PRGDB00061540 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438180 (FJ842799) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGAGGAGGTCTCTTCCTCTTCCAAAGTCAAGGTACTTCCCTTGCCTCCGCAGTACCAAGTGTTTGTAAACTTCAGGGGAGATGAGTTGCGGTACAACTTTGTTAGCCATCTCACAAGTGCATTGCTCAGAGATGGGGTCAACATCTTCATAGACACGAATGAGGAAAAAGGAAAATCTTTAAATGTGCTTTTCGAGAGGATTGAAGAGTCGAGGATCGCCTTGGCTCTCTTTTCTGTGAGGTACACCGAGTCAAAATGGTGCCTGAACGAACTGCTGAAGATGAAAGAATGCATGGACAAAGGTCAACTCCTCATCATTCCCATCTTTTACAAGGTTCAAGCATACGAAGTTCGGTTTCAGAGGGGACGGTTCGGTTATTTGTTTAACAAGTTGCGCCATGTTGACGTTGACAAGAAGAAGCAGTGGTCTGAAGCTTTGAACTCTGTCGCTGACCGAATAGGCTTCTGCTTCGACGGAAAGAGCGACGAAAACAAGTTCATCCACAGTATCGTCGAAAAGGTTAAGCAAGCGCTGAGAAAAATTCAGTTGGATGAAAGCAAAGGCAACTCTGTTTTTCTTTCAAAAAACACTTCGTTGCGCTTAGGAAGAGAAAACAATGAGATTTATGGACTCAAGCAACGCTTGGACGAATTGGAGGAGAAGTTTGATCTTGACTGTCAGGAGACTCGATATTTGGGAGTTGTTGGGATGCCAGGCATTGGTAAAACCACTCTTGCAAGGGAGTTATATGAAACTTGGCAGTGCAAATTCGTAAGTCACGTGTTAATCCAAGATATTCGTAGAACTTCCAAGGAGCTTGGGTTGGATTGCTTGCCTGCATTACTCTTGGAAGAATTACTCGGTGTAAGAAATTCAGACGTAAAATCTTCTCAAGGCGCCTACGAATCCTACAAGAGTGAACTACTCAAACATAAAGTTCTCGTTGTTCTCGACGATGTGAGTGACAGAAAGCAGATAGAGGTTCTTCTGGGGAGTTGCGACTGGATTAGGCAGGGAAGTAGAATTGTCATTTCAACAAGCGACAAGTCACTAATCCAAGATGTTGTCGACTATACTTATGTTGTCCCACAGTTAAACCACAAAGACGGACTAGGTCACTTTGGGCGTTATGCCTTTGACCATCATTCCAGCAAACACAACAATGAAGTCATCATGAAGCTATCAAAAGAGTTTGTGCATTATGTTAGAGGTCATCCGCTAGCTCTTAAGTTGTTGGGCGCAGATCTTAATGGGAAAGACGAGGGCTATTGGAAAACAATACTGGCAACACTCTCCCAAAGTTCCTGCCCGTGTATTCGAGATGTGTTGGAAGAAAGCTATAATGAGTTGAGTCAAGAGCACAAAGAGATATTTCTCGACATGGCTTGTTTTAGAAGGGAAGATGAGAGTTACGTTGCAAGTTTACTGGATACATCTGAAGCCGCAAGAGAAATAAAAACTCTCATAAACAAATTCATGATAGATGTTTCTGATGGGCGAGTAGAGATGCATGATTTACTATATACCTTCGCCAAGGAGATTTGCCGAAGAGCACATGCTCAAGATGGAAAGGGGGGACATAGGTTGTGGCATCACCAAGATATCATTGATGTACTAAAGAACATAGAGGAAGGCGAGAAAGTTAGAGGGATTTTCCTAAACATGAATGAAATGAAGAGGGAGATGAGCTTAGACAGTTGCACCTTTGAACCAATGCTCGGTCTCAGATACCTCAAGATCTATAGCTCAGGCTGTCCTGAGCAATGCAGACCTAACAATAAGATAAACCTCCCTGATGGACTAAACTTTCCTGTGGAAGAGGTTCGGTATCTCCACTGGCTGGAGTTCCCATTGAAAGAACTTCCACCAGATTTCAACCCTCGCAATCTTGTGGACCTTAAGCTTCCTTACAGCAAGATTGAACGAATCTGGAGTGATGATAAGGATACATCAAAATTGAAGTGGGTCAATCTCAACCATTCCAGTAACTTGCGCGTCTTGTCAGGATTATCAAAGGCTCAAAATCTGCAAAGATTGAACCTTGAAGGCTGCACAAAAATGGAAACTTTACCCCATGATATGCAACATATGAGAAGTCTTCTTGTCCTGAACCTGAACGGGTGCACAAGTCTCAACTCTCTTCCGGAAATAAGTTTGGTGTCACTAGAAACTCTCATCCTCAGCAACTGCTCAAACCTGAAGGAATTCCGGGTGATCTCACAAAATCTAGAAGCTCTATACTTGGATGGCACTTCAGTGAAAAAACTCCCTCTGGATATCAAAATACTGAAGAGACTTGCCTTGTTGAATATGAAAGGATGCACGAAGCTGAAGGAATTTCCTGATTGTCTTGATGACTTGAAAGCTCTCAAGGAATTGATACTCTCAGATTGCTCGAAGCTCCAACAATTTCCTGCAAACGGCGAAAGCATCAAGGTTTTAGAGACATTGCGATTGGATGCGACAGGCTTAACTGAGATTCCGAAGATATCCTCCTTACAGTGTTTATGCTTAAGCAAGAATGATCAGATCATCTCCCTTCCAGATAACATCAGTCAACTCTATCAACTAAAATGGTTGGACTTGAAGTATTGCAAGAGTCTTACATCTATTCCAAAGCTTCCACCAAATCTTCAGCACTTTGATGCACATGGCTGTTGCTCACTTAAAACAGTCTCGAATCCACTGGCATGTCTTACGACAACTCAACAGATCTGTTCCACGTTCATATTCACGAGCTGCAACAAACTTGAGATGAGTGCGAAGAAAGATATATCTTCCTTTGCTCAAAGGAAATGCCAGCTGCTTTCAGATGCACAAAACTGCTGCAATGTTTCGGATTTGGAGCCTTTGTTCAGTACTTGCTTTCCTGGAAGTGAACTACCTTCATGGTTAGGTCATGAAGCCGTTGGATGTATGTTAGAGCTCAGAATGCCCCCACATTGGCGCGAAAATAAGCTTGCCGGTCTAGCTTTATGTGCTGTTGTCTCATTTCCAAACTCCCAGGTACAAATGAAGTGTTTTTCGGTGAAATGCACACTGAAGATAGAAGTAAAAGAAGGGTCGTGGATCGACTTTTCTTTCCCAGTTGGAAGTTTGAGAAATCAGGACAATGTTGTAGAGAATACTGCGTCACCAGAGCATATCTTTATTGGTTATATCAGCTGTTCAAAGATCTTTAAACGTCTTGAAAGCCAGCATTTTATCAGCCCTGATCCTACGAAGTCCACTCTATCTAGTAAATGTAGTCCTACCAAGGCCTCCTTTAAATTCACGGTCACAGATGGTACGAGCGAGATACCGGGGCTCGAAGTGCTCAAGTGTGGCTTAAGGTTTTTTATAGGTGGTGAGAGCAGTGGAGATTGTTTAAAGAAGTTGGAAGTGAAAGATGCTGAACAGAATCCAAGTGCACAAAAGTTATCAGATAATTGGACGAGTGAATCAGATACCACTACTGAGGTTGCTGTTTCGCCTGAAAATGCAAACAGTGCAGAACAGAGCCCAGAGACGGTTACAACAGCGGTTACGGCTTCACCAGAAAAAGCTAACAGTGCAGAATTTCAAATGGAAATCTCCACAACCCCACGTGAAGGTCAACCACGCCCATATATAAAAACTTCGAAATGGGTTGCACGGGTACTCCAAGTTGGTGCCGTCTCACGTATCGGGTTCGTCGGGGGGACGGGGACGTCTCGGGTACGCCTAGGAAACGTCCCCAATATGTGTGAGGTGAACCCGGGACGTCAAGCCTCATCGGGTACGGGCTTGGTCAGAGAAGGAGACGTTCCGGAAACGTTTCCGCAGAAAATAGACGTATCCATCTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MEEVSSSSKVKVLPLPPQYQVFVNFRGDELRYNFVSHLTSALLRDGVNIFIDTNEEKGKSLNVLFERIEESRIALALFSVRYTESKWCLNELLKMKECMDKGQLLIIPIFYKVQAYEVRFQRGRFGYLFNKLRHVDVDKKKQWSEALNSVADRIGFCFDGKSDENKFIHSIVEKVKQALRKIQLDESKGNSVFLSKNTSLRLGRENNEIYGLKQRLDELEEKFDLDCQETRYLGVVGMPGIGKTTLARELYETWQCKFVSHVLIQDIRRTSKELGLDCLPALLLEELLGVRNSDVKSSQGAYESYKSELLKHKVLVVLDDVSDRKQIEVLLGSCDWIRQGSRIVISTSDKSLIQDVVDYTYVVPQLNHKDGLGHFGRYAFDHHSSKHNNEVIMKLSKEFVHYVRGHPLALKLLGADLNGKDEGYWKTILATLSQSSCPCIRDVLEESYNELSQEHKEIFLDMACFRREDESYVASLLDTSEAAREIKTLINKFMIDVSDGRVEMHDLLYTFAKEICRRAHAQDGKGGHRLWHHQDIIDVLKNIEEGEKVRGIFLNMNEMKREMSLDSCTFEPMLGLRYLKIYSSGCPEQCRPNNKINLPDGLNFPVEEVRYLHWLEFPLKELPPDFNPRNLVDLKLPYSKIERIWSDDKDTSKLKWVNLNHSSNLRVLSGLSKAQNLQRLNLEGCTKMETLPHDMQHMRSLLVLNLNGCTSLNSLPEISLVSLETLILSNCSNLKEFRVISQNLEALYLDGTSVKKLPLDIKILKRLALLNMKGCTKLKEFPDCLDDLKALKELILSDCSKLQQFPANGESIKVLETLRLDATGLTEIPKISSLQCLCLSKNDQIISLPDNISQLYQLKWLDLKYCKSLTSIPKLPPNLQHFDAHGCCSLKTVSNPLACLTTTQQICSTFIFTSCNKLEMSAKKDISSFAQRKCQLLSDAQNCCNVSDLEPLFSTCFPGSELPSWLGHEAVGCMLELRMPPHWRENKLAGLALCAVVSFPNSQVQMKCFSVKCTLKIEVKEGSWIDFSFPVGSLRNQDNVVENTASPEHIFIGYISCSKIFKRLESQHFISPDPTKSTLSSKCSPTKASFKFTVTDGTSEIPGLEVLKCGLRFFIGGESSGDCLKKLEVKDAEQNPSAQKLSDNWTSESDTTTEVAVSPENANSAEQSPETVTTAVTASPEKANSAEFQMEISTTPREGQPRPYIKTSKWVARVLQVGAVSRIGFVGGTGTSRVRLGNVPNMCEVNPGRQASSGTGLVREGDVPETFPQKIDVSI |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
7-156 | TIR Toll-Interleukin receptor
|
SSKVKVLPLPPQYQVFVNFRGDELRYNFVSHLTSALLRDGVNIFIDTNEEKGKSLNVLFERIEESRIALALFSVRYTESKWCLNELLKMKECMDKGQLLIIPIFYKVQAYEVRFQRGRFGYLFNKLRHVDVDKKKQWSEALNSVADRIGF |
| ProfileScan: PS50104 IPR000157
