PRGDB00061543 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438174 (FJ842796) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGATTCTTCTTTTTTCCTTACCACTGTTGCTGCTGCAATAGGTCTGTTTATCCTTACCACTGTTGCTGCTGCAATAGGTCTCTTTACTCTTTTGAGAAAACTTAGATTACATCAAGATGATAACAGAGAAAAGGATTCTTCTTCTTCATCACCTTCATCTTCTTTGTCTCCTTCACCAGTTCCTCCACCTTCTTCTTCTCGCATCTGGACGCATCATGTCTTTCCCAGCTTCCGCGGGGAAGATGTCCGCAAAGACTTTCTTAGCCACATTCAGATGGAGTTCCAAAGAAAAGGAATCACACCATTCATTGATAATGAAATTAAAAGAAGAGATGATATTGGTCCGGAGCTCATCAGGGCCATTAGAGGATCTAAGATTGCAATTATCTTGCTCTCTAGGAACTATGCCTCCTCAAAATGGTGTCTTGATGAACTGGTGGAGATTATGAAGTGCAGAGAAGAGTTGGGTCAAACTGTAATGGCTATTTTCTACAGAGTGGATCCATCTGATGTGAAAAAGCTAGCAGGAGATTTTGGGAGAGTCTTTAAAAAAACTTGTGCTGGTAGAACGAAGGAAAACATTGAGAGATGGAGACAAGCTTTGGCAAAAGTGGCCACAATCGCTGGCTATCATTCAAGCAACTGGGATAATGAAGCGGCCATGATCAAGAAAATCGCCACTGATATCTCGGACATGCTGAATAATTTCACACCATCAAATGATTTTGACGGGTTAGTTGGGATGGGAGCTCATTTGGAAAAGATGGAGCCATTGTTATGCCTAGGCTCAGATGAGGTGAGGATGATTGGGATTTGGGGTCCTCCTGGGATTGGGAAGACCACAATCGCTAGAGTCGCATACAGCAAACTCTCCAACAATTTTCAACTGAGTGTCTTTATGGATGATCTCAAAGCAAACTATACAAGACTGTGTTCAGATGACTACAGCTTAAAGTTGCAACTACAACAACAATTTATGTCTCAGATAACCAACCAAAAGGATATGGTGGTTTCTCATTTGGGAGTTGCGTCAAATAGGTTGAAGGACAAGAAAGTTCTTGTTGTTCTTGATGGTGTGGACCAGTCAGTACAACTAGAAGCAATGGCAAAAGAGACTTGGTGGTTTGGTCCTGGGAGTCGGATTATAATCACAGCACAAGATCAGAAACTTTTTAGAGCACATGGGGTCAACCTTATTTACAAGGTGAATTTTCCTACAGATGATGAGGCTCTTCAAATATTTTGTACGTATTCTTTTGGTCAAAAGTCCCCTAAAGATGGTTTTGAGGAGCTTGCTCGAGAAGTTACAAGACTTGCTGGTGAACTCCCTTTGGGGCTAAGGGTTATGGGTTCATACTTTCGAGGAATGTCCAAGCAAGAGTGGACTAATTCGCTACCAAGATTGAAGACTAGCCTTGATTCTGATATTCGAAGCATTTTGAAGTTCAGCTATGATGCTTTAGATGATGAAGATAAAGATTTATTTCTTCATATAGCCTGCTTCTTCAACTCTCAAGAGATTCACAAAGTGGAAGAGCATCTTGCAAAGAAATTCTTGGAAGTGAGGCAAAGACTTAACGTCTTAGCTGAGAAATCTCTCATATCTATCGACTCGGGAGTTATAACGATGCATAGTTTGCTAGAAAAACTTGGTAGAGAAATAGTTTGTAAACAATCTATTCATGAGCCTAGACTACGCCAGTTTCTGTGGGAGGAAACAGAGATTTTTGAAGTACTGACTGGTGATACAACAGGTAGTAAAAGTGTCATAGGCATAAAGTTAAAATACAACACAGAGGGTGAAAAAATAGAAATAAGTGAGAAAGCCTTTGAAGGAATGTCAAATCTCCAATTCTTAAAAGTCTCTGGTTATAGCCATCCATTGCAATTAACTCGAGGTCTGAACTATATATCTCATAAACTTCGATTTCTACAGTGGACTCATTTTCCAATGACATGTTTACCTTCCATCCTGAACTTGGAGTTCCTTGTCGAACTAATCATGCATACAAGCAAGCTTGAGAAGTTGTGGGAAGGAACTAAACCGCTTCGATGTCTCAAGTGGATGGATTTGAGTTATTCTGAAAATTTGAAGGAGCTTCCTGATCTCTCAACTGCCACTAACCTTGAATTGGATCTTAGTAATTGCTCGAGTCTAATCAAACTCCCTTACTTGAATGGAAATAGTCTGGAGAAATTATATATTGGCGGATGCTCAAGTCTTGTGGAGTTTCCCTCCTTTATTGAGAATGCCGTTAGTCTCCGAAAGTTGGATCTTACAAGTTACCCAAATCTATTGGAGCTCCCTTCTTATGTTGGGAATGCCACCAACTTGGATGAGTTGTATCTTAGTAATTGCTTAGATCTGGTGGAACTTCCTCTCTCTCTTGGAAACCTTCAGAAATTGAAGAAACTGGTATTAAAAGGATGTAGTAAGCTAGAGGTTTTTCCCACCAACTTCAACGTGGAGTCTTTGGAAATACTTTGTCTCGCTGGATGCTCAAGTCTCGATCTCGGTGGATGCTCCACTATCGGAAATGTCCCCAGTCTCCGAATGTTGAACTTAAGAAGTCTACCACAATTGTTGGATCTCCCTTCCTTTATTGGCAATGCCATTAATCTATATTACTTGGACCTTAGTGGTTGCTCAAATCTGGTGGAACTTCCTGTTTTCATTGGAAACCTTCAGAAGTTGTATATGCTAGGATTAGAAGGATGCTCTAAGCTAGAGTTTCTTCCCACCAACATCAACTTGGAATCTTTGAGTTGGCTTAATCTCCGTGATTGCTCCATGTTGAAATGTTTTCCTCAGATCTCCACAAACATTAGAGATCTCGACCTCACAGGAACTGCGATAGAACAAGTGCCTCCGTCGATCAGGTCATGGCCTCGTCTTGAGGATTTGACGATGTCATACTTTGAGAACCTCAAGGAATTCCCTCATGCTCTTGAAAGAATCACAGAACTGTGCTTGACCGACACAGATATACAAGAGCTTCCTCCGTGGGTCAAGCAAATCTCTTGTCTGAATAGTTTTGTGCTCAAGGGATGCCGAAAGTTGGTATCGATCCCGCCAATTTCGGATTCCATCCGTTTCCTGGATGCAAGTGACTGCGAGTCCCTGGAGATACTAGAGTGCTCCTTTCACAATCAAATCAGTAGGCTCAACTTTGCCAACTGCTTCAAACTGAATCAAGAGGCGAGAGACCTCATCATCCAGAATAGTCGAGAGGCAGTCTTACCAGGTGGACAAGTGCCTGCATACTTCACTCACCGAGCTACTGGTGGAGGTCCATTATCAATCAAGTTGAATGAAAAGCCTCTTCCAAAATCCTTGAGATTTAAAGCCTGCATCTTGCTGGTTGATAAAGGTGACCATGACGCTTGCTCTAAAGAGAAATCCACAGAAGTGTTTGCTATGTATAAAAATCGCCATCATAGGTTATATCCAGCTCTAGCACAGCATCTGTACACATTTGAAGTCGAAAAGGAGGTGACTTCCAGCGAGCTTCTCTTTGAGTTCAAGCTGGAAAGCGATGACGTTTGGAAGATAGGAGAATGCGGGATAGTACAACACTTGGAGTGTATTAGCATGATGCAGATGCAGCGGAGTTCTAATACTCAAAATGGCGATGGCCACGTTGCTACTTTGGGTTCGGGACTTGGTCTTGGCGGGAAACCAACCCGATCAGTTGTACGTCCATGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MDSSFFLTTVAAAIGLFILTTVAAAIGLFTLLRKLRLHQDDNREKDSSSSSPSSSLSPSPVPPPSSSRIWTHHVFPSFRGEDVRKDFLSHIQMEFQRKGITPFIDNEIKRRDDIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREELGQTVMAIFYRVDPSDVKKLAGDFGRVFKKTCAGRTKENIERWRQALAKVATIAGYHSSNWDNEAAMIKKIATDISDMLNNFTPSNDFDGLVGMGAHLEKMEPLLCLGSDEVRMIGIWGPPGIGKTTIARVAYSKLSNNFQLSVFMDDLKANYTRLCSDDYSLKLQLQQQFMSQITNQKDMVVSHLGVASNRLKDKKVLVVLDGVDQSVQLEAMAKETWWFGPGSRIIITAQDQKLFRAHGVNLIYKVNFPTDDEALQIFCTYSFGQKSPKDGFEELAREVTRLAGELPLGLRVMGSYFRGMSKQEWTNSLPRLKTSLDSDIRSILKFSYDALDDEDKDLFLHIACFFNSQEIHKVEEHLAKKFLEVRQRLNVLAEKSLISIDSGVITMHSLLEKLGREIVCKQSIHEPRLRQFLWEETEIFEVLTGDTTGSKSVIGIKLKYNTEGEKIEISEKAFEGMSNLQFLKVSGYSHPLQLTRGLNYISHKLRFLQWTHFPMTCLPSILNLEFLVELIMHTSKLEKLWEGTKPLRCLKWMDLSYSENLKELPDLSTATNLELDLSNCSSLIKLPYLNGNSLEKLYIGGCSSLVEFPSFIENAVSLRKLDLTSYPNLLELPSYVGNATNLDELYLSNCLDLVELPLSLGNLQKLKKLVLKGCSKLEVFPTNFNVESLEILCLAGCSSLDLGGCSTIGNVPSLRMLNLRSLPQLLDLPSFIGNAINLYYLDLSGCSNLVELPVFIGNLQKLYMLGLEGCSKLEFLPTNINLESLSWLNLRDCSMLKCFPQISTNIRDLDLTGTAIEQVPPSIRSWPRLEDLTMSYFENLKEFPHALERITELCLTDTDIQELPPWVKQISCLNSFVLKGCRKLVSIPPISDSIRFLDASDCESLEILECSFHNQISRLNFANCFKLNQEARDLIIQNSREAVLPGGQVPAYFTHRATGGGPLSIKLNEKPLPKSLRFKACILLVDKGDHDACSKEKSTEVFAMYKNRHHRLYPALAQHLYTFEVEKEVTSSELLFEFKLESDDVWKIGECGIVQHLECISMMQMQRSSNTQNGDGHVATLGSGLGLGGKPTRSVVRP |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
60-211 | TIR Toll-Interleukin receptor
|
PVPPPSSSRIWTHHVFPSFRGEDVRKDFLSHIQMEFQRKGITPFIDNEIKRRDDIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREELGQTVMAIFYRVDPSDVKKLAGDFGRVFKKTCAGRTKENIERWRQALAKVATIAGY |
| ProfileScan: PS50104 IPR000157
|
70-208 | TIR Toll-Interleukin receptor
|
WTHHVFPSFRGEDVRKDFLSHIQMEFQRKGITPFIDNEIKRRDDIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREELGQTVMAIFYRVDPSDVKKLAGDFGRVFKKTCAGRTKENIERWRQALAKVATI |
