PRGDB00061565 (disease resistance protein)
| disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 227438130 (FJ842774) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Brassica rapa subsp. pekinensis |
DNA Sequence
ATGGATCCAGTTCAGAACCGAATGGCTTCGGATCGAAGCTTGAAGTACGATGTCTTCATCAGCTTCCGAGGACCAGACACCCGCAAAATATTCGTTGGCCATTTGTACGGATCACTTTCCATCAGGGGAATTTTTACCTTCAAAGACGATCGGAGGCTTGAGCCAGGAGATTCCATTACCGACGAACTCTGCCAAGCCATCCGGACATCAAGGTTTGCTGTCGTGGTTATCTCCAAGAACTACGCTACTTCAAGCTGGTGCCTAGATGAGCTTCAGTTGATCATGGAACTTGTCGAGAACAAGGAGATTGAAGTTTTTCCGATTTTCTATGAAGTAAAACCTTCCGATGTCAGACATCAGCAGCTCCTAGAAAGTTTCTCTTTACGAATGACTGAGAAGGTTCCTGGTTGGAAAAAAGCTCTCAAGGATATAGCCAACCGAAAGGGCATGGAATCCTCAAAATTCTCGGACGATGCCACGATGATTGAAGAAATAGTTCAAAACATTTCAAGCCGGTTGTTATCTATGTTGCCAATACGTTTCCGTGATGTTGTCGGGATGAGAGCTCACGTGAAAGTTCTCAGCCCTCTCTTGGACATGGACTCCAAGGATGATGCTCGTATCATAGGAATCGTTGGAACAGGAGGCATTGGTAAAACCACTATAGCAAAGTATCTCTACGAAACCCATAAACTTGGATTTTCACCTCATCATTATTTCATGGAGAACGTTGCGAAACTCTGTAGAGAACATGGTCTCTTACATCTACAAAATCAACTTCTTTCTAGTATCTTCCGTGAAAAGAATGTCATGCTGGAAAGCGTTGAACACGGAAGACAACAACTTGAGTTCAGGCTTAGAAACGCAAAAGTTTTTCTCGTCTTTGATGACGTTGATGATGTTAGACAGCTTGATGCCTTGGCAAAAGAGGTTCAGTGGTTTGCACCAGGGAGCCGAATCGTCATAACCACGCGGGATAAGAGCTTGCTTAACTCCTGTGAAGTGTACGACGTTGAGTACTTGGATGATGATAAAGCACTCCTACTCTTCCAGCAGATTGCTTTTAAAGGAGGACAACCACCTTCTAGTGTCTACTCAGATTTTTCAAGTCGTGCTTCGAAACTTGCTCAAGGTCTTCCTTTGGCCGTCAAGGCTTTGGGAAGTTCTCTCCGAGGGAAGTCCGAAATGGAGTGGGATAAGGCTTTACGTTCCTTTGAAAAGACTCCTTACGATAATATTCCAAGAATATTAAATATTAGCTACGAGAGCTTGGACGAACTTAGTAAGACTGCTTTTCTTCATGTGGCATGCCTTTTCAATGGAGAACTTGTCTCGCGTGTCAAGTCTCTTCTCCACCGTGGTGAAGATGGGATACGGGTTTTAGCGGAAAAGTCTCTCATCGATTTATCTACTAATGGCCGTATAGCCATGCACCATTTGTTGGAGAAAATGGGAAGACGGAACGAATCAGGCAACGACCTTTCCCTACAACCAATCTTGTGGCAGTGGTACGACATATGTCGACTTGCAGACAAAGCAGGAACGACAAGAACTGAAGGCATCGTGCTAGATGTTTCCGAAAGGCCTAATCATATAGACTGGAAAGTTTTCATGCAGATGGAGAATCTCAAATATCTGAAAATTTACAACCACAGGCGTTACAAAAGTTTAGATTCAAGGACACAGGGCAATCCAAACGAAATTTTACAACCTTATAAACTTAGATTGCTACAGTGGGATGCATATCCTTACACAACCTTGCCTTCCAGTATCAACACAGATTGTCTTGTAGAAGTAATTCTGTGTAACAGCAAGCTCACAACTCTTTGGAGTGGAAGTCCCCCGAGACTTTCGCATTTGAAAAGGCTGAATCTTACTGGATCTATGTACCTAAAAGAACTTCCAGATCTTAAGGAAGCAGTGTATCTCGAAGAGTTGATGCTGGAAGGTTGCATTTCCCTGACAAGGATTCCAGAGTCCATTTGTAGCCTACCTAGACTACAAAAACTTGATCTATCCAACTGTGATGGGCTAAAGAATCTAATTATCATAGTAAGGGAATCCGAAGCTACTTTCTTTGAAGGCAGAAGAAGCTTGCACGTTAGATCGGTCCACATGGATTTTCTTGATGCAGAACCGTTAGCAGAAGAGTCTCGAGACATTTCTCTTACAAATCTATCAATCAAGGGGAACTTAAAAATTGAGTTGAAGGTTATTGGAGGATATGCACAACATTTTTCGTTTGTTTCTGAGCAGCATATCCCTCATCAAGTAATGTTGTTGGAGCAGCAAACAGCTAGGCTCATGTCACATCCCTACAATTTTAAGTTGCTTCACATCGTGCAAGTTAACTGCAGTGAGCAAAGGGATCCTTTCGAGTGTTATAGCTTTTCATATTTTCCCTGGTTGATGGAGCTAAATCTAATCAACTTAAACATCGAAGAAATACCAGATGACATTCATCACATGCAAGTTCTAGAGAAGTTGAACCTAAGTGGAAACTTCTTCAGGGGTTTACCTTCATCAATGACTCATCTTACGAAGTTAAAACATGTGAGGCTTTGTAACTGTCGTAGACTTGAAGCTTTGCCACAACTATATCAGCTGGAGACGCTCACACTTTCTGATTGTACCAACCTCCACACATTGGTGAGCATTTCGCAGGCAGAACAAGACCATGGAAAATACAATTTGCTTGAGCTTCGTCTTGACAACTGCAAACATGTCGAGACATTGTCGGATCAGCTTCGGTTTTTTACAAAGTTGACGTATTTAGATATCAGTCGCCACGATTTTGAAACAGTGCCTACAAGCATCAAAGACCTATCCTCGCTGATAACTCTCTGCCTCAACTATTGCATGAAACTAAAATCACTTTCAGAGCTTCCATTGAGCATTAAGCACCTATATTCACATGGCTGCATGTCCTTAGAAACTTTCTCCCTTTCAGTTGATCATTCTGTTGATGACCTTGATCTCAGCCCTTGCTTCCAACCGAATCAGTTTTTAAGTCAATTCACTCGTTTTCCATCAGGAAGACGTAGTGAAGAGGTACAGCTATGTGCTTGCATCCAGAAACCTAAGATATTGAATACGCTTGATCGAGGGATGAGGAGTGTCAGAACAATCTACACAGAGCGTTTTAGCTCCGAAACCTTGAAACTAATGGCTTTTGCTCTATGTTTGGGTGTGCTCCTTCTATGTAAGACGATGGGCAATAGCTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein | disease resistance protein [Brassica rapa subsp. pekinensis]. | MDPVQNRMASDRSLKYDVFISFRGPDTRKIFVGHLYGSLSIRGIFTFKDDRRLEPGDSITDELCQAIRTSRFAVVVISKNYATSSWCLDELQLIMELVENKEIEVFPIFYEVKPSDVRHQQLLESFSLRMTEKVPGWKKALKDIANRKGMESSKFSDDATMIEEIVQNISSRLLSMLPIRFRDVVGMRAHVKVLSPLLDMDSKDDARIIGIVGTGGIGKTTIAKYLYETHKLGFSPHHYFMENVAKLCREHGLLHLQNQLLSSIFREKNVMLESVEHGRQQLEFRLRNAKVFLVFDDVDDVRQLDALAKEVQWFAPGSRIVITTRDKSLLNSCEVYDVEYLDDDKALLLFQQIAFKGGQPPSSVYSDFSSRASKLAQGLPLAVKALGSSLRGKSEMEWDKALRSFEKTPYDNIPRILNISYESLDELSKTAFLHVACLFNGELVSRVKSLLHRGEDGIRVLAEKSLIDLSTNGRIAMHHLLEKMGRRNESGNDLSLQPILWQWYDICRLADKAGTTRTEGIVLDVSERPNHIDWKVFMQMENLKYLKIYNHRRYKSLDSRTQGNPNEILQPYKLRLLQWDAYPYTTLPSSINTDCLVEVILCNSKLTTLWSGSPPRLSHLKRLNLTGSMYLKELPDLKEAVYLEELMLEGCISLTRIPESICSLPRLQKLDLSNCDGLKNLIIIVRESEATFFEGRRSLHVRSVHMDFLDAEPLAEESRDISLTNLSIKGNLKIELKVIGGYAQHFSFVSEQHIPHQVMLLEQQTARLMSHPYNFKLLHIVQVNCSEQRDPFECYSFSYFPWLMELNLINLNIEEIPDDIHHMQVLEKLNLSGNFFRGLPSSMTHLTKLKHVRLCNCRRLEALPQLYQLETLTLSDCTNLHTLVSISQAEQDHGKYNLLELRLDNCKHVETLSDQLRFFTKLTYLDISRHDFETVPTSIKDLSSLITLCLNYCMKLKSLSELPLSIKHLYSHGCMSLETFSLSVDHSVDDLDLSPCFQPNQFLSQFTRFPSGRRSEEVQLCACIQKPKILNTLDRGMRSVRTIYTERFSSETLKLMAFALCLGVLLLCKTMGNS |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
4-150 | TIR Toll-Interleukin receptor
|
VQNRMASDRSLKYDVFISFRGPDTRKIFVGHLYGSLSIRGIFTFKDDRRLEPGDSITDELCQAIRTSRFAVVVISKNYATSSWCLDELQLIMELVENKEIEVFPIFYEVKPSDVRHQQLLESFSLRMTEKVPGWKKALKDIANRKGM |
| Gene3D: G3DSA:3.40.50.10140 | 12-136 | G3DSA:3.40.50.10140 | RSLKYDVFISFRGPDTRKIFVGHLYGSLSIRGIFTFKDDRRLEPGDSITDELCQAIRTSRFAVVVISKNYATSSWCLDELQLIMELVENKEIEVFPIFYEVKPSDVRHQQLLESFSLRMTEKVPG |
| ProfileScan: PS50104 IPR000157
|
14-122 | TIR Toll-Interleukin receptor
|
LKYDVFISFRGPDTRKIFVGHLYGSLSIRGIFTFKDDRRLEPGDSITDELCQAIRTSRFAVVVISKNYATSSWCLDELQLIMELVENKEIEVFPIFYEVKPSDVRHQQL |
| HMMSmart: SM00255 IPR000157
|
15-147 | TIR Toll-Interleukin receptor
|
KYDVFISFRGPDTRKIFVGHLYGSLSIRGIFTFKDDRRLEPGDSITDELCQAIRTSRFAVVVISKNYATSSWCLDELQLIMELVENKEIEVFPIFYEVKPSDVRHQQLLESFSLRMTEKVPGWKKALKDIANR |
| HMMPfam: PF01582 IPR000157
|
18-142 | TIR Toll-Interleukin receptor
|
VFISFRGPDTRKIFVGHLYGSLSIRGIFTFKDDRRLEPGDSITDELCQAIRTSRFAVVVISKNYATSSWCLDELQLIMELVENKEIEVFPIFYEVKPSDVRHQQLLESFSLRMTEKVPGWKKALK |
| HMMPanther: PTHR11017:SF20 | 34-998 | PTHR11017:SF20,SUBFAMILY NOT NAMED | HLYGSLSIRGIFTFKDDRRLEPGDSITDELCQAIRTSRFAVVVISKNYATSSWCLDELQLIMELVENKEIEVFPIFYEVKPSDVRHQQLLESFSLRMTEKVPGWKKALKDIANRKGMESSKFSDDATMIEEIVQNISSRLLSMLPIRFRDVVGMRAHVKVLSPLLDMDSKDDARIIGIVGTGGIGKTTIAKYLYETHKLGFSPHHYFMENVAKLCREHGLLHLQNQLLSSIFREKNVMLESVEHGRQQLEFRLRNAKVFLVFDDVDDVRQLDALAKEVQWFAPGSRIVITTRDKSLLNSCEVYDVEYLDDDKALLLFQQIAFKGGQPPSSVYSDFSSRASKLAQGLPLAVKALGSSLRGKSEMEWDKALRSFEKTPYDNIPRILNISYESLDELSKTAFLHVACLFNGELVSRVKSLLHRGEDGIRVLAEKSLIDLSTNGRIAMHHLLEKMGRRNESGNDLSLQPILWQWYDICRLADKAGTTRTEGIVLDVSERPNHIDWKVFMQMENLKYLKIYNHRRYKSLDSRTQGNPNEILQPYKLRLLQWDAYPYTTLPSSINTDCLVEVILCNSKLTTLWSGSPPRLSHLKRLNLTGSMYLKELPDLKEAVYLEELMLEGCISLTRIPESICSLPRLQKLDLSNCDGLKNLIIIVRESEATFFEGRRSLHVRSVHMDFLDAEPLAEESRDISLTNLSIKGNLKIELKVIGGYAQHFSFVSEQHIPHQVMLLEQQTARLMSHPYNFKLLHIVQVNCSEQRDPFECYSFSYFPWLMELNLINLNIEEIPDDIHHMQVLEKLNLSGNFFRGLPSSMTHLTKLKHVRLCNCRRLEALPQLYQLETLTLSDCTNLHTLVSISQAEQDHGKYNLLELRLDNCKHVETLSDQLRFFTKLTYLDISRHDFETVPTSIKDLSSLITLCLNYCMKLKSLSELPLSIKHLYSHGCMSLETFSLSVDHSVDDLDLSPCFQ |
| HMMPanther: PTHR11017 | 34-998 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | HLYGSLSIRGIFTFKDDRRLEPGDSITDELCQAIRTSRFAVVVISKNYATSSWCLDELQLIMELVENKEIEVFPIFYEVKPSDVRHQQLLESFSLRMTEKVPGWKKALKDIANRKGMESSKFSDDATMIEEIVQNISSRLLSMLPIRFRDVVGMRAHVKVLSPLLDMDSKDDARIIGIVGTGGIGKTTIAKYLYETHKLGFSPHHYFMENVAKLCREHGLLHLQNQLLSSIFREKNVMLESVEHGRQQLEFRLRNAKVFLVFDDVDDVRQLDALAKEVQWFAPGSRIVITTRDKSLLNSCEVYDVEYLDDDKALLLFQQIAFKGGQPPSSVYSDFSSRASKLAQGLPLAVKALGSSLRGKSEMEWDKALRSFEKTPYDNIPRILNISYESLDELSKTAFLHVACLFNGELVSRVKSLLHRGEDGIRVLAEKSLIDLSTNGRIAMHHLLEKMGRRNESGNDLSLQPILWQWYDICRLADKAGTTRTEGIVLDVSERPNHIDWKVFMQMENLKYLKIYNHRRYKSLDSRTQGNPNEILQPYKLRLLQWDAYPYTTLPSSINTDCLVEVILCNSKLTTLWSGSPPRLSHLKRLNLTGSMYLKELPDLKEAVYLEELMLEGCISLTRIPESICSLPRLQKLDLSNCDGLKNLIIIVRESEATFFEGRRSLHVRSVHMDFLDAEPLAEESRDISLTNLSIKGNLKIELKVIGGYAQHFSFVSEQHIPHQVMLLEQQTARLMSHPYNFKLLHIVQVNCSEQRDPFECYSFSYFPWLMELNLINLNIEEIPDDIHHMQVLEKLNLSGNFFRGLPSSMTHLTKLKHVRLCNCRRLEALPQLYQLETLTLSDCTNLHTLVSISQAEQDHGKYNLLELRLDNCKHVETLSDQLRFFTKLTYLDISRHDFETVPTSIKDLSSLITLCLNYCMKLKSLSELPLSIKHLYSHGCMSLETFSLSVDHSVDDLDLSPCFQ |
| superfamily: SSF52540 | 166-413 | SSF52540 | VQNISSRLLSMLPIRFRDVVGMRAHVKVLSPLLDMDSKDDARIIGIVGTGGIGKTTIAKYLYETHKLGFSPHHYFMENVAKLCREHGLLHLQNQLLSSIFREKNVMLESVEHGRQQLEFRLRNAKVFLVFDDVDDVRQLDALAKEVQWFAPGSRIVITTRDKSLLNSCEVYDVEYLDDDKALLLFQQIAFKGGQPPSSVYSDFSSRASKLAQGLPLAVKALGSSLRGKSEMEWDKALRSFEKTPYDNI |
| Gene3D: G3DSA:3.40.50.300 | 178-331 | G3DSA:3.40.50.300 | PIRFRDVVGMRAHVKVLSPLLDMDSKDDARIIGIVGTGGIGKTTIAKYLYETHKLGFSPHHYFMENVAKLCREHGLLHLQNQLLSSIFREKNVMLESVEHGRQQLEFRLRNAKVFLVFDDVDDVRQLDALAKEVQWFAPGSRIVITTRDKSLLN |