|
17-153 | TIR Toll-Interleukin receptor
|
PQYQVFVNFRGDELRYNFVSHLTSALLRDGVNIFIDTNEEKGKSLNVLFERIEESRIALALFSVRYTESKWCLNELLKMKECMDKGQLLIIPIFYKVQAYEVRFQRGRFGYLFNKLRHVDVDKKKQWSEALNSVADR |
| Gene3D: G3DSA:3.40.50.10140 | 18-150 | G3DSA:3.40.50.10140 | QYQVFVNFRGDELRYNFVSHLTSALLRDGVNIFIDTNEEKGKSLNVLFERIEESRIALALFSVRYTESKWCLNELLKMKECMDKGQLLIIPIFYKVQAYEVRFQRGRFGYLFNKLRHVDVDKKKQWSEALNSV |
| HMMSmart: SM00255 IPR000157
|
18-153 | TIR Toll-Interleukin receptor
|
QYQVFVNFRGDELRYNFVSHLTSALLRDGVNIFIDTNEEKGKSLNVLFERIEESRIALALFSVRYTESKWCLNELLKMKECMDKGQLLIIPIFYKVQAYEVRFQRGRFGYLFNKLRHVDVDKKKQWSEALNSVADR |
| HMMPfam: PF01582 IPR000157
|
21-148 | TIR Toll-Interleukin receptor
|
VFVNFRGDELRYNFVSHLTSALLRDGVNIFIDTNEEKGKSLNVLFERIEESRIALALFSVRYTESKWCLNELLKMKECMDKGQLLIIPIFYKVQAYEVRFQRGRFGYLFNKLRHVDVDKKKQWSEALN |
| HMMPanther: PTHR11017 | 58-1051 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | GKSLNVLFERIEESRIALALFSVRYTESKWCLNELLKMKECMDKGQLLIIPIFYKVQAYEVRFQRGRFGYLFNKLRHVDVDKKKQWSEALNSVADRIGFCFDGKSDENKFIHSIVEKVKQALRKIQLDESKGNSVFLSKNTSLRLGRENNEIYGLKQRLDELEEKFDLDCQETRYLGVVGMPGIGKTTLARELYETWQCKFVSHVLIQDIRRTSKELGLDCLPALLLEELLGVRNSDVKSSQGAYESYKSELLKHKVLVVLDDVSDRKQIEVLLGSCDWIRQGSRIVISTSDKSLIQDVVDYTYVVPQLNHKDGLGHFGRYAFDHHSSKHNNEVIMKLSKEFVHYVRGHPLALKLLGADLNGKDEGYWKTILATLSQSSCPCIRDVLEESYNELSQEHKEIFLDMACFRREDESYVASLLDTSEAAREIKTLINKFMIDVSDGRVEMHDLLYTFAKEICRRAHAQDGKGGHRLWHHQDIIDVLKNIEEGEKVRGIFLNMNEMKREMSLDSCTFEPMLGLRYLKIYSSGCPEQCRPNNKINLPDGLNFPVEEVRYLHWLEFPLKELPPDFNPRNLVDLKLPYSKIERIWSDDKDTSKLKWVNLNHSSNLRVLSGLSKAQNLQRLNLEGCTKMETLPHDMQHMRSLLVLNLNGCTSLNSLPEISLVSLETLILSNCSNLKEFRVISQNLEALYLDGTSVKKLPLDIKILKRLALLNMKGCTKLKEFPDCLDDLKALKELILSDCSKLQQFPANGESIKVLETLRLDATGLTEIPKISSLQCLCLSKNDQIISLPDNISQLYQLKWLDLKYCKSLTSIPKLPPNLQHFDAHGCCSLKTVSNPLACLTTTQQICSTFIFTSCNKLEMSAKKDISSFAQRKCQLLSDAQNCCNVSDLEPLFSTCFPGSELPSWLGHEAVGCMLELRMPPHWRENKLAGLALCAVVSFPNSQVQMKCFSVKCTLKIEVKEGSWIDFSFPVGSLRNQDNVVENTASPEHIF |
