PRGDB00061573 (disease resistance protein)

disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	227438114 (FJ842766)
Gene Class	TNL
Domain Type	NBS, TIR, LRR, Others
Gene Species	Brassica rapa subsp. pekinensis
	Comment?

Brassica rapa subsp. pekinensis isolate BrTN4 disease resistance protein gene, complete cds.

DNA Sequence

ATGGATTCTTCTTCTTCTTCATCTTCATCAACTCGCCACTACAACTACGATGTCTTCCCAAGCTTCTCCGGTCAAGATGTCCGCAGAACTTTTCTCAGCCACTTTCTTGAAGCTTTGAAAAGCAAGGGAATCAAAACATTCATAGATAATGGGATCATAAGAAGCGAGTCTATCAACTCTGAGCTCATAAGAGCTATCAGGGAATCAAGGATTGCTGTCGTGATCCTATCTAAGAACTATGCTTCTTCGAGCTGGTGTCTAAACGAGTTGCAGCTGATCATGGAGTGCACGGTTTCTTTAGGCCAAACTGTGATGACAGTCTTTTACGATGTGGAACCATCTGATGTTAGAAAGCAGACTGGAGATTTTGGAAAGGCCTTTAAAGAAACTTGTTACCGGAAGACAGAGGAAGAGAAGAAGAAATGGAGTGAAGCTTTATCTCAAGTTGCAGTTATTGCCGGAGAACATTCTGTTTCATGGTACTGTTCCAAGCTTTTGTACAATGCATTTTTTATATATTATGATTGTTTTTTAGAATTACCTAGAATATCAGCAACACATACTATTCAAAAAATAGCTCAACAGAGGAAACGTTCCCAAATAGATTTAGAGTATGGAGTGGAGGTAAGGGCTGGTGAGGCTGAGATGATCTCGAAAATCGTCATGGATGTATCTAATGAGTTACCATCAACGGATTTCGATCAGTTAGTTGGAGTTGAAGCTCATCTAGAAAAGATGAGATCGGTCATATGCTTAGACTCCGACGAGGTGAAGATTGTGGGGATCTGGGGTCCTGATGGTATTGGCAAAAGCACCATAGTAAGAGCTTTATACAACAACATTTCCAGCAACTTCCAACTTAAGTTTTATAGGGAGAGAGGTCCAACTAACTCGATGGGATTACTATCGGAAGTGCTATCTGGAATGTTAGATCATAGAGACATGAAGATACTTGACCTGCAAGACGCGCAATATAGGTTAACGCGCCAGAGAGTACTTCTTGTTCTTGATGATGTCGCTTCCCAGCATCTACAAGTTTTGCAAAATCTATTTCGGAGTCTTTTATTCGGAAGTAAGGTGATTGTGGTGAATAAAGATATAGAAACATTTACTCATAATGGTATAGAGCAGATATACAAAGTTCCTTACCCATCGAGCGAAGAGGCTCTACAGATCTTTTCATACTCTGCGTTTGGGCAAAGCTCTCCGCCCAGAGGATACTTTAAGCATGCTGTTGAAGTATCTAAGCTTATTGCACCTTTTCCACTTGGTCTTAAGGTCTTGGGTTCGGCTCTACGTGGGAAGAGCGAAGAGGAGTGGACAACGGCACCGGCTAAACTCAGAGCCTATCTTGGGGATAAGGATATTGAGAAAACAATTAGATTTGCTGTCGATGGCTTATCTGAGAAACATAAAAATTTGTATTTTTCATTAACTTCAGCTAGTAACCGGGGTAAGAACCTGAAGGACTCCATATACTTGCTAGCCAAGGGAGACGACTGGGACGTGGAGAAAGAAATACAAACCCTAGCTGACATGGCTCTCATCTATATATCTAGTGAAGGAGAAATCATGATGCACGATTTGCTATCGAGGCCTCCTACTGTCGTATCACCATTCATTTGGTTCCTCCTAGATTACTATTACGCCGGAACTGGCAGAAGAAAAGAATCACGATATGGGTCCAACTATTTTCACGATGGAGCCAATACCATGTCCTTGTCATCTACGTATATGAACCAGGGGCGGAGGTAG

