PRGDB00061544 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438172 (FJ842795) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGAACAGAATCATGAAAAAGCTATCGTGCTTTAAGACAAAAGTTAAATCATTGCGACTACTCGAATCCAGGTCATCACTGTCTTCTTCCTCTTTCACTCCTCAGAAATACGACGTCTTTCTAAGCTTCAGGGGCCCAGATACTCGCAAGAACTTCGTCAGTTTTCTCTACAAGGAGTTAGTGGCGAAAGAGATCCGAACTTTCAAAGACGACAAGGAGTTGGAGAGAGGCCGTCTGATCTCACCGGAGCTTCTACAAGCCATCGAAGGGTCAGAAATCGCCGTCGTGGTTGTCTCTAAGACTTACTCAGCTTCCAACTGGTGTCTTGAAGAGCTTGTCAAGATCTTGAAACTCGAGAAGAAGGGTTTGATCAAAGTGCTGCCTATTTTCTACGAGGTTGATCCTTCTCACGTGAGGTGGCAGAGAGAAGAAGTCGCGAAACAGTTCAAGAAACACGAGAAGAGACAGAGCAGAGAGAAGGTCAAATCTTGGAGGGATGCGTTGAATTATTTGGCTGAGCTCTCTGGTGAATGTTCAAAGAACTGGGAAGATGACTCGAAGCTGGTCGATGGAATCACAGAAAGAGTATCAAAGATGTTGTTCTCCGTAAAACCAAGAAATGGTAATAACCTAATTGGTATCGATGAACACATGAATGAATTGTATCCACGGTTAGATTTAAGCTCAAAGGAAGGTGTGCGAGTCATTGGGATATGGGGAAGAGGAAGCATGGGAAGATCAGCACTTGCAAGACACGTTTACGAGAGCATCTCTCATAACTTTGAAGCTCACTGTTTCCTCGAAGACGTGAGAAAGATCTCACAACATTGCCGCAAATCTCATCTACAAGAAGAGCTTCTTTCCAAGATGCAAGGGGAAGGGTTGAGCACAAAGAGCTCTCATAGGTGTCTTAAAGCGATCAAAGCAAGGCTCAGGAACAAGAAGGTTCTGCTTGTGGCTAACGACGTGGACAAGATCGAACAGTTAGAATCCCTTGGTGAGGAGTTTAGCTGGTTTGGTCATGGGAGCAGAGTCGTCATAGCCACACAAGATAGGCAATTGCTTAGTTCATGGGGTGTGAAGAGTGTCTATGAAGTTGAGCTCTTGAAATGCTACGAAGTTCGAAAGCTCTTTAGGTCAGAAGCATTCAAGCAGAGAGAGGTGGATCCTATTGGTTTGGAGCAGTGTACATATCATCCACACATGAATTTTCTTGGTATTAATTTCATTTTGAAATGTTTGGTGGCTTTGTTTTTAATTGTTGTTCATACTATTGTTTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MNRIMKKLSCFKTKVKSLRLLESRSSLSSSSFTPQKYDVFLSFRGPDTRKNFVSFLYKELVAKEIRTFKDDKELERGRLISPELLQAIEGSEIAVVVVSKTYSASNWCLEELVKILKLEKKGLIKVLPIFYEVDPSHVRWQREEVAKQFKKHEKRQSREKVKSWRDALNYLAELSGECSKNWEDDSKLVDGITERVSKMLFSVKPRNGNNLIGIDEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSKMQGEGLSTKSSHRCLKAIKARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVIATQDRQLLSSWGVKSVYEVELLKCYEVRKLFRSEAFKQREVDPIGLEQCTYHPHMNFLGINFILKCLVALFLIVVHTIV |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
25-177 | TIR Toll-Interleukin receptor
|
SSLSSSSFTPQKYDVFLSFRGPDTRKNFVSFLYKELVAKEIRTFKDDKELERGRLISPELLQAIEGSEIAVVVVSKTYSASNWCLEELVKILKLEKKGLIKVLPIFYEVDPSHVRWQREEVAKQFKKHEKRQSREKVKSWRDALNYLAELSGE |
| Gene3D: G3DSA:3.40.50.10140 | 35-172 | G3DSA:3.40.50.10140 | QKYDVFLSFRGPDTRKNFVSFLYKELVAKEIRTFKDDKELERGRLISPELLQAIEGSEIAVVVVSKTYSASNWCLEELVKILKLEKKGLIKVLPIFYEVDPSHVRWQREEVAKQFKKHEKRQSREKVKSWRDALNYLA |