| HMMPfam: PF00931 IPR002182
|
193-442 | NB-ARC,NBS NB-ARC
|
VLSPLLDMDSKDDARIIGIVGTGGIGKTTIAKYLYETHKLGFSPHHYFMENVAKLCREHGLLHLQNQLLSSIFREKNVMLESVEHGRQQLEFRLRNAKVFLVFDDVDDVRQLDALAKEVQWFAPGSRIVITTRDKSLLNSCEVYDVEYLDDDKALLLFQQIAFKGGQPPSSVYSDFSSRASKLAQGLPLAVKALGSSLRGKSEMEWDKALRSFEKTPYDNIPRILNISYESLDELSKTAFLHVACLFNGE |
| FPrintScan: PR00364 IPR000767
|
208-223 | DISEASERSIST Disease resistance protein
|
IIGIVGTGGIGKTTIA |
| FPrintScan: PR00364 IPR000767
|
285-299 | DISEASERSIST Disease resistance protein
|
RLRNAKVFLVFDDVD |
| FPrintScan: PR00364 IPR000767
|
376-390 | DISEASERSIST Disease resistance protein
|
AQGLPLAVKALGSSL |
| superfamily: SSF46785 | 411-511 | SSF46785 | DNIPRILNISYESLDELSKTAFLHVACLFNGELVSRVKSLLHRGEDGIRVLAEKSLIDLSTNGRIAMHHLLEKMGRRNESGNDLSLQPILWQWYDICRLAD |
| superfamily: SSF52058 | 490-1022 | SSF52058,LRR | SGNDLSLQPILWQWYDICRLADKAGTTRTEGIVLDVSERPNHIDWKVFMQMENLKYLKIYNHRRYKSLDSRTQGNPNEILQPYKLRLLQWDAYPYTTLPSSINTDCLVEVILCNSKLTTLWSGSPPRLSHLKRLNLTGSMYLKELPDLKEAVYLEELMLEGCISLTRIPESICSLPRLQKLDLSNCDGLKNLIIIVRESEATFFEGRRSLHVRSVHMDFLDAEPLAEESRDISLTNLSIKGNLKIELKVIGGYAQHFSFVSEQHIPHQVMLLEQQTARLMSHPYNFKLLHIVQVNCSEQRDPFECYSFSYFPWLMELNLINLNIEEIPDDIHHMQVLEKLNLSGNFFRGLPSSMTHLTKLKHVRLCNCRRLEALPQLYQLETLTLSDCTNLHTLVSISQAEQDHGKYNLLELRLDNCKHVETLSDQLRFFTKLTYLDISRHDFETVPTSIKDLSSLITLCLNYCMKLKSLSELPLSIKHLYSHGCMSLETFSLSVDHSVDDLDLSPCFQPNQFLSQFTRFPSGRRSEEVQLCA |
| Gene3D: G3DSA:3.80.10.10 | 531-676 | G3DSA:3.80.10.10 | HIDWKVFMQMENLKYLKIYNHRRYKSLDSRTQGNPNEILQPYKLRLLQWDAYPYTTLPSSINTDCLVEVILCNSKLTTLWSGSPPRLSHLKRLNLTGSMYLKELPDLKEAVYLEELMLEGCISLTRIPESICSLPRLQKLDLSNCD |
| FPrintScan: PR00364 IPR000767
|
662-678 | DISEASERSIST Disease resistance protein
|
CSLPRLQKLDLSNCDGL |
| Gene3D: G3DSA:3.80.10.10 | 796-984 | G3DSA:3.80.10.10 | SFSYFPWLMELNLINLNIEEIPDDIHHMQVLEKLNLSGNFFRGLPSSMTHLTKLKHVRLCNCRRLEALPQLYQLETLTLSDCTNLHTLVSISQAEQDHGKYNLLELRLDNCKHVETLSDQLRFFTKLTYLDISRHDFETVPTSIKDLSSLITLCLNYCMKLKSLSELPLSIKHLYSHGCMSLETFSLSV |
List of References
Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
