PRGDB00061538 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438184 (FJ842801) |
| Gene Class | CN |
| Domain Type | NBS, Ser-Thr Kinase, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGTTGATGCGATCACGGGGTACGTTGTCGGAAAGATGGGTGACTATCTCATCAAACAAGCGTCGATGCTGATGACAGTCAGGGATGATCTTGAAGAGCTGAAGACGGAGTTGACTTGCATCCACTGTTATCTCAGGGATGTTGAAGCACGAGAAAGAGAAGATGAGGTCTCAAAAGAGTGGACTAAAATGGTTTTAGATATAGCTTATGATGTAGAAGATGTTTTGGACACTTATTTTCTAAAGTTCAAAGAACGATCACAGAGGAAAGGTTTGATGAGACTGGCCAACAAAATAGGCGAGAAAAAGGATGCGTACAATATAGGTGACGATATCAGATCCCTCAAGAGAAAACTTCTTGATATCACTCGCAAGCGTCAGGCTTACGGCATAGGAAGAAGATTCAAAGAGGTAACAAGTTGGAGGGTGAGGCAGCTTCGACGTGCTCGACCTGTTGATCATGAAGAGCTAGTAGTTGGTTTTGAAGATGATGTTAAGCTTCTTTTGGCAAAGCTGCTTGATGATGAGGGTGAGCGATATATCATCTCGATATTTGGCATGGGAGGTCTCGGGAAGACTGCTCTTGCTAGGAAGCTCTACAACTTGGGGGATGTAAAGAGAAGATTTGAGTATCGCGCCTGGACCTATGTTTCTCAAGATTATAATACACGAGATATGCTTTTAAGAATCATAAGATCTCTAGGAGTTGCTTCTGGTGAAGAGCTTGAAAGGATCAAGATGTTTACAGAGGAGGAGCTAGAAGCTTACCTTCATGATCTTCTAGACGGAAGAAGGTACTTGGTGGTGGTAGATGATATATGGAAGCAGGACGCGTGGGAGAGCCTCAAGAGAGCCTTACCGTGCAATCATGGAGGAAGTAGAGTCATCATCACTACACGCATCAAAGCTGTCGCTGAAGGCGTGGATGGGAGAGTCTATGTTCATAAGTTAAGGTTTTTGACGTTTGAAGAAAGCTGGAAACTGTTTGAGCAGAAAGCATTCATGAATTTTCAATGGGTTGTCGATGAGGATCTGCATAGAATTGGCAAAGTAATGGTTCAAAAATGCGATGGGTTACCTCTTGCTATAGTCCTTCTTGCTGGGCTATTGTCTAAGAAGAGGCCAAATGAGTGGCATGAGGTCAGAAGGGTTTATACAAGAGGATGGAGAATGATGATGGAAGATGTGGCTCGGCATTACATAGAAGAGCTGATAGACATAAGCTTAGTGGAAGCAGTGAGGAGAGAAAGAGGAAAAGTGGTGTTTTGTAGAATCCATGATCTTCTTAGAGACGTGGCTATCAAGAAAGCAAAGGAGATCAACTTTGTAAGTCTTGTTTATAACGACCATCATTCTTCTTCAACTACTTGCAGAAGAGAAGTGGTACACCATCTTATGGACAACAACTACTTGTGTGACAGACGTGTGAACAAACGGATGCGGTCCTTCTTGTTCTTCGGAGAGCACAAGGTAATGCTGGGAAGTTATGTTAAGACCACAAACTTGAAACTGAAGCTACTTAGAGTGCTTAATCTCAGAGGGCTTCTGTTTGACTGTGAAGGATACATCCCCTTTATGAGTTTACCAGATGTGATATGCGAGTTAATACACTTGAGGTATCTTGGTGTAGCTGATACTGGTCTTAGACATTTACCATCTCTGATCTCCAACTTACAGTTTCTACAGACACTAGATGCATCAGGCAACCGGTTTGAGGGAATGACTGATCTACGTAAGCTCACATCACTAAGGCACCTCATGGGAAGATTCATTGGAGAATTACTAATAGGAGATGCGGTTAACCTCCAGACTTTAAGGTCTATCTCCTCCTACAGCTGGAGTAAGCTACAATGTAAGTCACTCAAAAACCTTCAAGACTTGGAGATATATGATTCCGGATATGTAGCGCTGACAAGAGTTCGTTTAAACTTGAGTTCCTTCTCTAAACTAACAAATCTTCGTGCCTTAACTCTGAGAGTACCGACCTTCAGAATATCATCAGAGGCAGTTGTGTTCCTTCCCAGCCTTGAGTCTTTGACATTTTTCGGAACAAATCTCGAGGAAGACCCAATGCCTGCTTTGCGGAAACTGCCCAGACTGGAAGATCTAGTCTTGGAAGAATGTGATTGCTCTGAAGTAAAGATGAGCATCAGTGCACAAGGTTTTGCTCGGCTGAGGAAGCTTGTATTGTTCAGGGTAAGATTAGATGCATTGTGGATAGAAGAAGAAGCCATGCCTAGTTTGATGCATCTGAATCTGCTCAACAGATTAGGACCAAGAACGAAGATGATGATTCCAGATCGATTTTTGGCACTTGTTAGAGGTTCAAGATCCTCAAGAGCAAAGCCTTTACATTGGACATCATGTTTGAAGATTGCAGAAGATGTAGCTCAAGGCTTGTACTACATTCACCAAACATCATCAGCATTAGTCCATGGAAACCTTAAATCAACGAACATCCTCCTCGGACATGACTTCGAAGCTTGTTTAACAGGTTACTGCCTCAGCGTCCTGATAGACTCTTCTTCTTCTTCAGTTTCACCTGATGATGCTGACACTTCCTCTTACAAAGCCCCTGAGATCAGAAAATCATCTCGTAGACCCACTTCCAAATGCGATGTCTACTCCTTTGGTGTTCTTGATCTTTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MVDAITGYVVGKMGDYLIKQASMLMTVRDDLEELKTELTCIHCYLRDVEAREREDEVSKEWTKMVLDIAYDVEDVLDTYFLKFKERSQRKGLMRLANKIGEKKDAYNIGDDIRSLKRKLLDITRKRQAYGIGRRFKEVTSWRVRQLRRARPVDHEELVVGFEDDVKLLLAKLLDDEGERYIISIFGMGGLGKTALARKLYNLGDVKRRFEYRAWTYVSQDYNTRDMLLRIIRSLGVASGEELERIKMFTEEELEAYLHDLLDGRRYLVVVDDIWKQDAWESLKRALPCNHGGSRVIITTRIKAVAEGVDGRVYVHKLRFLTFEESWKLFEQKAFMNFQWVVDEDLHRIGKVMVQKCDGLPLAIVLLAGLLSKKRPNEWHEVRRVYTRGWRMMMEDVARHYIEELIDISLVEAVRRERGKVVFCRIHDLLRDVAIKKAKEINFVSLVYNDHHSSSTTCRREVVHHLMDNNYLCDRRVNKRMRSFLFFGEHKVMLGSYVKTTNLKLKLLRVLNLRGLLFDCEGYIPFMSLPDVICELIHLRYLGVADTGLRHLPSLISNLQFLQTLDASGNRFEGMTDLRKLTSLRHLMGRFIGELLIGDAVNLQTLRSISSYSWSKLQCKSLKNLQDLEIYDSGYVALTRVRLNLSSFSKLTNLRALTLRVPTFRISSEAVVFLPSLESLTFFGTNLEEDPMPALRKLPRLEDLVLEECDCSEVKMSISAQGFARLRKLVLFRVRLDALWIEEEAMPSLMHLNLLNRLGPRTKMMIPDRFLALVRGSRSSRAKPLHWTSCLKIAEDVAQGLYYIHQTSSALVHGNLKSTNILLGHDFEACLTGYCLSVLIDSSSSSVSPDDADTSSYKAPEIRKSSRRPTSKCDVYSFGVLDL |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155:SF243 | 1-757 | PTHR23155:SF243,DISEASE RESISTANCE PROTEIN (CC-NBS CLASS) | MVDAITGYVVGKMGDYLIKQASMLMTVRDDLEELKTELTCIHCYLRDVEAREREDEVSKEWTKMVLDIAYDVEDVLDTYFLKFKERSQRKGLMRLANKIGEKKDAYNIGDDIRSLKRKLLDITRKRQAYGIGRRFKEVTSWRVRQLRRARPVDHEELVVGFEDDVKLLLAKLLDDEGERYIISIFGMGGLGKTALARKLYNLGDVKRRFEYRAWTYVSQDYNTRDMLLRIIRSLGVASGEELERIKMFTEEELEAYLHDLLDGRRYLVVVDDIWKQDAWESLKRALPCNHGGSRVIITTRIKAVAEGVDGRVYVHKLRFLTFEESWKLFEQKAFMNFQWVVDEDLHRIGKVMVQKCDGLPLAIVLLAGLLSKKRPNEWHEVRRVYTRGWRMMMEDVARHYIEELIDISLVEAVRRERGKVVFCRIHDLLRDVAIKKAKEINFVSLVYNDHHSSSTTCRREVVHHLMDNNYLCDRRVNKRMRSFLFFGEHKVMLGSYVKTTNLKLKLLRVLNLRGLLFDCEGYIPFMSLPDVICELIHLRYLGVADTGLRHLPSLISNLQFLQTLDASGNRFEGMTDLRKLTSLRHLMGRFIGELLIGDAVNLQTLRSISSYSWSKLQCKSLKNLQDLEIYDSGYVALTRVRLNLSSFSKLTNLRALTLRVPTFRISSEAVVFLPSLESLTFFGTNLEEDPMPALRKLPRLEDLVLEECDCSEVKMSISAQGFARLRKLVLFRVRLDALWIEEEAMPSLMHLNLLNRL |
| HMMPanther: PTHR23155 | 1-757 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | MVDAITGYVVGKMGDYLIKQASMLMTVRDDLEELKTELTCIHCYLRDVEAREREDEVSKEWTKMVLDIAYDVEDVLDTYFLKFKERSQRKGLMRLANKIGEKKDAYNIGDDIRSLKRKLLDITRKRQAYGIGRRFKEVTSWRVRQLRRARPVDHEELVVGFEDDVKLLLAKLLDDEGERYIISIFGMGGLGKTALARKLYNLGDVKRRFEYRAWTYVSQDYNTRDMLLRIIRSLGVASGEELERIKMFTEEELEAYLHDLLDGRRYLVVVDDIWKQDAWESLKRALPCNHGGSRVIITTRIKAVAEGVDGRVYVHKLRFLTFEESWKLFEQKAFMNFQWVVDEDLHRIGKVMVQKCDGLPLAIVLLAGLLSKKRPNEWHEVRRVYTRGWRMMMEDVARHYIEELIDISLVEAVRRERGKVVFCRIHDLLRDVAIKKAKEINFVSLVYNDHHSSSTTCRREVVHHLMDNNYLCDRRVNKRMRSFLFFGEHKVMLGSYVKTTNLKLKLLRVLNLRGLLFDCEGYIPFMSLPDVICELIHLRYLGVADTGLRHLPSLISNLQFLQTLDASGNRFEGMTDLRKLTSLRHLMGRFIGELLIGDAVNLQTLRSISSYSWSKLQCKSLKNLQDLEIYDSGYVALTRVRLNLSSFSKLTNLRALTLRVPTFRISSEAVVFLPSLESLTFFGTNLEEDPMPALRKLPRLEDLVLEECDCSEVKMSISAQGFARLRKLVLFRVRLDALWIEEEAMPSLMHLNLLNRL |
| superfamily: SSF52540 | 141-404 | SSF52540 | WRVRQLRRARPVDHEELVVGFEDDVKLLLAKLLDDEGERYIISIFGMGGLGKTALARKLYNLGDVKRRFEYRAWTYVSQDYNTRDMLLRIIRSLGVASGEELERIKMFTEEELEAYLHDLLDGRRYLVVVDDIWKQDAWESLKRALPCNHGGSRVIITTRIKAVAEGVDGRVYVHKLRFLTFEESWKLFEQKAFMNFQWVVDEDLHRIGKVMVQKCDGLPLAIVLLAGLLSKKRPNEWHEVRRVYTRGWRMMMEDVARHYIEEL |
| HMMPfam: PF00931 IPR002182
|
162-409 | NB-ARC,NBS NB-ARC
|
EDDVKLLLAKLLDDEGERYIISIFGMGGLGKTALARKLYNLGDVKRRFEYRAWTYVSQDYNTRDMLLRIIRSLGVASGEELERIKMFTEEELEAYLHDLLDGRRYLVVVDDIWKQDAWESLKRALPCNHGGSRVIITTRIKAVAEGVDGRVYVHKLRFLTFEESWKLFEQKAFMNFQWVVDEDLHRIGKVMVQKCDGLPLAIVLLAGLLSKKRPNEWHEVRRVYTRGWRMMMEDVARHYIEELIDISL |
| Gene3D: G3DSA:3.40.50.300 | 177-312 | G3DSA:3.40.50.300 | GERYIISIFGMGGLGKTALARKLYNLGDVKRRFEYRAWTYVSQDYNTRDMLLRIIRSLGVASGEELERIKMFTEEELEAYLHDLLDGRRYLVVVDDIWKQDAWESLKRALPCNHGGSRVIITTRIKAVAEGVDGRV |
| FPrintScan: PR00364 IPR000767
|
