PRGDB00061549 (disease resistance protein)

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disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 227438162 (FJ842790)
Gene Class TNL
Domain Type NBS, TIR, LRR, Others
Gene Species Brassica rapa subsp. pekinensis

Comment?

Brassica rapa subsp. pekinensis isolate BrTNL42 disease resistance protein gene, complete cds.

DNA Sequence

ATGGATTCTTCTTTTTTGCTCACCACTCTTGCTGCTGCAATAGGGCTCTTAACAGTTCTGAGAAAACTTAGATTCCATCAAGAAGATAACAGAGAAAAGGATCCTTCTTCTTCATCAACTTCATCTTCTTTGTCTCCTTCAACGGTTCATTTACCTTCTTCTTCTCACATCTGGACGCATGATGTCTTTCCTAGCTTCCGTGGGGAAGATGTACGCAGAGACTTCTTCAGTCACATTCAGAGGGAGTTTGAAAGAAAAGGAATCACTCCGTTCATAGATAATGAAATCAAAAGAGGAGAATCTATCGGTCCAGAGCTGATCAGGGCCATCAGAGGATCAAAGATTGCAATTATCTTGCTCTCTAGAAACTATGCCTCCTCAAAATGGTGTCTTGATGAACTGGTGGAGATTATGAAGTGCAGAGAAGAGTTTGGTCAGACTGTAATGGCTATTTTCCACAAAGTGGATCCTTCTGATGTGAAAAAGCTAACCGGAGATTTTGGGAAATTTTTTAAGAAAACTTGTGCTGGTAAAGCAAAGGATTGCATTGAGAGATGGAGACAAGCTTTAGCCAAAGTGGCTACCATCGCTGGCTATCATTCAAGCAACTGGGATAATGAAGCCGACATGATCAAGAAAATCGCCACTGATACTTCGAACATGCTGAATAATTTCACACCATCAAATGATTTCGATGGTTTAGTTGGGATGGGAGCTCATTGGGAAAATTTGAAATCAATCTTATGCCTAGGCTCAGATGAGGTGAGGATGATTGGGATTTGGGGTCCTCCTGGGATTGGGAAGACCACAATCGCTAGAGTCGCATTCAACCAACTCTCCAACAGTTTTCAACTGAGTGTCTTTATGGATGATCTCAAAGCAAACTCTTCAAGACTGTGTTCCGATGACTACAGCGTAAAGTTGCAATTACAGCAACAGTTTATGTCTCAAATAACCGATCATAAGGATATGGTTGTATCTCATTTCGGTGTTGTGTCAAATAGGTTGAGGGACAAGAAAGTTCTTGTTGTTCTTGATGGCGTGAACCGGTCAGTACAACTAGATGCGATGGCGAAAGAGACTTGGTGGTTTGGTCCCGGTAGTCGGATTATAATCACAACACAAGATCAGAAACTTTTTAGAGCACATGGGATCAACCATATTTACGAAGTGAATCTTCCAACAAATGATGAGGCTCTCCAAATATTTTGTACGTATTGTTTTGGTCAAAATTTCCCTAAATATGGTTTTGAGGAGCTTGCTCGAGAAGTTACAAGTCTTTCTGGTGAACTCCCATTGGGGCTAAGGGTTATGGGTTCCTACCTTCGGGGAATGTCCAAGGAAGACTGGACAAATTCACTACCAAGATTAAGAGATAGCCTTGACACTGATATTCAAAGCATTTTGAAATTCAGTTATGATGCCTTAGACGATGAAGATAAAGATTTGTTTCTTCATATAGCCTGCTTCTTTAGCTCTGAGCAGATTCACAAAATGGAAGAGCATCTTGCAAAGAGGTTCTTGTATGTGAGGCAAAGACTTAAAGTCTTAGCTGAGAAATCTCTCATATCTATTGACTCAGGACGTATAAGGATGCATAGTTTGCTAGAAAAACTAGGTAGAGAAATTGTTTGTAAACAATCTATTCATGAGCCTGGACAGCGTCAGTTTCTGTACGACAAAAGAGATATTTGTGAAGTACTGACTGGTGGTGCAACAGGTAGTAAAAGTGTCATAGGCATAAAGTTCGAATACTATAGAATCAGGGAAGAAATAGATATAAGTGAGAAAGCATTTGAAGGAATGTCAAATCTCCAATTCTTAAAAGTTTGTGGTTTTACCGATGCACTGCAAATAACTGGAGTTTCCCAAATCTGTNGGAGCTCCCNTTCTTATGTTGGGAATGCCACCAACTTGGAGTACTTGGATCTTCGTAATTGCTTAAATATGGTGGAACTTCCTCTCTCTCTTAGAAACCTTAAGAAGTTGAAAAGGCTGAGATTAAAAGGATGCAGTAAGCTAGAGGTTCTTCCCACCAACATCAACTTGGAATATTTGAATGAACTTGATATCGCTGGATGCTCAAGTCTTGATCTCGGGGATTTCTCCACTATCGGAAATGCCGTCAACCTCCGAGAATTGAATATCAGTAGTCTACCACAATTGTTGGAGGTCCCTTCCTTTATTGGGAATGCCACTAATCTAGAGAACTTGGTCCTTAGTAGTTGCTCAAAACTGGTGGAACTTCCTCTTTTCATTGGGAACCTTCAGAAGTTGCGGTGGCTGAGATTAGAAGGATGCATTAGGCTAGAGGTCCTTCCCACCAACATCAACTTGGAATCTTTGCTTGAACTTAATCTCAGTGATTGCTCCATGTTGAAAAGTTTTCCCCAGATCTCCACAAACCTTGAAAAGCTCAACCTCAGAGGAACTGCAATAGAACAAGTGCCTCCCTCGATCAGGTCATGGCCTCATCTTAAAGAGTTGCACATGTCATACTTTGAAAACCTCAAGGAATTCCCTCATGCTCTCGAAAGAATTACAAGCCTTTCCTTGACCGACACAGAGATACAAGAGGTTCCTCCATTGGTCAAGCAAATCTCTCGTCTGAATAGATTCTTCCTCAGTGGATGCCGAAAGTTGGTAAGACTCCCGCCGATTTCGGAGTCCACTCATTCTATATATGCAAATGACTGTGACTCCCTGGAGATACTAGAGTGTTCCTTTTCCGATCAAATCCGTAGGCTCACCTTCGCCAACTGCTTCAAACTGAATCAAGAGGCGAGAGACCTCATCATCCAGGCTAGTAGTGAACATGCAGTCTTACCAGGTGGACAAGTGCCTCCATACTTCACTCACCGAGCTACTGGTGGAGGTCCATTGACTATCAAATTGAATCAAAATCCTCTTCCAGAATCCATGACATTTAAAGCTTGCATCTTGCTGCTTAATAAAGGTGACCATGAAGCTTGCTCTAAAGAGAAATCAAGGAGAGTGGATGTTGTAAATAATAATATCATATTTGGATTATATCCGGCTTTAGCGGAGCATCTGTACACATTCCGTATCAACTTAGAAGTCACTTCCAGGAAGCTTCTCTTTGAGTTCAAGTTGATGAGCGATGATGACGATTGGAAGATAGGAGAATGCGGGATAGTCCAACAATAG