Protein sequences

Name	Description	Sequence
disease resistance protein	disease resistance protein [Brassica rapa subsp. pekinensis].	MDSSSSSSSSTRHYNYDVFPSFSGQDVRRTFLSHFLEALKSKGIKTFIDNGIIRSESINSELIRAIRESRIAVVILSKNYASSSWCLNELQLIMECTVSLGQTVMTVFYDVEPSDVRKQTGDFGKAFKETCYRKTEEEKKKWSEALSQVAVIAGEHSVSWYCSKLLYNAFFIYYDCFLELPRISATHTIQKIAQQRKRSQIDLEYGVEVRAGEAEMISKIVMDVSNELPSTDFDQLVGVEAHLEKMRSVICLDSDEVKIVGIWGPDGIGKSTIVRALYNNISSNFQLKFYRERGPTNSMGLLSEVLSGMLDHRDMKILDLQDAQYRLTRQRVLLVLDDVASQHLQVLQNLFRSLLFGSKVIVVNKDIETFTHNGIEQIYKVPYPSSEEALQIFSYSAFGQSSPPRGYFKHAVEVSKLIAPFPLGLKVLGSALRGKSEEEWTTAPAKLRAYLGDKDIEKTIRFAVDGLSEKHKNLYFSLTSASNRGKNLKDSIYLLAKGDDWDVEKEIQTLADMALIYISSEGEIMMHDLLSRPPTVVSPFIWFLLDYYYAGTGRRKESRYGSNYFHDGANTMSLSSTYMNQGRR

