTTGCTGGAAGATAGGAACCTGGGTGTAAATGTTGGGATCGAAAACCTAGTTGATAAGTCTCTCATACACGTAAGAAGCGATACCGTGGAGATGCACAGTTTGTTACAAGAAATAGGTAGAAAAATTGTTCGTGCACAGTCCATTGACGAGCCTGGAAACCGCGAATTTCTGGTGGATTTGGATGATATATGCGACGTACTTAGTGAAAACAGTGGTACTAAGAAAGTTTTAGGTGTAGCACTGGATATGGACAAGATTCATGATGAGTTACATGTCCATGAAAATGCCTTCAAAGGGATGAGTAATCTCCGTTTCCTTAAATTTTACACGTTTGGAAAAGAAGCCAGATTGCGGTTAAACGAAAGCTTTGACTATTTGCCCTCAAAACTCAGATTATTGTGTTGGGACAAATATCCAATGAGATGTTTGCCTTCCAAGTTTTGTCCTCAAAACCTCGTCATTCTTGAAATGAAGAATAGCAATCTTGAAAACTTGTGGGAAGGCGTCTCGCCGCTTGGACATCTTAAGAAAATGGATTTGTGGGGATCTAAGAACTTGAAAGAGATTCCCGATCTTTCGAAAGCCACCAGTCTAGAGAAATTAGATCTCAAGGGCTGTTCTAGTTTGGTGGAGCTCCCTTCATCTATTAGCAAACTCAATAAACTGACTGAATTGAACATGCCAGCATGTACAAACCTAGAGACTCTTCCGACTGGAATGAACCTTGAATCCCTCAACCGCCTCAATCTCAAAGGATGCACACGCTTGAGAATTTTTCCAAATATCTCAAGAAACATCTCAGAGCTTATTTTAGACGAAACATCCATTACCGAATTCCCTTCAAATTTGTATCTCGAGAATCTTAATTTGTTTTCCATGGAAGGTATAAAGAGTGAGAAGCTATGGGAAAGAGCACAGCCGCTTACACCTCTCATGACCATGTTATCTCCTTCTTTGAGGATCTTGTCTCTCTCGGATATCCCTAGTTTAGTGGAGCTTCCTTCTTCATTTCATAATCTCCATAACCTTACAAATTTGAGCATTACAAGATGCAAGAACCTAGAGATTCTTCCCACGAGAATCAACCTTCCATCGCTCATTCGCCTTATTCTTAGTGGGTGCTCGCGGTTGAGGAGTTTTCCTGATATCTCAAGAAATGTCTTAGACCTCAATCTAATCCAAACAGGAATAGAAGAGATTCCTTTGTGGGTTGAGGACTTCTCTAGGCTCAAATACCTATTTATGGAAAGTTGCCCTAAGTTAAAATATGTATCCATTTCTACACTGAGACATCTTGAGATGGTTGACTTTTCAAACTGTGGGGCATTGACTGGAGCTGGTATAATTGGTTATCAAAGTGGAGAGGCAATGAGACCAGATGATATTGAAACAGAGGTACTAGTCCCCGAGGAGGCCTCTTCTTCTCTTCAAGATAATTTTGTCCCAAGAGTCAAATTCAGACTCATCAACTGCTTTGACTTGAATCTTGAAGCTCTTCTTCAGCAACAATCAGTTTTTGAGCAACTCATCTTGTCTTGTGAAGAAGTGCCTTCATATTTCACTCATAAAGCTACAGGAGCATCCACATCTCTGACCGTCCCTCTGCTTCAAACCTCTCTCTCTCGACAAATCTTCAGACTTTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MDYCNWLYDVFPSFSGEDVRKNFLSHFLKELDRKLIKAFKDNEIERSHSIAPALVTAIRTSRIAVVVFSPKYASSSWCLDELVEIVRCMEELGQLVLPIFYGLDPSHVRKQTGKFGEGFAKTCKMKTKAVKIRWQQALTVVANLLGYHSQNFNNEAKMIEVIVNDLLGKLNFTPSKDFEECVGIEDHIAEMSLLLDMESEEVRMIGIWGPSGIGKTTIARALFGRLSRRFQCSVFIDRKFISKIMEGYRGANPDDYNMKLSLQRHFLSEILGTRHIQIDHLGAVENRLKNQKVLISIDDLDDQVVLDVLAGQAHWFGSGSRIIVVTKDRHFLRAHEIDHIYEVCLPSEERALEILCRSDFKQNSPREGFEKLAVEVTRHAGSLPLGLTVLGSTLRGRDNAYWMDILPTLQNGVGEKIEKILRISYDGLDREEDKVIYRHIACLFNGEKVPYIKLLLEDRNLGVNVGIENLVDKSLIHVRSDTVEMHSLLQEIGRKIVRAQSIDEPGNREFLVDLDDICDVLSENSGTKKVLGVALDMDKIHDELHVHENAFKGMSNLRFLKFYTFGKEARLRLNESFDYLPSKLRLLCWDKYPMRCLPSKFCPQNLVILEMKNSNLENLWEGVSPLGHLKKMDLWGSKNLKEIPDLSKATSLEKLDLKGCSSLVELPSSISKLNKLTELNMPACTNLETLPTGMNLESLNRLNLKGCTRLRIFPNISRNISELILDETSITEFPSNLYLENLNLFSMEGIKSEKLWERAQPLTPLMTMLSPSLRILSLSDIPSLVELPSSFHNLHNLTNLSITRCKNLEILPTRINLPSLIRLILSGCSRLRSFPDISRNVLDLNLIQTGIEEIPLWVEDFSRLKYLFMESCPKLKYVSISTLRHLEMVDFSNCGALTGAGIIGYQSGEAMRPDDIETEVLVPEEASSSLQDNFVPRVKFRLINCFDLNLEALLQQQSVFEQLILSCEEVPSYFTHKATGASTSLTVPLLQTSLSRQIFRL |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
1-147 | TIR Toll-Interleukin receptor
|
MDYCNWLYDVFPSFSGEDVRKNFLSHFLKELDRKLIKAFKDNEIERSHSIAPALVTAIRTSRIAVVVFSPKYASSSWCLDELVEIVRCMEELGQLVLPIFYGLDPSHVRKQTGKFGEGFAKTCKMKTKAVKIRWQQALTVVANLLGY |
| Gene3D: G3DSA:3.40.50.10140 | 5-143 | G3DSA:3.40.50.10140 | NWLYDVFPSFSGEDVRKNFLSHFLKELDRKLIKAFKDNEIERSHSIAPALVTAIRTSRIAVVVFSPKYASSSWCLDELVEIVRCMEELGQLVLPIFYGLDPSHVRKQTGKFGEGFAKTCKMKTKAVKIRWQQALTVVAN |
| ProfileScan: PS50104 IPR000157
|
6-144 | TIR Toll-Interleukin receptor
|
WLYDVFPSFSGEDVRKNFLSHFLKELDRKLIKAFKDNEIERSHSIAPALVTAIRTSRIAVVVFSPKYASSSWCLDELVEIVRCMEELGQLVLPIFYGLDPSHVRKQTGKFGEGFAKTCKMKTKAVKIRWQQALTVVANL |
| HMMSmart: SM00255 IPR000157
|
7-144 | TIR Toll-Interleukin receptor
|
LYDVFPSFSGEDVRKNFLSHFLKELDRKLIKAFKDNEIERSHSIAPALVTAIRTSRIAVVVFSPKYASSSWCLDELVEIVRCMEELGQLVLPIFYGLDPSHVRKQTGKFGEGFAKTCKMKTKAVKIRWQQALTVVANL |
| HMMPfam: PF01582 IPR000157
|
10-138 | TIR Toll-Interleukin receptor
|
VFPSFSGEDVRKNFLSHFLKELDRKLIKAFKDNEIERSHSIAPALVTAIRTSRIAVVVFSPKYASSSWCLDELVEIVRCMEELGQLVLPIFYGLDPSHVRKQTGKFGEGFAKTCKMKTKAVKIRWQQAL |
| HMMPanther: PTHR11017 | 30-982 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | ELDRKLIKAFKDNEIERSHSIAPALVTAIRTSRIAVVVFSPKYASSSWCLDELVEIVRCMEELGQLVLPIFYGLDPSHVRKQTGKFGEGFAKTCKMKTKAVKIRWQQALTVVANLLGYHSQNFNNEAKMIEVIVNDLLGKLNFTPSKDFEECVGIEDHIAEMSLLLDMESEEVRMIGIWGPSGIGKTTIARALFGRLSRRFQCSVFIDRKFISKIMEGYRGANPDDYNMKLSLQRHFLSEILGTRHIQIDHLGAVENRLKNQKVLISIDDLDDQVVLDVLAGQAHWFGSGSRIIVVTKDRHFLRAHEIDHIYEVCLPSEERALEILCRSDFKQNSPREGFEKLAVEVTRHAGSLPLGLTVLGSTLRGRDNAYWMDILPTLQNGVGEKIEKILRISYDGLDREEDKVIYRHIACLFNGEKVPYIKLLLEDRNLGVNVGIENLVDKSLIHVRSDTVEMHSLLQEIGRKIVRAQSIDEPGNREFLVDLDDICDVLSENSGTKKVLGVALDMDKIHDELHVHENAFKGMSNLRFLKFYTFGKEARLRLNESFDYLPSKLRLLCWDKYPMRCLPSKFCPQNLVILEMKNSNLENLWEGVSPLGHLKKMDLWGSKNLKEIPDLSKATSLEKLDLKGCSSLVELPSSISKLNKLTELNMPACTNLETLPTGMNLESLNRLNLKGCTRLRIFPNISRNISELILDETSITEFPSNLYLENLNLFSMEGIKSEKLWERAQPLTPLMTMLSPSLRILSLSDIPSLVELPSSFHNLHNLTNLSITRCKNLEILPTRINLPSLIRLILSGCSRLRSFPDISRNVLDLNLIQTGIEEIPLWVEDFSRLKYLFMESCPKLKYVSISTLRHLEMVDFSNCGALTGAGIIGYQSGEAMRPDDIETEVLVPEEASSSLQDNFVPRVKFRLINCFDLNLEALLQQQSVFEQLILSCEEVPSYFTHKATGAS |
| HMMPanther: PTHR11017:SF20 | 30-982 | PTHR11017:SF20,SUBFAMILY NOT NAMED | ELDRKLIKAFKDNEIERSHSIAPALVTAIRTSRIAVVVFSPKYASSSWCLDELVEIVRCMEELGQLVLPIFYGLDPSHVRKQTGKFGEGFAKTCKMKTKAVKIRWQQALTVVANLLGYHSQNFNNEAKMIEVIVNDLLGKLNFTPSKDFEECVGIEDHIAEMSLLLDMESEEVRMIGIWGPSGIGKTTIARALFGRLSRRFQCSVFIDRKFISKIMEGYRGANPDDYNMKLSLQRHFLSEILGTRHIQIDHLGAVENRLKNQKVLISIDDLDDQVVLDVLAGQAHWFGSGSRIIVVTKDRHFLRAHEIDHIYEVCLPSEERALEILCRSDFKQNSPREGFEKLAVEVTRHAGSLPLGLTVLGSTLRGRDNAYWMDILPTLQNGVGEKIEKILRISYDGLDREEDKVIYRHIACLFNGEKVPYIKLLLEDRNLGVNVGIENLVDKSLIHVRSDTVEMHSLLQEIGRKIVRAQSIDEPGNREFLVDLDDICDVLSENSGTKKVLGVALDMDKIHDELHVHENAFKGMSNLRFLKFYTFGKEARLRLNESFDYLPSKLRLLCWDKYPMRCLPSKFCPQNLVILEMKNSNLENLWEGVSPLGHLKKMDLWGSKNLKEIPDLSKATSLEKLDLKGCSSLVELPSSISKLNKLTELNMPACTNLETLPTGMNLESLNRLNLKGCTRLRIFPNISRNISELILDETSITEFPSNLYLENLNLFSMEGIKSEKLWERAQPLTPLMTMLSPSLRILSLSDIPSLVELPSSFHNLHNLTNLSITRCKNLEILPTRINLPSLIRLILSGCSRLRSFPDISRNVLDLNLIQTGIEEIPLWVEDFSRLKYLFMESCPKLKYVSISTLRHLEMVDFSNCGALTGAGIIGYQSGEAMRPDDIETEVLVPEEASSSLQDNFVPRVKFRLINCFDLNLEALLQQQSVFEQLILSCEEVPSYFTHKATGAS |
| superfamily: SSF52540 | 61-437 | SSF52540 | SRIAVVVFSPKYASSSWCLDELVEIVRCMEELGQLVLPIFYGLDPSHVRKQTGKFGEGFAKTCKMKTKAVKIRWQQALTVVANLLGYHSQNFNNEAKMIEVIVNDLLGKLNFTPSKDFEECVGIEDHIAEMSLLLDMESEEVRMIGIWGPSGIGKTTIARALFGRLSRRFQCSVFIDRKFISKIMEGYRGANPDDYNMKLSLQRHFLSEILGTRHIQIDHLGAVENRLKNQKVLISIDDLDDQVVLDVLAGQAHWFGSGSRIIVVTKDRHFLRAHEIDHIYEVCLPSEERALEILCRSDFKQNSPREGFEKLAVEVTRHAGSLPLGLTVLGSTLRGRDNAYWMDILPTLQNGVGEKIEKILRISYDGLDREEDKVIY |
| HMMPfam: PF00931 IPR002182
|
185-450 | NB-ARC,NBS NB-ARC
|
