PRGDB00061552 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438156 (FJ842787) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGAGTCTTCGTCTCCTTCTCGAAATTGGAGATTCAACGTCTTCCCGAGCTTCTGCGGTGAAGATCTCCGCAAAAACTTCCTCAGCCATTTCCTGAAGGAGTTGCAAAGGAAAGGAATCACAACTTTCATCGATCATGAGATCAAGAGGAGCAAAGCTATCGGCCCTGAGCTCGTGGCAGCGATCAGAGGATCAAGGATGGCAGTCATCTTGCTCTCGAAGAACTATGCATCTTCGACGTGGTGTTTGAACGAACTGCTCGAAATCATGAGCTGTAAAGAAGAGATCGGCCAAACAGTGATGCCGGTTTTCTACGAAGTCGATCCATCTGACGTCAGAAAGCAGGCCGGGGATTTTGGAAACATCTTTGAAGAAACTTGTTTGGGGAAGTCGGAAGAAGTGAGGCAGAGATGGTCACGGGCTCTGACGGACCTCGCGAATCTAGCCGGAGTGGATTCTCGCCTCTGGAACAATGAAGCTGATATGATTGAGAAACTTGCGTTGGATATCTCTAGTGCATTAAACGTTACACCTTCAAGGGACTTTGATGATCTCGTTGGAATAGAAGCTCATATCAAAAATCTGAAGCCATTGTTATCTCTAGAGTCTAGTGAAGTGAGGATTGTAGGTGTTTGGGGTCCTGCGGGAATTGGGAAGACAACCATTGCAAGAGCTCTATACACTCGACTGTCTCCTATTTTCCAGCATAGTGCATTCATGGGGAACATTAAGGAAACATATAGGAGAATCAGCCTCGATGATTACGGTTCGAAGTTGCATCTGCAAGAAGAGTTTTTGTCTAAGCTTATCAACCATAAAGATGTGAAGATACCTCACTCAGGTGTGGTAAGAGAAAGGTTGAAGGACAAGAGAGTCTTTGTTGTTCTTGATGATGTTGATGAACTGGAGCAACTCATTGCCTTGGCAAAGGAGCCTCGATGGTTTGGTTCTGGAAGTAGGATTGTAGTGACCACACAAGATAGACAGCTTCTGAAAGCACATGGTATCGACCTTGTATACAAGGTGGAACTTCCGTCTAGACTCGAAGCTCTTGAGATCTTCTGTCAATCTGCTTTTGGACAAAAGCATCCTCCTTGTGTCGGTATCAGGGAGCTCGCGCTACAAGTGACTCATCTTGCTGGATATCTTCCTTTGGGTTTAACCGTTTTGGGCTCCTACTTGCGAGGGTTTTCTAAAGAAGAGTGGGAATATGCAATACCAAGACTTAACACAAGTCTTGATGGTAAAATTGANAAGACTTTGAGATTCAGCTATGATGCCTTGCATAGTAAAGATAAATCCATATTTCTTCACATTGCTTGTTTGTTCAATGGTAAGAACGTCNAGGATGTGAAGATGTTGCTTGAGAATAGTAACTTGGACGTTGACCACGGACTTAAAGCCTTGGCTGATAAATCTCTTATAGATACTCATTGGGGACGCATACATATGCACTCTCTGTTACAAAAAATGGGTAGAGAGATCGTCTGTCAACAGTCTGTTCACGAGCCTGGAAAACGTCAGTTCTTGGTTGATGCTGAGGAGATTAGGGATGTACTTGCCTGCAAATCCGGTACAGCAACTGTCTTAGGCATATCATTCGATGCATCGAAAATCAATGGAGAGTTATCCATAAGTAAGAAAGCCTTTAAAGGAATGCATAATCTCCAGTTCTTGGAGATATATAAGAAATGGAATGGTAGATCCAGACTAAATCTGCCACAGGGTCTAAACTATTTACCCCACAAACTTAGACTGCTACACTGGGACTCGTTTCCTATGAGATCTTTGCCTTCCAAGTTCTCTGCAGAGTTCCTTGTGGAACTCAGAATGAGATTTAGCAAGCTTGAGAAACTCTGGGAAGGGATCATACCACTTAGGAGTCTCAAAGTGATGGATGTGAGTTACTCCAGAAAGCTCAAAGAGATTCCTAATCTCTCAAATGCCACAAACCTTAAGAAATTTTCAGCAGATGGTTGTGAAAGCCTCAGTGCATTCCCACATGTCCCTAACTGCATCGAGGAGCTTGAACTAAGCTACACAGGAATAATAGAAGTTCCTCCATGGATCAAGAATCTCTGTGGGCTGCAGAGAGTCTGTATGACGCAATGCTCGAAACTAACCAATATCTCTATGAACGTTTCAAAGCTCGAGAACCTTGAAGAAGTGGATTTCTCAGGCAGTGTGGATGGTATACTGTTTACTGCAATAGTTAGTTGGCTCTCTGGTGTCAAGAAAAGGCTGACGATAAAGGCTAATAATATTGAAGAAATGTTACCAAAATGTCTACCGAGAAAGGCATATACTTCTCCAGTTTTACTGGATTTGAGTGGTAACGAAGATATCAAAACTATTCCAGACTGCATCAAACATTTTTCTCAACTTCATAAGCTTGACGTTGGAAAATGCAGAAAGCTTACATCACTTCCACAGCTTCCAGAATCACTTTCAGAGCTAAATGCACAAGAGTGTGAGTCTCTTGAGAGAATACATGGTTCGTTTCACAATCCAGACATCTGTCTCAATTTTGCAAACTGCTTGAAACTCAACAGAGAAGCAAGAGAGCTCATATGTGCATCACCTAGCAGATACACCATCTTACCTGGTGAAGAACAGCCTGGAATGTTTAAAGACCAAACTTCAGGAGATCTGTTAAAGGTTGTGCATATGATTCAGAGACCCTTTCCTCGATTCCTGAGATATAAGGCTTGCATTAGGCTTCTTGCTCGGTCAGCTGTCTATGACGATGACTCTGGTGGTATTGCTCGTGTAGCTTGTTGCATAAGGCGCATATGCGATGGCAGTGTTGTGAGAGATGAATCTCTAGAGTTACACATTCCTGTACTCGTGAACGATCATCTCTTTACATTGGGAGGTTCTTTGATCCTAAACAAAGGCAATGAACCTGAAGTAGATGCAACGTTCAGCGAGTTTTTGTTCGAGTTCAAGGCCAACATAAAGATGGAGATTATAGGATGTCAATTTACAGTTCTTGGGGGCAAAAGGGACTATGATACATATTCTAGATGGAATGAAGAAGTTTCTAGCCAGCAAGATAAAAGGATAAGGCATGAAACTGAGGAACAAAGATAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MESSSPSRNWRFNVFPSFCGEDLRKNFLSHFLKELQRKGITTFIDHEIKRSKAIGPELVAAIRGSRMAVILLSKNYASSTWCLNELLEIMSCKEEIGQTVMPVFYEVDPSDVRKQAGDFGNIFEETCLGKSEEVRQRWSRALTDLANLAGVDSRLWNNEADMIEKLALDISSALNVTPSRDFDDLVGIEAHIKNLKPLLSLESSEVRIVGVWGPAGIGKTTIARALYTRLSPIFQHSAFMGNIKETYRRISLDDYGSKLHLQEEFLSKLINHKDVKIPHSGVVRERLKDKRVFVVLDDVDELEQLIALAKEPRWFGSGSRIVVTTQDRQLLKAHGIDLVYKVELPSRLEALEIFCQSAFGQKHPPCVGIRELALQVTHLAGYLPLGLTVLGSYLRGFSKEEWEYAIPRLNTSLDGKIXKTLRFSYDALHSKDKSIFLHIACLFNGKNVXDVKMLLENSNLDVDHGLKALADKSLIDTHWGRIHMHSLLQKMGREIVCQQSVHEPGKRQFLVDAEEIRDVLACKSGTATVLGISFDASKINGELSISKKAFKGMHNLQFLEIYKKWNGRSRLNLPQGLNYLPHKLRLLHWDSFPMRSLPSKFSAEFLVELRMRFSKLEKLWEGIIPLRSLKVMDVSYSRKLKEIPNLSNATNLKKFSADGCESLSAFPHVPNCIEELELSYTGIIEVPPWIKNLCGLQRVCMTQCSKLTNISMNVSKLENLEEVDFSGSVDGILFTAIVSWLSGVKKRLTIKANNIEEMLPKCLPRKAYTSPVLLDLSGNEDIKTIPDCIKHFSQLHKLDVGKCRKLTSLPQLPESLSELNAQECESLERIHGSFHNPDICLNFANCLKLNREARELICASPSRYTILPGEEQPGMFKDQTSGDLLKVVHMIQRPFPRFLRYKACIRLLARSAVYDDDSGGIARVACCIRRICDGSVVRDESLELHIPVLVNDHLFTLGGSLILNKGNEPEVDATFSEFLFEFKANIKMEIIGCQFTVLGGKRDYDTYSRWNEEVSSQQDKRIRHETEEQR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
1-151 | TIR Toll-Interleukin receptor
|
MESSSPSRNWRFNVFPSFCGEDLRKNFLSHFLKELQRKGITTFIDHEIKRSKAIGPELVAAIRGSRMAVILLSKNYASSTWCLNELLEIMSCKEEIGQTVMPVFYEVDPSDVRKQAGDFGNIFEETCLGKSEEVRQRWSRALTDLANLAGV |
| Gene3D: G3DSA:3.40.50.10140 | 8-147 | G3DSA:3.40.50.10140 | RNWRFNVFPSFCGEDLRKNFLSHFLKELQRKGITTFIDHEIKRSKAIGPELVAAIRGSRMAVILLSKNYASSTWCLNELLEIMSCKEEIGQTVMPVFYEVDPSDVRKQAGDFGNIFEETCLGKSEEVRQRWSRALTDLAN |
| ProfileScan: PS50104 IPR000157
|
10-148 | TIR Toll-Interleukin receptor
|
WRFNVFPSFCGEDLRKNFLSHFLKELQRKGITTFIDHEIKRSKAIGPELVAAIRGSRMAVILLSKNYASSTWCLNELLEIMSCKEEIGQTVMPVFYEVDPSDVRKQAGDFGNIFEETCLGKSEEVRQRWSRALTDLANL |
| HMMSmart: SM00255 IPR000157
|
11-148 | TIR Toll-Interleukin receptor
|
RFNVFPSFCGEDLRKNFLSHFLKELQRKGITTFIDHEIKRSKAIGPELVAAIRGSRMAVILLSKNYASSTWCLNELLEIMSCKEEIGQTVMPVFYEVDPSDVRKQAGDFGNIFEETCLGKSEEVRQRWSRALTDLANL |
| HMMPfam: PF01582 IPR000157
|
14-143 | TIR Toll-Interleukin receptor
|
VFPSFCGEDLRKNFLSHFLKELQRKGITTFIDHEIKRSKAIGPELVAAIRGSRMAVILLSKNYASSTWCLNELLEIMSCKEEIGQTVMPVFYEVDPSDVRKQAGDFGNIFEETCLGKSEEVRQRWSRALT |
| HMMPanther: PTHR11017:SF20 | 34-883 | PTHR11017:SF20,SUBFAMILY NOT NAMED | ELQRKGITTFIDHEIKRSKAIGPELVAAIRGSRMAVILLSKNYASSTWCLNELLEIMSCKEEIGQTVMPVFYEVDPSDVRKQAGDFGNIFEETCLGKSEEVRQRWSRALTDLANLAGVDSRLWNNEADMIEKLALDISSALNVTPSRDFDDLVGIEAHIKNLKPLLSLESSEVRIVGVWGPAGIGKTTIARALYTRLSPIFQHSAFMGNIKETYRRISLDDYGSKLHLQEEFLSKLINHKDVKIPHSGVVRERLKDKRVFVVLDDVDELEQLIALAKEPRWFGSGSRIVVTTQDRQLLKAHGIDLVYKVELPSRLEALEIFCQSAFGQKHPPCVGIRELALQVTHLAGYLPLGLTVLGSYLRGFSKEEWEYAIPRLNTSLDGKIXKTLRFSYDALHSKDKSIFLHIACLFNGKNVXDVKMLLENSNLDVDHGLKALADKSLIDTHWGRIHMHSLLQKMGREIVCQQSVHEPGKRQFLVDAEEIRDVLACKSGTATVLGISFDASKINGELSISKKAFKGMHNLQFLEIYKKWNGRSRLNLPQGLNYLPHKLRLLHWDSFPMRSLPSKFSAEFLVELRMRFSKLEKLWEGIIPLRSLKVMDVSYSRKLKEIPNLSNATNLKKFSADGCESLSAFPHVPNCIEELELSYTGIIEVPPWIKNLCGLQRVCMTQCSKLTNISMNVSKLENLEEVDFSGSVDGILFTAIVSWLSGVKKRLTIKANNIEEMLPKCLPRKAYTSPVLLDLSGNEDIKTIPDCIKHFSQLHKLDVGKCRKLTSLPQLPESLSELNAQECESLERIHGSFHNPDICLNFANCLKLNREARELICASPSRYTILPGEEQPGMFKDQTSGD |
| HMMPanther: PTHR11017 | 34-883 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | ELQRKGITTFIDHEIKRSKAIGPELVAAIRGSRMAVILLSKNYASSTWCLNELLEIMSCKEEIGQTVMPVFYEVDPSDVRKQAGDFGNIFEETCLGKSEEVRQRWSRALTDLANLAGVDSRLWNNEADMIEKLALDISSALNVTPSRDFDDLVGIEAHIKNLKPLLSLESSEVRIVGVWGPAGIGKTTIARALYTRLSPIFQHSAFMGNIKETYRRISLDDYGSKLHLQEEFLSKLINHKDVKIPHSGVVRERLKDKRVFVVLDDVDELEQLIALAKEPRWFGSGSRIVVTTQDRQLLKAHGIDLVYKVELPSRLEALEIFCQSAFGQKHPPCVGIRELALQVTHLAGYLPLGLTVLGSYLRGFSKEEWEYAIPRLNTSLDGKIXKTLRFSYDALHSKDKSIFLHIACLFNGKNVXDVKMLLENSNLDVDHGLKALADKSLIDTHWGRIHMHSLLQKMGREIVCQQSVHEPGKRQFLVDAEEIRDVLACKSGTATVLGISFDASKINGELSISKKAFKGMHNLQFLEIYKKWNGRSRLNLPQGLNYLPHKLRLLHWDSFPMRSLPSKFSAEFLVELRMRFSKLEKLWEGIIPLRSLKVMDVSYSRKLKEIPNLSNATNLKKFSADGCESLSAFPHVPNCIEELELSYTGIIEVPPWIKNLCGLQRVCMTQCSKLTNISMNVSKLENLEEVDFSGSVDGILFTAIVSWLSGVKKRLTIKANNIEEMLPKCLPRKAYTSPVLLDLSGNEDIKTIPDCIKHFSQLHKLDVGKCRKLTSLPQLPESLSELNAQECESLERIHGSFHNPDICLNFANCLKLNREARELICASPSRYTILPGEEQPGMFKDQTSGD |
| superfamily: SSF52540 | 65-437 | SSF52540 | SRMAVILLSKNYASSTWCLNELLEIMSCKEEIGQTVMPVFYEVDPSDVRKQAGDFGNIFEETCLGKSEEVRQRWSRALTDLANLAGVDSRLWNNEADMIEKLALDISSALNVTPSRDFDDLVGIEAHIKNLKPLLSLESSEVRIVGVWGPAGIGKTTIARALYTRLSPIFQHSAFMGNIKETYRRISLDDYGSKLHLQEEFLSKLINHKDVKIPHSGVVRERLKDKRVFVVLDDVDELEQLIALAKEPRWFGSGSRIVVTTQDRQLLKAHGIDLVYKVELPSRLEALEIFCQSAFGQKHPPCVGIRELALQVTHLAGYLPLGLTVLGSYLRGFSKEEWEYAIPRLNTSLDGKIXKTLRFSYDALHSKDKSIFL |