Protein sequences

Name Description Sequence
disease resistance protein disease resistance protein [Brassica rapa subsp. pekinensis].

MDSSFLLTTLAAAIGLLTVLRKLRFHQEDNREKDPSSSSTSSSLSPSTVHLPSSSHIWTHDVFPSFRGEDVRRDFFSHIQREFERKGITPFIDNEIKRGESIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREEFGQTVMAIFHKVDPSDVKKLTGDFGKFFKKTCAGKAKDCIERWRQALAKVATIAGYHSSNWDNEADMIKKIATDTSNMLNNFTPSNDFDGLVGMGAHWENLKSILCLGSDEVRMIGIWGPPGIGKTTIARVAFNQLSNSFQLSVFMDDLKANSSRLCSDDYSVKLQLQQQFMSQITDHKDMVVSHFGVVSNRLRDKKVLVVLDGVNRSVQLDAMAKETWWFGPGSRIIITTQDQKLFRAHGINHIYEVNLPTNDEALQIFCTYCFGQNFPKYGFEELAREVTSLSGELPLGLRVMGSYLRGMSKEDWTNSLPRLRDSLDTDIQSILKFSYDALDDEDKDLFLHIACFFSSEQIHKMEEHLAKRFLYVRQRLKVLAEKSLISIDSGRIRMHSLLEKLGREIVCKQSIHEPGQRQFLYDKRDICEVLTGGATGSKSVIGIKFEYYRIREEIDISEKAFEGMSNLQFLKVCGFTDALQITGVSQICXSSXSYVGNATNLEYLDLRNCLNMVELPLSLRNLKKLKRLRLKGCSKLEVLPTNINLEYLNELDIAGCSSLDLGDFSTIGNAVNLRELNISSLPQLLEVPSFIGNATNLENLVLSSCSKLVELPLFIGNLQKLRWLRLEGCIRLEVLPTNINLESLLELNLSDCSMLKSFPQISTNLEKLNLRGTAIEQVPPSIRSWPHLKELHMSYFENLKEFPHALERITSLSLTDTEIQEVPPLVKQISRLNRFFLSGCRKLVRLPPISESTHSIYANDCDSLEILECSFSDQIRRLTFANCFKLNQEARDLIIQASSEHAVLPGGQVPPYFTHRATGGGPLTIKLNQNPLPESMTFKACILLLNKGDHEACSKEKSRRVDVVNNNIIFGLYPALAEHLYTFRINLEVTSRKLLFEFKLMSDDDDWKIGECGIVQQ

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
48-199 TIR
Toll-Interleukin receptor

TVHLPSSSHIWTHDVFPSFRGEDVRRDFFSHIQREFERKGITPFIDNEIKRGESIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREEFGQTVMAIFHKVDPSDVKKLTGDFGKFFKKTCAGKAKDCIERWRQALAKVATIAGY

ProfileScan: PS50104
IPR000157
58-196 TIR
Toll-Interleukin receptor

WTHDVFPSFRGEDVRRDFFSHIQREFERKGITPFIDNEIKRGESIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREEFGQTVMAIFHKVDPSDVKKLTGDFGKFFKKTCAGKAKDCIERWRQALAKVATI

Gene3D: G3DSA:3.40.50.10140
58-194 G3DSA:3.40.50.10140

WTHDVFPSFRGEDVRRDFFSHIQREFERKGITPFIDNEIKRGESIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREEFGQTVMAIFHKVDPSDVKKLTGDFGKFFKKTCAGKAKDCIERWRQALAKVA

HMMSmart: SM00255
IPR000157
59-196 TIR
Toll-Interleukin receptor

THDVFPSFRGEDVRRDFFSHIQREFERKGITPFIDNEIKRGESIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREEFGQTVMAIFHKVDPSDVKKLTGDFGKFFKKTCAGKAKDCIERWRQALAKVATI

HMMPfam: PF01582
IPR000157
62-191 TIR
Toll-Interleukin receptor

VFPSFRGEDVRRDFFSHIQREFERKGITPFIDNEIKRGESIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREEFGQTVMAIFHKVDPSDVKKLTGDFGKFFKKTCAGKAKDCIERWRQALA

HMMPanther: PTHR11017
83-957 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

FERKGITPFIDNEIKRGESIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREEFGQTVMAIFHKVDPSDVKKLTGDFGKFFKKTCAGKAKDCIERWRQALAKVATIAGYHSSNWDNEADMIKKIATDTSNMLNNFTPSNDFDGLVGMGAHWENLKSILCLGSDEVRMIGIWGPPGIGKTTIARVAFNQLSNSFQLSVFMDDLKANSSRLCSDDYSVKLQLQQQFMSQITDHKDMVVSHFGVVSNRLRDKKVLVVLDGVNRSVQLDAMAKETWWFGPGSRIIITTQDQKLFRAHGINHIYEVNLPTNDEALQIFCTYCFGQNFPKYGFEELAREVTSLSGELPLGLRVMGSYLRGMSKEDWTNSLPRLRDSLDTDIQSILKFSYDALDDEDKDLFLHIACFFSSEQIHKMEEHLAKRFLYVRQRLKVLAEKSLISIDSGRIRMHSLLEKLGREIVCKQSIHEPGQRQFLYDKRDICEVLTGGATGSKSVIGIKFEYYRIREEIDISEKAFEGMSNLQFLKVCGFTDALQITGVSQICXSSXSYVGNATNLEYLDLRNCLNMVELPLSLRNLKKLKRLRLKGCSKLEVLPTNINLEYLNELDIAGCSSLDLGDFSTIGNAVNLRELNISSLPQLLEVPSFIGNATNLENLVLSSCSKLVELPLFIGNLQKLRWLRLEGCIRLEVLPTNINLESLLELNLSDCSMLKSFPQISTNLEKLNLRGTAIEQVPPSIRSWPHLKELHMSYFENLKEFPHALERITSLSLTDTEIQEVPPLVKQISRLNRFFLSGCRKLVRLPPISESTHSIYANDCDSLEILECSFSDQIRRLTFANCFKLNQEARDLIIQASSEHAVLPGGQVPPYFTHRATG