EDHIAEMSLLLDMESEEVRMIGIWGPSGIGKTTIARALFGRLSRRFQCSVFIDRKFISKIMEGYRGANPDDYNMKLSLQRHFLSEILGTRHIQIDHLGAVENRLKNQKVLISIDDLDDQVVLDVLAGQAHWFGSGSRIIVVTKDRHFLRAHEIDHIYEVCLPSEERALEILCRSDFKQNSPREGFEKLAVEVTRHAGSLPLGLTVLGSTLRGRDNAYWMDILPTLQNGVGEKIEKILRISYDGLDREEDKVIYRHIACLFNGEKVP |
| Gene3D: G3DSA:3.40.50.300 | 201-258 | G3DSA:3.40.50.300 | EVRMIGIWGPSGIGKTTIARALFGRLSRRFQCSVFIDRKFISKIMEGYRGANPDDYNM |
| HMMSmart: SM00382 IPR003593
|
201-347 | AAA,NBS ATPase, AAA+ type, core
|
EVRMIGIWGPSGIGKTTIARALFGRLSRRFQCSVFIDRKFISKIMEGYRGANPDDYNMKLSLQRHFLSEILGTRHIQIDHLGAVENRLKNQKVLISIDDLDDQVVLDVLAGQAHWFGSGSRIIVVTKDRHFLRAHEIDHIYEVCLPS |
| FPrintScan: PR00364 IPR000767
|
204-219 | DISEASERSIST Disease resistance protein
|
MIGIWGPSGIGKTTIA |
| FPrintScan: PR00364 IPR000767
|
287-301 | DISEASERSIST Disease resistance protein
|
RLKNQKVLISIDDLD |
| Gene3D: G3DSA:3.40.50.300 | 292-357 | G3DSA:3.40.50.300 | KVLISIDDLDDQVVLDVLAGQAHWFGSGSRIIVVTKDRHFLRAHEIDHIYEVCLPSEERALEILCR |
| FPrintScan: PR00364 IPR000767
|
380-394 | DISEASERSIST Disease resistance protein
|
AGSLPLGLTVLGSTL |
| superfamily: SSF52058 | 496-894 | SSF52058,LRR | IVRAQSIDEPGNREFLVDLDDICDVLSENSGTKKVLGVALDMDKIHDELHVHENAFKGMSNLRFLKFYTFGKEARLRLNESFDYLPSKLRLLCWDKYPMRCLPSKFCPQNLVILEMKNSNLENLWEGVSPLGHLKKMDLWGSKNLKEIPDLSKATSLEKLDLKGCSSLVELPSSISKLNKLTELNMPACTNLETLPTGMNLESLNRLNLKGCTRLRIFPNISRNISELILDETSITEFPSNLYLENLNLFSMEGIKSEKLWERAQPLTPLMTMLSPSLRILSLSDIPSLVELPSSFHNLHNLTNLSITRCKNLEILPTRINLPSLIRLILSGCSRLRSFPDISRNVLDLNLIQTGIEEIPLWVEDFSRLKYLFMESCPKLKYVSISTLRHLEMVDFSNC |
| Gene3D: G3DSA:3.80.10.10 | 586-751 | G3DSA:3.80.10.10 | LLCWDKYPMRCLPSKFCPQNLVILEMKNSNLENLWEGVSPLGHLKKMDLWGSKNLKEIPDLSKATSLEKLDLKGCSSLVELPSSISKLNKLTELNMPACTNLETLPTGMNLESLNRLNLKGCTRLRIFPNISRNISELILDETSITEFPSNLYLENLNLFSMEGIK |
| HMMPfam: PF07725 IPR011713
|
605-623 | LRR_3 Leucine-rich repeat 3
|
NLVILEMKNSNLENLWEGV |
| FPrintScan: PR00364 IPR000767
|
647-663 | DISEASERSIST Disease resistance protein
|
SKATSLEKLDLKGCSSL |
| HMMPfam: PF00560 IPR001611
|
651-673 | LRR_1 Leucine-rich repeat
|
SLEKLDLKGCSSLVELPSSISKL |
| Gene3D: G3DSA:3.80.10.10 | 770-902 | G3DSA:3.80.10.10 | SPSLRILSLSDIPSLVELPSSFHNLHNLTNLSITRCKNLEILPTRINLPSLIRLILSGCSRLRSFPDISRNVLDLNLIQTGIEEIPLWVEDFSRLKYLFMESCPKLKYVSISTLRHLEMVDFSNCGALTGAGI |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
