PRGDB00061592 (TIR-NBS class disease resistance protein)
| TIR-NBS class disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 334188266 (NM_001203565) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGTCTTCCTCTTCTTCCTCTTCCAGTCAGAAATTCTACGTTTTTCTGAGCTTCCAAGGCCTGGACACCCGTAGAACCTTTGTCAGCCATCTCCGCCGTTCATTGGACAGAAAAGGCATTAAGACTTTTGAAGATGAAAATGAGTCTCTGAGAGGTGAATTAGATTCTTCTGCGGTCTATCAGACAATTGGAGAGTCAAAAGTGGCCGTTGTCTTGATATCGGTGAACTATGCCTCTTCACCTTTGTGCCTGGATAGTCTCCTTAAGATTTTGAAGTTTCACCAGTCAGGTTCACTCGTTTTGATACCAATCTTCTATGAAGTTGATCCTATGGATGTAAGAAAACAAATTGGGAAACTGTACGAAGCATTCTCATTGCATGAGAGAGAAAACCCTGAAAAGGTTCAAACATGGAGGCAAGCACTGTCCCAACTGGTCAGCATTCCGGGCGGCCAGTACTCAGAGATTTGGGATGGTGATGCAGAGCTGATCCATCAAATTACCGTTGACATATGGAATATATTTGTCGCTTCCAAGTCAAGTGATTTGTGTGGTCTTGTGGGGATGGATCGCCACATGAAAGCCATGTATAGATTGTTAGATTTAGGATTGAAAGATGAAGTTCGTCATATCAAAATTTGGGGTAGCCGAGACATCGGCAAGACTGAGTTTGCAAAATATCTGTATGAAGAGATTTTGCACAACTTTGATACCCATGTCATGTTAAAAGCTCCACAAAGAATTTCGCGTTTTGAGGAGGTTCGTTTGGCAGAATATGTGTGTCTTCGACTTGAGAAAGCAAGAACTTTGTCAAAAACATCGAAGGACACTGCATCAAGGTTTCTCCTCGTACTGGATAATGTGAATGAATCATTTGACCCAATAAGAAAACTTGCAAGGGTGATTAGTTCTTTTGGTCCAGGGAGCAGGATCATTACAACCACCCGAAACTTGCAGTTCAGTTCGACTTCCCCTTTACCGTTTCAATATGAAGTTTTAGGGCTGGAGTTCTCTGAAGCTCTTCAGCTCTTCTGTCTCCATGCTTTCGAGCAGACTCATCCTTTTCTTGGTTTTGAAGACCTTTCATGTCGTGCAGTGAAACTCGCAGGTGGTTTTCCTTTATCCTTAAAAAGATTAGGCTCCAGATTTTCTGGTAGAAAGAAGGATGAATGGGAAGTGATCTTGTTTGGATACGAAAGATCAACTGTTAACGGTGTTATAAATCCCGAAAAAAATAGCCTGGATGGGCTATACGAATACAGCTCTATCATGGAAACTTTTTCAAGTCAACCGATTTCAAGCACAACAAGAAGTTTTGAAGACCTTGTGGGGATGAATCATCGTATGCAAGCTTTGTCGGCATTGTTAGAGCTAGAATCCGACAAAGAAGTTCGTGTAGTTGGAATTTGGGGTACAGGAGGCATTGGTAAAACAACTCTATCAAGATATGCTTACGAGAGAATCTCGCAGCAATTCCACACCCATGCTTTTCTAGAAAATGCTCAAGAGAGCAGTTCATCCTGTCTAGAAGAACGGTTTCTATCCAAAGCTATCCAAAGAGAAGCGCTTGCAGTAAGGAACTCTAAAGACTGTCCAGAAATAATGAAATCATTGATTCAACACCGAAAAGTTCTGCTTATAGTTGATGATGTGGATAACGTCAAGACGTTAGAGGAAGTCTTCAAGATCACCAGTTGGTTGGTCCCTGGAAGTAGAGTTATTGTGACTGCACGAGATGAGAGTTTTCTTCTGGCCAGTGGAGTGAAATATATTTTTGAAGTTAAGGGCCTGAGATTTGACCAAGCTCTTCAACTTTTCTATCAATTCGCTTTCAAGCAGAAATCACCTCCGGTTCGTGTTTTGAAGAAAAGCAGAATAAAGGTACAATTTGAGTACCAGTCGAATAGCCATGGCAAGTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| TIR-NBS class disease resistance protein | TIR-NBS class disease resistance protein [Arabidopsis thaliana]. | MSSSSSSSSQKFYVFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALSQLVSIPGGQYSEIWDGDAELIHQITVDIWNIFVASKSSDLCGLVGMDRHMKAMYRLLDLGLKDEVRHIKIWGSRDIGKTEFAKYLYEEILHNFDTHVMLKAPQRISRFEEVRLAEYVCLRLEKARTLSKTSKDTASRFLLVLDNVNESFDPIRKLARVISSFGPGSRIITTTRNLQFSSTSPLPFQYEVLGLEFSEALQLFCLHAFEQTHPFLGFEDLSCRAVKLAGGFPLSLKRLGSRFSGRKKDEWEVILFGYERSTVNGVINPEKNSLDGLYEYSSIMETFSSQPISSTTRSFEDLVGMNHRMQALSALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTARDESFLLASGVKYIFEVKGLRFDQALQLFYQFAFKQKSPPVRVLKKSRIKVQFEYQSNSHGK |