| HMMPanther: PTHR11017:SF20 | 58-1051 | PTHR11017:SF20,SUBFAMILY NOT NAMED | GKSLNVLFERIEESRIALALFSVRYTESKWCLNELLKMKECMDKGQLLIIPIFYKVQAYEVRFQRGRFGYLFNKLRHVDVDKKKQWSEALNSVADRIGFCFDGKSDENKFIHSIVEKVKQALRKIQLDESKGNSVFLSKNTSLRLGRENNEIYGLKQRLDELEEKFDLDCQETRYLGVVGMPGIGKTTLARELYETWQCKFVSHVLIQDIRRTSKELGLDCLPALLLEELLGVRNSDVKSSQGAYESYKSELLKHKVLVVLDDVSDRKQIEVLLGSCDWIRQGSRIVISTSDKSLIQDVVDYTYVVPQLNHKDGLGHFGRYAFDHHSSKHNNEVIMKLSKEFVHYVRGHPLALKLLGADLNGKDEGYWKTILATLSQSSCPCIRDVLEESYNELSQEHKEIFLDMACFRREDESYVASLLDTSEAAREIKTLINKFMIDVSDGRVEMHDLLYTFAKEICRRAHAQDGKGGHRLWHHQDIIDVLKNIEEGEKVRGIFLNMNEMKREMSLDSCTFEPMLGLRYLKIYSSGCPEQCRPNNKINLPDGLNFPVEEVRYLHWLEFPLKELPPDFNPRNLVDLKLPYSKIERIWSDDKDTSKLKWVNLNHSSNLRVLSGLSKAQNLQRLNLEGCTKMETLPHDMQHMRSLLVLNLNGCTSLNSLPEISLVSLETLILSNCSNLKEFRVISQNLEALYLDGTSVKKLPLDIKILKRLALLNMKGCTKLKEFPDCLDDLKALKELILSDCSKLQQFPANGESIKVLETLRLDATGLTEIPKISSLQCLCLSKNDQIISLPDNISQLYQLKWLDLKYCKSLTSIPKLPPNLQHFDAHGCCSLKTVSNPLACLTTTQQICSTFIFTSCNKLEMSAKKDISSFAQRKCQLLSDAQNCCNVSDLEPLFSTCFPGSELPSWLGHEAVGCMLELRMPPHWRENKLAGLALCAVVSFPNSQVQMKCFSVKCTLKIEVKEGSWIDFSFPVGSLRNQDNVVENTASPEHIF |
| Gene3D: G3DSA:3.40.50.300 | 207-357 | G3DSA:3.40.50.300 | NEIYGLKQRLDELEEKFDLDCQETRYLGVVGMPGIGKTTLARELYETWQCKFVSHVLIQDIRRTSKELGLDCLPALLLEELLGVRNSDVKSSQGAYESYKSELLKHKVLVVLDDVSDRKQIEVLLGSCDWIRQGSRIVISTSDKSLIQDVV |
| superfamily: SSF52540 | 208-440 | SSF52540 | EIYGLKQRLDELEEKFDLDCQETRYLGVVGMPGIGKTTLARELYETWQCKFVSHVLIQDIRRTSKELGLDCLPALLLEELLGVRNSDVKSSQGAYESYKSELLKHKVLVVLDDVSDRKQIEVLLGSCDWIRQGSRIVISTSDKSLIQDVVDYTYVVPQLNHKDGLGHFGRYAFDHHSSKHNNEVIMKLSKEFVHYVRGHPLALKLLGADLNGKDEGYWKTILATLSQSSCPCI |
| HMMPfam: PF00931 IPR002182
|
213-478 | NB-ARC,NBS NB-ARC
|
KQRLDELEEKFDLDCQETRYLGVVGMPGIGKTTLARELYETWQCKFVSHVLIQDIRRTSKELGLDCLPALLLEELLGVRNSDVKSSQGAYESYKSELLKHKVLVVLDDVSDRKQIEVLLGSCDWIRQGSRIVISTSDKSLIQDVVDYTYVVPQLNHKDGLGHFGRYAFDHHSSKHNNEVIMKLSKEFVHYVRGHPLALKLLGADLNGKDEGYWKTILATLSQSSCPCIRDVLEESYNELSQEHKEIFLDMACFRREDESYVASLLD |
