PRGDB00061583 (disease-resistance protein)
| disease-resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 223452612 (FJ014882) |
| Gene Class | T |
| Domain Type | TIR, LRR |
| Gene Species | Glycine max |
DNA Sequence
ATGGCTGCAACAACAAGTTCCCGTGCATCCATCTACGATGTGTTCCTCAACTTCAGAGGGGAAGACACACGCTATGGTTTCACCAGCAATCTCTACAGGGCTCTTTCTGACAAGGGAATTCGTACCTTCTTTGACGAAGAGAAGCTTCACAGCGGAGAGGAAATAACACCTGCACTTTTGAAGGCAATTAAAGATTCCAGAATTGCCATCACTGTGCTCTCTGAAGACTTTGCTTCTTCCTCATTTTGCTTAGATGAACTTACATCCATTGTTCACTGCGCCCAGTATAATGGGATGATGATTATACCAGTGTTTTATAAGGTGTATCCTTCTGATGTCAGACACCAGAAGGGTACTTATGGAGAAGCATTGGCTAAGCATAAGATAAGATTTCCAGAAAAGTTCCAGAATTGGGAGATGGCTCTGCGTCAAGTTGCTGACTTGTCTGGCTTTCATTTCAAATACAGAGATGAATATGAGTACAAGTTTATTGAGAGAATTGTTGCGTCGGTCTCTGAGAAGATTAATCCTGCTAGAGTACATGTTGCCGATCTGCCTGTTGAACAAGAGTCCAAAGTGCAAGGAACTCATCAAGAGCAAGAATACAGAGAGGCTTTCAAGGTGTTTGACAAGGATCAAAATGGCTACATTTCAGCAAGTGAGTTGAGGCAAGTTCTGATCAAACTGGGTGAAAACACAACTGCTGGAGAGGTGGAGGAGATGATTGCAACTGCAGATTTGGATGGTGATGGTCAAATTAGCTATGAGGAATTTGTTAAGACTATGAAAATTTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease-resistance protein | disease-resistance protein [Glycine max]. | MAATTSSRASIYDVFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADLSGFHFKYRDEYEYKFIERIVASVSEKINPARVHVADLPVEQESKVQGTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVKTMKI |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
1-151 | TIR Toll-Interleukin receptor
|
MAATTSSRASIYDVFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADLSGF |
| Gene3D: G3DSA:3.40.50.10140 | 9-145 | G3DSA:3.40.50.10140 | ASIYDVFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQV |
| ProfileScan: PS50104 IPR000157
|
10-148 | TIR Toll-Interleukin receptor
|
SIYDVFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADL |
| HMMSmart: SM00255 IPR000157
|
11-148 | TIR Toll-Interleukin receptor
|
IYDVFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMALRQVADL |
| HMMPfam: PF01582 IPR000157
|
14-142 | TIR Toll-Interleukin receptor
|
VFLNFRGEDTRYGFTSNLYRALSDKGIRTFFDEEKLHSGEEITPALLKAIKDSRIAITVLSEDFASSSFCLDELTSIVHCAQYNGMMIIPVFYKVYPSDVRHQKGTYGEALAKHKIRFPEKFQNWEMAL |
| HMMPanther: PTHR23050 | 192-262 | PTHR23050,CALCIUM BINDING PROTEIN | KVQGTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVKTM |
| HMMPanther: PTHR23050:SF20 | 192-262 | PTHR23050:SF20,CALMODULIN | KVQGTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVKTM |
| superfamily: SSF47473 | 194-263 | SSF47473 | QGTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVKTMK |
| Gene3D: G3DSA:1.10.238.10 IPR011992
|
194-263 | EF-Hand_type EF-hand-like domain
|
QGTHQEQEYREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVKTMK |
| ProfileScan: PS50222 IPR018249
|
197-232 | EF_HAND_2 EF-HAND 2
|
HQEQEYREAFKVFDKDQNGYISASELRQVLIKLGEN |
| HMMSmart: SM00054 IPR002048
|
201-229 | EFh Calcium-binding EF-hand
|
EYREAFKVFDKDQNGYISASELRQVLIKL |
| HMMPfam: PF13499 | 202-260 | EF_hand_5,EF-hand domain pair | YREAFKVFDKDQNGYISASELRQVLIKLGENTTAGEVEEMIATADLDGDGQISYEEFVK |
| PatternScan: PS00018 IPR018247
|
210-222 | EF_HAND_1 EF-Hand 1, calcium-binding site
|
DKDQNGYISASEL |
| ProfileScan: PS50222 IPR018249
|
233-264 | EF_HAND_2 EF-HAND 2
|
TTAGEVEEMIATADLDGDGQISYEEFVKTMKI |
| HMMSmart: SM00054 IPR002048
|
237-264 | EFh Calcium-binding EF-hand
|
EVEEMIATADLDGDGQISYEEFVKTMKI |
| PatternScan: PS00018 IPR018247
|
246-258 | EF_HAND_1 EF-Hand 1, calcium-binding site
|
DLDGDGQISYEEF |
List of Contributions
There has not been any contribution yet.