HMMPanther: PTHR11017:SF20
83-957 PTHR11017:SF20,SUBFAMILY NOT NAMED

FERKGITPFIDNEIKRGESIGPELIRAIRGSKIAIILLSRNYASSKWCLDELVEIMKCREEFGQTVMAIFHKVDPSDVKKLTGDFGKFFKKTCAGKAKDCIERWRQALAKVATIAGYHSSNWDNEADMIKKIATDTSNMLNNFTPSNDFDGLVGMGAHWENLKSILCLGSDEVRMIGIWGPPGIGKTTIARVAFNQLSNSFQLSVFMDDLKANSSRLCSDDYSVKLQLQQQFMSQITDHKDMVVSHFGVVSNRLRDKKVLVVLDGVNRSVQLDAMAKETWWFGPGSRIIITTQDQKLFRAHGINHIYEVNLPTNDEALQIFCTYCFGQNFPKYGFEELAREVTSLSGELPLGLRVMGSYLRGMSKEDWTNSLPRLRDSLDTDIQSILKFSYDALDDEDKDLFLHIACFFSSEQIHKMEEHLAKRFLYVRQRLKVLAEKSLISIDSGRIRMHSLLEKLGREIVCKQSIHEPGQRQFLYDKRDICEVLTGGATGSKSVIGIKFEYYRIREEIDISEKAFEGMSNLQFLKVCGFTDALQITGVSQICXSSXSYVGNATNLEYLDLRNCLNMVELPLSLRNLKKLKRLRLKGCSKLEVLPTNINLEYLNELDIAGCSSLDLGDFSTIGNAVNLRELNISSLPQLLEVPSFIGNATNLENLVLSSCSKLVELPLFIGNLQKLRWLRLEGCIRLEVLPTNINLESLLELNLSDCSMLKSFPQISTNLEKLNLRGTAIEQVPPSIRSWPHLKELHMSYFENLKEFPHALERITSLSLTDTEIQEVPPLVKQISRLNRFFLSGCRKLVRLPPISESTHSIYANDCDSLEILECSFSDQIRRLTFANCFKLNQEARDLIIQASSEHAVLPGGQVPPYFTHRATG

superfamily: SSF52540
113-485 SSF52540

SKIAIILLSRNYASSKWCLDELVEIMKCREEFGQTVMAIFHKVDPSDVKKLTGDFGKFFKKTCAGKAKDCIERWRQALAKVATIAGYHSSNWDNEADMIKKIATDTSNMLNNFTPSNDFDGLVGMGAHWENLKSILCLGSDEVRMIGIWGPPGIGKTTIARVAFNQLSNSFQLSVFMDDLKANSSRLCSDDYSVKLQLQQQFMSQITDHKDMVVSHFGVVSNRLRDKKVLVVLDGVNRSVQLDAMAKETWWFGPGSRIIITTQDQKLFRAHGINHIYEVNLPTNDEALQIFCTYCFGQNFPKYGFEELAREVTSLSGELPLGLRVMGSYLRGMSKEDWTNSLPRLRDSLDTDIQSILKFSYDALDDEDKDLFL

Gene3D: G3DSA:3.40.50.300
224-268 G3DSA:3.40.50.300

NFTPSNDFDGLVGMGAHWENLKSILCLGSDEVRMIGIWGPPGIGK

HMMPfam: PF00931
IPR002182
240-499 NB-ARC,NBS
NB-ARC

HWENLKSILCLGSDEVRMIGIWGPPGIGKTTIARVAFNQLSNSFQLSVFMDDLKANSSRLCSDDYSVKLQLQQQFMSQITDHKDMVVSHFGVVSNRLRDKKVLVVLDGVNRSVQLDAMAKETWWFGPGSRIIITTQDQKLFRAHGINHIYEVNLPTNDEALQIFCTYCFGQNFPKYGFEELAREVTSLSGELPLGLRVMGSYLRGMSKEDWTNSLPRLRDSLDTDIQSILKFSYDALDDEDKDLFLHIACFFSSEQIHKM