| FPrintScan: PR00364 IPR000767
|
232-247 | DISEASERSIST Disease resistance protein
|
YLGVVGMPGIGKTTLA |
| FPrintScan: PR00364 IPR000767
|
308-322 | DISEASERSIST Disease resistance protein
|
ELLKHKVLVVLDDVS |
| FPrintScan: PR00364 IPR000767
|
403-417 | DISEASERSIST Disease resistance protein
|
VRGHPLALKLLGADL |
| superfamily: SSF46785 | 438-541 | SSF46785 | PCIRDVLEESYNELSQEHKEIFLDMACFRREDESYVASLLDTSEAAREIKTLINKFMIDVSDGRVEMHDLLYTFAKEICRRAHAQDGKGGHRLWHHQDIIDVLK |
| superfamily: SSF52058 | 503-958 | SSF52058,LRR | EMHDLLYTFAKEICRRAHAQDGKGGHRLWHHQDIIDVLKNIEEGEKVRGIFLNMNEMKREMSLDSCTFEPMLGLRYLKIYSSGCPEQCRPNNKINLPDGLNFPVEEVRYLHWLEFPLKELPPDFNPRNLVDLKLPYSKIERIWSDDKDTSKLKWVNLNHSSNLRVLSGLSKAQNLQRLNLEGCTKMETLPHDMQHMRSLLVLNLNGCTSLNSLPEISLVSLETLILSNCSNLKEFRVISQNLEALYLDGTSVKKLPLDIKILKRLALLNMKGCTKLKEFPDCLDDLKALKELILSDCSKLQQFPANGESIKVLETLRLDATGLTEIPKISSLQCLCLSKNDQIISLPDNISQLYQLKWLDLKYCKSLTSIPKLPPNLQHFDAHGCCSLKTVSNPLACLTTTQQICSTFIFTSCNKLEMSAKKDISSFAQRKCQLLSDAQNCCNVSDLEPLFSTCFP |
| Gene3D: G3DSA:3.80.10.10 | 590-815 | G3DSA:3.80.10.10 | CRPNNKINLPDGLNFPVEEVRYLHWLEFPLKELPPDFNPRNLVDLKLPYSKIERIWSDDKDTSKLKWVNLNHSSNLRVLSGLSKAQNLQRLNLEGCTKMETLPHDMQHMRSLLVLNLNGCTSLNSLPEISLVSLETLILSNCSNLKEFRVISQNLEALYLDGTSVKKLPLDIKILKRLALLNMKGCTKLKEFPDCLDDLKALKELILSDCSKLQQFPANGESIKVL |
| HMMPfam: PF07725 IPR011713
|
630-648 | LRR_3 Leucine-rich repeat 3
|
NLVDLKLPYSKIERIWSDD |
| HMMPfam: PF00560 IPR001611
|
676-697 | LRR_1 Leucine-rich repeat
|
NLQRLNLEGCTKMETLPHDMQH |
| FPrintScan: PR00364 IPR000767
|
718-734 | DISEASERSIST Disease resistance protein
|
ISLVSLETLILSNCSNL |
| Gene3D: G3DSA:3.80.10.10 | 816-907 | G3DSA:3.80.10.10 | ETLRLDATGLTEIPKISSLQCLCLSKNDQIISLPDNISQLYQLKWLDLKYCKSLTSIPKLPPNLQHFDAHGCCSLKTVSNPLACLTTTQQIC |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