| Gene3D: G3DSA:3.40.50.10140 | 70-207 | G3DSA:3.40.50.10140 | WTHHVFPSFRGEDVRKDFLSHIQMEFQRKGITPFIDNEIKRRDDIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREELGQTVMAIFYRVDPSDVKKLAGDFGRVFKKTCAGRTKENIERWRQALAKVAT |
| HMMSmart: SM00255 IPR000157
|
71-208 | TIR Toll-Interleukin receptor
|
THHVFPSFRGEDVRKDFLSHIQMEFQRKGITPFIDNEIKRRDDIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREELGQTVMAIFYRVDPSDVKKLAGDFGRVFKKTCAGRTKENIERWRQALAKVATI |
| HMMPfam: PF01582 IPR000157
|
74-203 | TIR Toll-Interleukin receptor
|
VFPSFRGEDVRKDFLSHIQMEFQRKGITPFIDNEIKRRDDIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREELGQTVMAIFYRVDPSDVKKLAGDFGRVFKKTCAGRTKENIERWRQALA |
| HMMPanther: PTHR11017 | 95-1096 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | FQRKGITPFIDNEIKRRDDIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREELGQTVMAIFYRVDPSDVKKLAGDFGRVFKKTCAGRTKENIERWRQALAKVATIAGYHSSNWDNEAAMIKKIATDISDMLNNFTPSNDFDGLVGMGAHLEKMEPLLCLGSDEVRMIGIWGPPGIGKTTIARVAYSKLSNNFQLSVFMDDLKANYTRLCSDDYSLKLQLQQQFMSQITNQKDMVVSHLGVASNRLKDKKVLVVLDGVDQSVQLEAMAKETWWFGPGSRIIITAQDQKLFRAHGVNLIYKVNFPTDDEALQIFCTYSFGQKSPKDGFEELAREVTRLAGELPLGLRVMGSYFRGMSKQEWTNSLPRLKTSLDSDIRSILKFSYDALDDEDKDLFLHIACFFNSQEIHKVEEHLAKKFLEVRQRLNVLAEKSLISIDSGVITMHSLLEKLGREIVCKQSIHEPRLRQFLWEETEIFEVLTGDTTGSKSVIGIKLKYNTEGEKIEISEKAFEGMSNLQFLKVSGYSHPLQLTRGLNYISHKLRFLQWTHFPMTCLPSILNLEFLVELIMHTSKLEKLWEGTKPLRCLKWMDLSYSENLKELPDLSTATNLELDLSNCSSLIKLPYLNGNSLEKLYIGGCSSLVEFPSFIENAVSLRKLDLTSYPNLLELPSYVGNATNLDELYLSNCLDLVELPLSLGNLQKLKKLVLKGCSKLEVFPTNFNVESLEILCLAGCSSLDLGGCSTIGNVPSLRMLNLRSLPQLLDLPSFIGNAINLYYLDLSGCSNLVELPVFIGNLQKLYMLGLEGCSKLEFLPTNINLESLSWLNLRDCSMLKCFPQISTNIRDLDLTGTAIEQVPPSIRSWPRLEDLTMSYFENLKEFPHALERITELCLTDTDIQELPPWVKQISCLNSFVLKGCRKLVSIPPISDSIRFLDASDCESLEILECSFHNQISRLNFANCFKLNQEARDLIIQNSREAVLPGGQVPAYFTHRATG |