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52200 IPR000157	4-155	TIR Toll-Interleukin receptor	SSSSSSSTRHYNYDVFPSFSGQDVRRTFLSHFLEALKSKGIKTFIDNGIIRSESINSELIRAIRESRIAVVILSKNYASSSWCLNELQLIMECTVSLGQTVMTVFYDVEPSDVRKQTGDFGKAFKETCYRKTEEEKKKWSEALSQVAVIAGE
Gene3D: G3DSA:3.40.50.10140	11-150	G3DSA:3.40.50.10140	TRHYNYDVFPSFSGQDVRRTFLSHFLEALKSKGIKTFIDNGIIRSESINSELIRAIRESRIAVVILSKNYASSSWCLNELQLIMECTVSLGQTVMTVFYDVEPSDVRKQTGDFGKAFKETCYRKTEEEKKKWSEALSQVA
ProfileScan: PS50104 IPR000157	14-152	TIR Toll-Interleukin receptor	YNYDVFPSFSGQDVRRTFLSHFLEALKSKGIKTFIDNGIIRSESINSELIRAIRESRIAVVILSKNYASSSWCLNELQLIMECTVSLGQTVMTVFYDVEPSDVRKQTGDFGKAFKETCYRKTEEEKKKWSEALSQVAVI
HMMSmart: SM00255 IPR000157	15-152	TIR Toll-Interleukin receptor	NYDVFPSFSGQDVRRTFLSHFLEALKSKGIKTFIDNGIIRSESINSELIRAIRESRIAVVILSKNYASSSWCLNELQLIMECTVSLGQTVMTVFYDVEPSDVRKQTGDFGKAFKETCYRKTEEEKKKWSEALSQVAVI
HMMPfam: PF01582 IPR000157	18-147	TIR Toll-Interleukin receptor	VFPSFSGQDVRRTFLSHFLEALKSKGIKTFIDNGIIRSESINSELIRAIRESRIAVVILSKNYASSSWCLNELQLIMECTVSLGQTVMTVFYDVEPSDVRKQTGDFGKAFKETCYRKTEEEKKKWSEALS
HMMPanther: PTHR11017	85-530	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	WCLNELQLIMECTVSLGQTVMTVFYDVEPSDVRKQTGDFGKAFKETCYRKTEEEKKKWSEALSQVAVIAGEHSVSWYCSKLLYNAFFIYYDCFLELPRISATHTIQKIAQQRKRSQIDLEYGVEVRAGEAEMISKIVMDVSNELPSTDFDQLVGVEAHLEKMRSVICLDSDEVKIVGIWGPDGIGKSTIVRALYNNISSNFQLKFYRERGPTNSMGLLSEVLSGMLDHRDMKILDLQDAQYRLTRQRVLLVLDDVASQHLQVLQNLFRSLLFGSKVIVVNKDIETFTHNGIEQIYKVPYPSSEEALQIFSYSAFGQSSPPRGYFKHAVEVSKLIAPFPLGLKVLGSALRGKSEEEWTTAPAKLRAYLGDKDIEKTIRFAVDGLSEKHKNLYFSLTSASNRGKNLKDSIYLLAKGDDWDVEKEIQTLADMALIYISSEGEIMMHDLL
HMMPanther: PTHR11017:SF20	85-530	PTHR11017:SF20,SUBFAMILY NOT NAMED	WCLNELQLIMECTVSLGQTVMTVFYDVEPSDVRKQTGDFGKAFKETCYRKTEEEKKKWSEALSQVAVIAGEHSVSWYCSKLLYNAFFIYYDCFLELPRISATHTIQKIAQQRKRSQIDLEYGVEVRAGEAEMISKIVMDVSNELPSTDFDQLVGVEAHLEKMRSVICLDSDEVKIVGIWGPDGIGKSTIVRALYNNISSNFQLKFYRERGPTNSMGLLSEVLSGMLDHRDMKILDLQDAQYRLTRQRVLLVLDDVASQHLQVLQNLFRSLLFGSKVIVVNKDIETFTHNGIEQIYKVPYPSSEEALQIFSYSAFGQSSPPRGYFKHAVEVSKLIAPFPLGLKVLGSALRGKSEEEWTTAPAKLRAYLGDKDIEKTIRFAVDGLSEKHKNLYFSLTSASNRGKNLKDSIYLLAKGDDWDVEKEIQTLADMALIYISSEGEIMMHDLL
superfamily: SSF52540	219-454	SSF52540	KIVMDVSNELPSTDFDQLVGVEAHLEKMRSVICLDSDEVKIVGIWGPDGIGKSTIVRALYNNISSNFQLKFYRERGPTNSMGLLSEVLSGMLDHRDMKILDLQDAQYRLTRQRVLLVLDDVASQHLQVLQNLFRSLLFGSKVIVVNKDIETFTHNGIEQIYKVPYPSSEEALQIFSYSAFGQSSPPRGYFKHAVEVSKLIAPFPLGLKVLGSALRGKSEEEWTTAPAKLRAYLGDK
Gene3D: G3DSA:3.40.50.300	232-270	G3DSA:3.40.50.300	DFDQLVGVEAHLEKMRSVICLDSDEVKIVGIWGPDGIGK
HMMPfam: PF00931 IPR002182	240-494	NB-ARC,NBS NB-ARC	EAHLEKMRSVICLDSDEVKIVGIWGPDGIGKSTIVRALYNNISSNFQLKFYRERGPTNSMGLLSEVLSGMLDHRDMKILDLQDAQYRLTRQRVLLVLDDVASQHLQVLQNLFRSLLFGSKVIVVNKDIETFTHNGIEQIYKVPYPSSEEALQIFSYSAFGQSSPPRGYFKHAVEVSKLIAPFPLGLKVLGSALRGKSEEEWTTAPAKLRAYLGDKDIEKTIRFAVDGLSEKHKNLYFSLTSASNRGKNLKDSIYL
FPrintScan: PR00364 IPR000767	259-274	DISEASERSIST Disease resistance protein	IVGIWGPDGIGKSTIV
Gene3D: G3DSA:3.40.50.300	271-356	G3DSA:3.40.50.300	STIVRALYNNISSNFQLKFYRERGPTNSMGLLSEVLSGMLDHRDMKILDLQDAQYRLTRQRVLLVLDDVASQHLQVLQNLFRSLLF
FPrintScan: PR00364 IPR000767	326-340	DISEASERSIST Disease resistance protein	RLTRQRVLLVLDDVA
FPrintScan: PR00364 IPR000767	418-432	DISEASERSIST Disease resistance protein	IAPFPLGLKVLGSAL

List of References

Jeong-Hwan Mun, Hee-Ju Yu, Soomin Park, Beom-Seok Park
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.
Mol. Genet. Genomics: 2009, 282(6);617-31
PubMed:19838736 WorldCat.org DOI (I p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show