181-196 | DISEASERSIST Disease resistance protein
|
IISIFGMGGLGKTALA |
| FPrintScan: PR00364 IPR000767
|
260-274 | DISEASERSIST Disease resistance protein
|
LLDGRRYLVVVDDIW |
| FPrintScan: PR00364 IPR000767
|
356-370 | DISEASERSIST Disease resistance protein
|
CDGLPLAIVLLAGLL |
| superfamily: SSF52058 | 424-755 | SSF52058,LRR | RIHDLLRDVAIKKAKEINFVSLVYNDHHSSSTTCRREVVHHLMDNNYLCDRRVNKRMRSFLFFGEHKVMLGSYVKTTNLKLKLLRVLNLRGLLFDCEGYIPFMSLPDVICELIHLRYLGVADTGLRHLPSLISNLQFLQTLDASGNRFEGMTDLRKLTSLRHLMGRFIGELLIGDAVNLQTLRSISSYSWSKLQCKSLKNLQDLEIYDSGYVALTRVRLNLSSFSKLTNLRALTLRVPTFRISSEAVVFLPSLESLTFFGTNLEEDPMPALRKLPRLEDLVLEECDCSEVKMSISAQGFARLRKLVLFRVRLDALWIEEEAMPSLMHLNLLN |
| Gene3D: G3DSA:3.80.10.10 | 504-619 | G3DSA:3.80.10.10 | LKLLRVLNLRGLLFDCEGYIPFMSLPDVICELIHLRYLGVADTGLRHLPSLISNLQFLQTLDASGNRFEGMTDLRKLTSLRHLMGRFIGELLIGDAVNLQTLRSISSYSWSKLQCK |
| FPrintScan: PR00364 IPR000767
|
556-572 | DISEASERSIST Disease resistance protein
|
SNLQFLQTLDASGNRFE |
| ProfileScan: PS50011 IPR000719
|
585-882 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
HLMGRFIGELLIGDAVNLQTLRSISSYSWSKLQCKSLKNLQDLEIYDSGYVALTRVRLNLSSFSKLTNLRALTLRVPTFRISSEAVVFLPSLESLTFFGTNLEEDPMPALRKLPRLEDLVLEECDCSEVKMSISAQGFARLRKLVLFRVRLDALWIEEEAMPSLMHLNLLNRLGPRTKMMIPDRFLALVRGSRSSRAKPLHWTSCLKIAEDVAQGLYYIHQTSSALVHGNLKSTNILLGHDFEACLTGYCLSVLIDSSSSSVSPDDADTSSYKAPEIRKSSRRPTSKCDVYSFGVLDL |
| Gene3D: G3DSA:3.80.10.10 | 620-753 | G3DSA:3.80.10.10 | SLKNLQDLEIYDSGYVALTRVRLNLSSFSKLTNLRALTLRVPTFRISSEAVVFLPSLESLTFFGTNLEEDPMPALRKLPRLEDLVLEECDCSEVKMSISAQGFARLRKLVLFRVRLDALWIEEEAMPSLMHLNL |
| Gene3D: G3DSA:1.10.510.10 | 771-880 | G3DSA:1.10.510.10 | ALVRGSRSSRAKPLHWTSCLKIAEDVAQGLYYIHQTSSALVHGNLKSTNILLGHDFEACLTGYCLSVLIDSSSSSVSPDDADTSSYKAPEIRKSSRRPTSKCDVYSFGVL |
| HMMPfam: PF00069 IPR017442
|
780-880 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
RAKPLHWTSCLKIAEDVAQGLYYIHQTSSALVHGNLKSTNILLGHDFEACLTGYCLSVLIDSSSSSVSPDDADTSSYKAPEIRKSSRRPTSKCDVYSFGVL |
| superfamily: SSF56112 IPR011009
|
783-880 | Kinase_like Protein kinase-like domain
|
PLHWTSCLKIAEDVAQGLYYIHQTSSALVHGNLKSTNILLGHDFEACLTGYCLSVLIDSSSSSVSPDDADTSSYKAPEIRKSSRRPTSKCDVYSFGVL |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