| HMMPanther: PTHR11017:SF20 | 95-1096 | PTHR11017:SF20,SUBFAMILY NOT NAMED | FQRKGITPFIDNEIKRRDDIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREELGQTVMAIFYRVDPSDVKKLAGDFGRVFKKTCAGRTKENIERWRQALAKVATIAGYHSSNWDNEAAMIKKIATDISDMLNNFTPSNDFDGLVGMGAHLEKMEPLLCLGSDEVRMIGIWGPPGIGKTTIARVAYSKLSNNFQLSVFMDDLKANYTRLCSDDYSLKLQLQQQFMSQITNQKDMVVSHLGVASNRLKDKKVLVVLDGVDQSVQLEAMAKETWWFGPGSRIIITAQDQKLFRAHGVNLIYKVNFPTDDEALQIFCTYSFGQKSPKDGFEELAREVTRLAGELPLGLRVMGSYFRGMSKQEWTNSLPRLKTSLDSDIRSILKFSYDALDDEDKDLFLHIACFFNSQEIHKVEEHLAKKFLEVRQRLNVLAEKSLISIDSGVITMHSLLEKLGREIVCKQSIHEPRLRQFLWEETEIFEVLTGDTTGSKSVIGIKLKYNTEGEKIEISEKAFEGMSNLQFLKVSGYSHPLQLTRGLNYISHKLRFLQWTHFPMTCLPSILNLEFLVELIMHTSKLEKLWEGTKPLRCLKWMDLSYSENLKELPDLSTATNLELDLSNCSSLIKLPYLNGNSLEKLYIGGCSSLVEFPSFIENAVSLRKLDLTSYPNLLELPSYVGNATNLDELYLSNCLDLVELPLSLGNLQKLKKLVLKGCSKLEVFPTNFNVESLEILCLAGCSSLDLGGCSTIGNVPSLRMLNLRSLPQLLDLPSFIGNAINLYYLDLSGCSNLVELPVFIGNLQKLYMLGLEGCSKLEFLPTNINLESLSWLNLRDCSMLKCFPQISTNIRDLDLTGTAIEQVPPSIRSWPRLEDLTMSYFENLKEFPHALERITELCLTDTDIQELPPWVKQISCLNSFVLKGCRKLVSIPPISDSIRFLDASDCESLEILECSFHNQISRLNFANCFKLNQEARDLIIQNSREAVLPGGQVPAYFTHRATG |
| superfamily: SSF52540 | 125-497 | SSF52540 | SKIAIILLSRNYASSKWCLDELVEIMKCREELGQTVMAIFYRVDPSDVKKLAGDFGRVFKKTCAGRTKENIERWRQALAKVATIAGYHSSNWDNEAAMIKKIATDISDMLNNFTPSNDFDGLVGMGAHLEKMEPLLCLGSDEVRMIGIWGPPGIGKTTIARVAYSKLSNNFQLSVFMDDLKANYTRLCSDDYSLKLQLQQQFMSQITNQKDMVVSHLGVASNRLKDKKVLVVLDGVDQSVQLEAMAKETWWFGPGSRIIITAQDQKLFRAHGVNLIYKVNFPTDDEALQIFCTYSFGQKSPKDGFEELAREVTRLAGELPLGLRVMGSYFRGMSKQEWTNSLPRLKTSLDSDIRSILKFSYDALDDEDKDLFL |
| Gene3D: G3DSA:3.40.50.300 | 242-283 | G3DSA:3.40.50.300 | DFDGLVGMGAHLEKMEPLLCLGSDEVRMIGIWGPPGIGKTTI |
| HMMPfam: PF00931 IPR002182
|
252-511 | NB-ARC,NBS NB-ARC
|
HLEKMEPLLCLGSDEVRMIGIWGPPGIGKTTIARVAYSKLSNNFQLSVFMDDLKANYTRLCSDDYSLKLQLQQQFMSQITNQKDMVVSHLGVASNRLKDKKVLVVLDGVDQSVQLEAMAKETWWFGPGSRIIITAQDQKLFRAHGVNLIYKVNFPTDDEALQIFCTYSFGQKSPKDGFEELAREVTRLAGELPLGLRVMGSYFRGMSKQEWTNSLPRLKTSLDSDIRSILKFSYDALDDEDKDLFLHIACFFNSQEIHKV |
| FPrintScan: PR00364 IPR000767
|
269-284 | DISEASERSIST Disease resistance protein
|
MIGIWGPPGIGKTTIA |
| Gene3D: G3DSA:3.40.50.300 | 284-393 | G3DSA:3.40.50.300 | ARVAYSKLSNNFQLSVFMDDLKANYTRLCSDDYSLKLQLQQQFMSQITNQKDMVVSHLGVASNRLKDKKVLVVLDGVDQSVQLEAMAKETWWFGPGSRIIITAQDQKLFR |