| ProfileScan: PS50104 IPR000157
|
35-174 | TIR Toll-Interleukin receptor
|
QKYDVFLSFRGPDTRKNFVSFLYKELVAKEIRTFKDDKELERGRLISPELLQAIEGSEIAVVVVSKTYSASNWCLEELVKILKLEKKGLIKVLPIFYEVDPSHVRWQREEVAKQFKKHEKRQSREKVKSWRDALNYLAEL |
| HMMSmart: SM00255 IPR000157
|
36-174 | TIR Toll-Interleukin receptor
|
KYDVFLSFRGPDTRKNFVSFLYKELVAKEIRTFKDDKELERGRLISPELLQAIEGSEIAVVVVSKTYSASNWCLEELVKILKLEKKGLIKVLPIFYEVDPSHVRWQREEVAKQFKKHEKRQSREKVKSWRDALNYLAEL |
| HMMPfam: PF01582 IPR000157
|
39-169 | TIR Toll-Interleukin receptor
|
VFLSFRGPDTRKNFVSFLYKELVAKEIRTFKDDKELERGRLISPELLQAIEGSEIAVVVVSKTYSASNWCLEELVKILKLEKKGLIKVLPIFYEVDPSHVRWQREEVAKQFKKHEKRQSREKVKSWRDALN |
| HMMPanther: PTHR23155 | 48-347 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | TRKNFVSFLYKELVAKEIRTFKDDKELERGRLISPELLQAIEGSEIAVVVVSKTYSASNWCLEELVKILKLEKKGLIKVLPIFYEVDPSHVRWQREEVAKQFKKHEKRQSREKVKSWRDALNYLAELSGECSKNWEDDSKLVDGITERVSKMLFSVKPRNGNNLIGIDEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSKMQGEGLSTKSSHRCLKAIKARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVI |
| HMMPanther: PTHR23155:SF344 | 48-347 | PTHR23155:SF344 | TRKNFVSFLYKELVAKEIRTFKDDKELERGRLISPELLQAIEGSEIAVVVVSKTYSASNWCLEELVKILKLEKKGLIKVLPIFYEVDPSHVRWQREEVAKQFKKHEKRQSREKVKSWRDALNYLAELSGECSKNWEDDSKLVDGITERVSKMLFSVKPRNGNNLIGIDEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSKMQGEGLSTKSSHRCLKAIKARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVI |
| superfamily: SSF52540 | 193-384 | SSF52540 | TERVSKMLFSVKPRNGNNLIGIDEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSKMQGEGLSTKSSHRCLKAIKARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVIATQDRQLLSSWGVKSVYEVELLKCYEVRKLFRSEAFK |
| Gene3D: G3DSA:3.40.50.300 | 209-352 | G3DSA:3.40.50.300 | NNLIGIDEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSKMQGEGLSTKSSHRCLKAIKARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVIATQDR |
| HMMPfam: PF00931 IPR002182
|
215-388 | NB-ARC,NBS NB-ARC
|
DEHMNELYPRLDLSSKEGVRVIGIWGRGSMGRSALARHVYESISHNFEAHCFLEDVRKISQHCRKSHLQEELLSKMQGEGLSTKSSHRCLKAIKARLRNKKVLLVANDVDKIEQLESLGEEFSWFGHGSRVVIATQDRQLLSSWGVKSVYEVELLKCYEVRKLFRSEAFKQREV |
| FPrintScan: PR00364 IPR000767
|
235-250 | DISEASERSIST Disease resistance protein
|
VIGIWGRGSMGRSALA |
| FPrintScan: PR00364 IPR000767
|
310-324 | DISEASERSIST Disease resistance protein
|
RLRNKKVLLVANDVD |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