HMMSmart: SM00382
IPR003593
254-394 AAA,NBS
ATPase, AAA+ type, core

EVRMIGIWGPPGIGKTTIARVAFNQLSNSFQLSVFMDDLKANSSRLCSDDYSVKLQLQQQFMSQITDHKDMVVSHFGVVSNRLRDKKVLVVLDGVNRSVQLDAMAKETWWFGPGSRIIITTQDQKLFRAHGINHIYEVNLP

FPrintScan: PR00364
IPR000767
257-272 DISEASERSIST
Disease resistance protein

MIGIWGPPGIGKTTIA

Gene3D: G3DSA:3.40.50.300
269-297 G3DSA:3.40.50.300

TTIARVAFNQLSNSFQLSVFMDDLKANSS

Gene3D: G3DSA:3.40.50.300
330-407 G3DSA:3.40.50.300

GVVSNRLRDKKVLVVLDGVNRSVQLDAMAKETWWFGPGSRIIITTQDQKLFRAHGINHIYEVNLPTNDEALQIFCTYC

FPrintScan: PR00364
IPR000767
335-349 DISEASERSIST
Disease resistance protein

RLRDKKVLVVLDGVN

FPrintScan: PR00364
IPR000767
428-442 DISEASERSIST
Disease resistance protein

SGELPLGLRVMGSYL

superfamily: SSF46785
463-569 SSF46785

TDIQSILKFSYDALDDEDKDLFLHIACFFSSEQIHKMEEHLAKRFLYVRQRLKVLAEKSLISIDSGRIRMHSLLEKLGREIVCKQSIHEPGQRQFLYDKRDICEVLT

superfamily: SSF52047
591-879 SSF52047,LRR

EIDISEKAFEGMSNLQFLKVCGFTDALQITGVSQICXSSXSYVGNATNLEYLDLRNCLNMVELPLSLRNLKKLKRLRLKGCSKLEVLPTNINLEYLNELDIAGCSSLDLGDFSTIGNAVNLRELNISSLPQLLEVPSFIGNATNLENLVLSSCSKLVELPLFIGNLQKLRWLRLEGCIRLEVLPTNINLESLLELNLSDCSMLKSFPQISTNLEKLNLRGTAIEQVPPSIRSWPHLKELHMSYFENLKEFPHALERITSLSLTDTEIQEVPPLVKQISRLNRFFLSGCR

Gene3D: G3DSA:3.80.10.10
603-784 G3DSA:3.80.10.10

SNLQFLKVCGFTDALQITGVSQICXSSXSYVGNATNLEYLDLRNCLNMVELPLSLRNLKKLKRLRLKGCSKLEVLPTNINLEYLNELDIAGCSSLDLGDFSTIGNAVNLRELNISSLPQLLEVPSFIGNATNLENLVLSSCSKLVELPLFIGNLQKLRWLRLEGCIRLEVLPTNINLESLLE

HMMPfam: PF00560
IPR001611
638-660 LRR_1
Leucine-rich repeat

NLEYLDLRNCLNMVELPLSLRNL

FPrintScan: PR00364
IPR000767
658-674 DISEASERSIST
Disease resistance protein

RNLKKLKRLRLKGCSKL

Gene3D: G3DSA:3.80.10.10
785-921 G3DSA:3.80.10.10

LNLSDCSMLKSFPQISTNLEKLNLRGTAIEQVPPSIRSWPHLKELHMSYFENLKEFPHALERITSLSLTDTEIQEVPPLVKQISRLNRFFLSGCRKLVRLPPISESTHSIYANDCDSLEILECSFSDQIRRLTFANC

HMMPfam: PF12799
801-832 LRR_4,Leucine Rich repeats (2 copies)

TNLEKLNLRGTAIEQVPPSIRSWPHLKELHMS


List of References

Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736 WorldCat.org DOI (I p)





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