PRGDB00061583 (disease-resistance protein)

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disease-resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 223452612 (FJ014882)
Gene Class T
Domain Type TIR, LRR
Gene Species Glycine max

Comment?

Glycine max clone cw21 disease-resistance protein mRNA, complete cds.

DNA Sequence

ATGGCTGCAACAACAAGTTCCCGTGCATCCATCTACGATGTGTTCCTCAACTTCAGAGGGGAAGACACACGCTATGGTTTCACCAGCAATCTCTACAGGGCTCTTTCTGACAAGGGAATTCGTACCTTCTTTGACGAAGAGAAGCTTCACAGCGGAGAGGAAATAACACCTGCACTTTTGAAGGCAATTAAAGATTCCAGAATTGCCATCACTGTGCTCTCTGAAGACTTTGCTTCTTCCTCATTTTGCTTAGATGAACTTACATCCATTGTTCACTGCGCCCAGTATAATGGGATGATGATTATACCAGTGTTTTATAAGGTGTATCCTTCTGATGTCAGACACCAGAAGGGTACTTATGGAGAAGCATTGGCTAAGCATAAGATAAGATTTCCAGAAAAGTTCCAGAATTGGGAGATGGCTCTGCGTCAAGTTGCTGACTTGTCTGGCTTTCATTTCAAATACAGAGATGAATATGAGTACAAGTTTATTGAGAGAATTGTTGCGTCGGTCTCTGAGAAGATTAATCCTGCTAGAGTACATGTTGCCGATCTGCCTGTTGAACAAGAGTCCAAAGTGCAAGGAACTCATCAAGAGCAAGAATACAGAGAGGCTTTCAAGGTGTTTGACAAGGATCAAAATGGCTACATTTCAGCAAGTGAGTTGAGGCAAGTTCTGATCAAACTGGGTGAAAACACAACTGCTGGAGAGGTGGAGGAGATGATTGCAACTGCAGATTTGGATGGTGATGGTCAAATTAGCTATGAGGAATTTGTTAAGACTATGAAAATTTAA


Protein sequences

Name Description Sequence
disease-resistance protein disease-resistance protein [Glycine max].

MAATTSSRASIYDVFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADLSGFHFKYRDEYEYKFIERIVASVSEKINPARVHVADLPVEQESKVQGTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVKTMKI

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-151 TIR
Toll-Interleukin receptor

MAATTSSRASIYDVFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADLSGF

Gene3D: G3DSA:3.40.50.10140
9-145 G3DSA:3.40.50.10140

ASIYDVFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQV

ProfileScan: PS50104
IPR000157
10-148 TIR
Toll-Interleukin receptor

SIYDVFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADL

HMMSmart: SM00255
IPR000157
11-148 TIR
Toll-Interleukin receptor

IYDVFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADL

HMMPfam: PF01582
IPR000157
14-142 TIR
Toll-Interleukin receptor

VFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMAL

HMMPanther: PTHR23050
192-262 PTHR23050,CALCIUM BINDING PROTEIN

KVQGTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVKTM

HMMPanther: PTHR23050:SF20
192-262 PTHR23050:SF20,CALMODULIN

KVQGTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVKTM

superfamily: SSF47473
194-263 SSF47473

QGTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVKTMK

Gene3D: G3DSA:1.10.238.10
IPR011992
194-263 EF-Hand_type
EF-hand-like domain

QGTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVKTMK

ProfileScan: PS50222
IPR018249
197-232 EF_HAND_2
EF-HAND 2

HQEQEYREAFKVFDKDQNGYISASELRQVLIKLGEN

HMMSmart: SM00054
IPR002048
201-229 EFh
Calcium-binding EF-hand

EYREAFKVFDKDQNGYISASELRQVLIKL

HMMPfam: PF13499
202-260 EF_hand_5,EF-hand domain pair

YREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVK

PatternScan: PS00018
IPR018247
210-222 EF_HAND_1
EF-Hand 1, calcium-binding site

DKDQNGYISASEL

ProfileScan: PS50222
IPR018249
233-264 EF_HAND_2
EF-HAND 2

TTAGEVEEMIATADLDGDGQISYEEFVKTMKI

HMMSmart: SM00054
IPR002048
237-264 EFh
Calcium-binding EF-hand

EVEEMIATADLDGDGQISYEEFVKTMKI

PatternScan: PS00018
IPR018247
246-258 EF_HAND_1
EF-Hand 1, calcium-binding site

DLDGDGQISYEEF






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Analyses

Blast

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