| Gene3D: G3DSA:3.40.50.300 | 179-304 | G3DSA:3.40.50.300 | SRDFDDLVGIEAHIKNLKPLLSLESSEVRIVGVWGPAGIGKTTIARALYTRLSPIFQHSAFMGNIKETYRRISLDDYGSKLHLQEEFLSKLINHKDVKIPHSGVVRERLKDKRVFVVLDDVDELEQ |
| HMMPfam: PF00931 IPR002182
|
189-452 | NB-ARC,NBS NB-ARC
|
EAHIKNLKPLLSLESSEVRIVGVWGPAGIGKTTIARALYTRLSPIFQHSAFMGNIKETYRRISLDDYGSKLHLQEEFLSKLINHKDVKIPHSGVVRERLKDKRVFVVLDDVDELEQLIALAKEPRWFGSGSRIVVTTQDRQLLKAHGIDLVYKVELPSRLEALEIFCQSAFGQKHPPCVGIRELALQVTHLAGYLPLGLTVLGSYLRGFSKEEWEYAIPRLNTSLDGKIXKTLRFSYDALHSKDKSIFLHIACLFNGKNVXDVK |
| FPrintScan: PR00364 IPR000767
|
208-223 | DISEASERSIST Disease resistance protein
|
IVGVWGPAGIGKTTIA |
| FPrintScan: PR00364 IPR000767
|
286-300 | DISEASERSIST Disease resistance protein
|
RLKDKRVFVVLDDVD |
| Gene3D: G3DSA:3.40.50.300 | 321-354 | G3DSA:3.40.50.300 | IVVTTQDRQLLKAHGIDLVYKVELPSRLEALEIF |
| FPrintScan: PR00364 IPR000767
|
380-394 | DISEASERSIST Disease resistance protein
|
AGYLPLGLTVLGSYL |
| superfamily: SSF52058 | 495-889 | SSF52058,LRR | IVCQQSVHEPGKRQFLVDAEEIRDVLACKSGTATVLGISFDASKINGELSISKKAFKGMHNLQFLEIYKKWNGRSRLNLPQGLNYLPHKLRLLHWDSFPMRSLPSKFSAEFLVELRMRFSKLEKLWEGIIPLRSLKVMDVSYSRKLKEIPNLSNATNLKKFSADGCESLSAFPHVPNCIEELELSYTGIIEVPPWIKNLCGLQRVCMTQCSKLTNISMNVSKLENLEEVDFSGSVDGILFTAIVSWLSGVKKRLTIKANNIEEMLPKCLPRKAYTSPVLLDLSGNEDIKTIPDCIKHFSQLHKLDVGKCRKLTSLPQLPESLSELNAQECESLERIHGSFHNPDICLNFANCLKLNREARELICASPSRYTILPGEEQPGMFKDQTSGDLLKVVH |
| Gene3D: G3DSA:3.80.10.10 | 544-831 | G3DSA:3.80.10.10 | SISKKAFKGMHNLQFLEIYKKWNGRSRLNLPQGLNYLPHKLRLLHWDSFPMRSLPSKFSAEFLVELRMRFSKLEKLWEGIIPLRSLKVMDVSYSRKLKEIPNLSNATNLKKFSADGCESLSAFPHVPNCIEELELSYTGIIEVPPWIKNLCGLQRVCMTQCSKLTNISMNVSKLENLEEVDFSGSVDGILFTAIVSWLSGVKKRLTIKANNIEEMLPKCLPRKAYTSPVLLDLSGNEDIKTIPDCIKHFSQLHKLDVGKCRKLTSLPQLPESLSELNAQECESLERIH |
| HMMPfam: PF07725 IPR011713
|
605-623 | LRR_3 Leucine-rich repeat 3
|
FLVELRMRFSKLEKLWEGI |
| FPrintScan: PR00364 IPR000767
|
624-640 | DISEASERSIST Disease resistance protein
|
IPLRSLKVMDVSYSRKL |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