| FPrintScan: PR00364 IPR000767
|
347-361 | DISEASERSIST Disease resistance protein
|
RLKDKKVLVVLDGVD |
| FPrintScan: PR00364 IPR000767
|
440-454 | DISEASERSIST Disease resistance protein
|
AGELPLGLRVMGSYF |
| superfamily: SSF52058 | 555-841 | SSF52058,LRR | IVCKQSIHEPRLRQFLWEETEIFEVLTGDTTGSKSVIGIKLKYNTEGEKIEISEKAFEGMSNLQFLKVSGYSHPLQLTRGLNYISHKLRFLQWTHFPMTCLPSILNLEFLVELIMHTSKLEKLWEGTKPLRCLKWMDLSYSENLKELPDLSTATNLELDLSNCSSLIKLPYLNGNSLEKLYIGGCSSLVEFPSFIENAVSLRKLDLTSYPNLLELPSYVGNATNLDELYLSNCLDLVELPLSLGNLQKLKKLVLKGCSKLEVFPTNFNVESLEILCLAGCSSLDLGG |
| Gene3D: G3DSA:3.80.10.10 | 589-764 | G3DSA:3.80.10.10 | SVIGIKLKYNTEGEKIEISEKAFEGMSNLQFLKVSGYSHPLQLTRGLNYISHKLRFLQWTHFPMTCLPSILNLEFLVELIMHTSKLEKLWEGTKPLRCLKWMDLSYSENLKELPDLSTATNLELDLSNCSSLIKLPYLNGNSLEKLYIGGCSSLVEFPSFIENAVSLRKLDLTSYP |
| HMMPfam: PF07725 IPR011713
|
663-682 | LRR_3 Leucine-rich repeat 3
|
FLVELIMHTSKLEKLWEGTK |
| Gene3D: G3DSA:3.80.10.10 | 769-928 | G3DSA:3.80.10.10 | LPSYVGNATNLDELYLSNCLDLVELPLSLGNLQKLKKLVLKGCSKLEVFPTNFNVESLEILCLAGCSSLDLGGCSTIGNVPSLRMLNLRSLPQLLDLPSFIGNAINLYYLDLSGCSNLVELPVFIGNLQKLYMLGLEGCSKLEFLPTNINLESLSWLNLR |
| FPrintScan: PR00364 IPR000767
|
798-814 | DISEASERSIST Disease resistance protein
|
GNLQKLKKLVLKGCSKL |
| superfamily: SSF52058 | 849-1064 | SSF52058,LRR | PSLRMLNLRSLPQLLDLPSFIGNAINLYYLDLSGCSNLVELPVFIGNLQKLYMLGLEGCSKLEFLPTNINLESLSWLNLRDCSMLKCFPQISTNIRDLDLTGTAIEQVPPSIRSWPRLEDLTMSYFENLKEFPHALERITELCLTDTDIQELPPWVKQISCLNSFVLKGCRKLVSIPPISDSIRFLDASDCESLEILECSFHNQISRLNFANCFKL |
| HMMPfam: PF00560 IPR001611
|
874-895 | LRR_1 Leucine-rich repeat
|
NLYYLDLSGCSNLVELPVFIGN |
| Gene3D: G3DSA:3.80.10.10 | 929-1071 | G3DSA:3.80.10.10 | DCSMLKCFPQISTNIRDLDLTGTAIEQVPPSIRSWPRLEDLTMSYFENLKEFPHALERITELCLTDTDIQELPPWVKQISCLNSFVLKGCRKLVSIPPISDSIRFLDASDCESLEILECSFHNQISRLNFANCFKLNQEARDL |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