| TIR-NBS class disease resistance protein | TIR-NBS class disease resistance protein [Arabidopsis thaliana]. | MSSSSSSSSQKFYVFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALSQLVSIPGGQYSEIWDGDAELIHQITVDIWNIFVASKSSDLCGLVGMDRHMKAMYRLLDLGLKDEVRHIKIWGSRDIGKTEFAKYLYEEILHNFDTHVMLKAPQRISRFEEVRLAEYVCLRLEKARTLSKTSKDTASRFLLVLDNVNESFDPIRKLARVISSFGPGSRIITTTRNLQFSSTSPLPFQYEVLGLEFSEALQLFCLHAFEQTHPFLGFEDLSCRAVKLAGGFPLSLKRLGSRFSGRKKDEWEVILFGYERSTVNGVINPEKNSLDGLYEYSSIMETFSSQPISSTTRSFEDLVGMNHRMQALSALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTARDESFLLASGVKYIFEVKGLRFDQALQLFYQFAFKQKSPPVRVLKKSRIKVQFEYQSNSHGK |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
1-150 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
MSSSSSSSSQKFYVFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALSQLVSIPG |
| superfamily: SSF52200 IPR000157
|
1-150 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
MSSSSSSSSQKFYVFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALSQLVSIPG |
| Gene3D: G3DSA:3.40.50.10140 | 8-145 | G3DSA:3.40.50.10140 | SSQKFYVFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALSQL |
| Gene3D: G3DSA:3.40.50.10140 | 8-145 | G3DSA:3.40.50.10140 | SSQKFYVFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALSQL |
| ProfileScan: PS50104 IPR000157
|
10-148 | TIR Toll-Interleukin receptor
|
QKFYVFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALSQLVSI |
| ProfileScan: PS50104 IPR000157
|
10-148 | TIR Toll-Interleukin receptor
|
QKFYVFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALSQLVSI |
| HMMSmart: SM00255 IPR000157
|
11-148 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
KFYVFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALSQLVSI |
| HMMSmart: SM00255 IPR000157
|
11-148 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
KFYVFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALSQLVSI |
| HMMPfam: PF01582 IPR000157
|
14-143 | TIR Toll-Interleukin receptor
|
VFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALS |
| HMMPfam: PF01582 IPR000157
|
14-143 | TIR Toll-Interleukin receptor
|
VFLSFQGLDTRRTFVSHLRRSLDRKGIKTFEDENESLRGELDSSAVYQTIGESKVAVVLISVNYASSPLCLDSLLKILKFHQSGSLVLIPIFYEVDPMDVRKQIGKLYEAFSLHERENPEKVQTWRQALS |
| superfamily: SSF52540 | 169-406 | SSF52540 | VDIWNIFVASKSSDLCGLVGMDRHMKAMYRLLDLGLKDEVRHIKIWGSRDIGKTEFAKYLYEEILHNFDTHVMLKAPQRISRFEEVRLAEYVCLRLEKARTLSKTSKDTASRFLLVLDNVNESFDPIRKLARVISSFGPGSRIITTTRNLQFSSTSPLPFQYEVLGLEFSEALQLFCLHAFEQTHPFLGFEDLSCRAVKLAGGFPLSLKRLGSRFSGRKKDEWEVILFGYERSTVNGV |
| superfamily: SSF52540 | 169-406 | SSF52540 | VDIWNIFVASKSSDLCGLVGMDRHMKAMYRLLDLGLKDEVRHIKIWGSRDIGKTEFAKYLYEEILHNFDTHVMLKAPQRISRFEEVRLAEYVCLRLEKARTLSKTSKDTASRFLLVLDNVNESFDPIRKLARVISSFGPGSRIITTTRNLQFSSTSPLPFQYEVLGLEFSEALQLFCLHAFEQTHPFLGFEDLSCRAVKLAGGFPLSLKRLGSRFSGRKKDEWEVILFGYERSTVNGV |
| HMMPfam: PF00931 IPR002182
|
194-396 | NB-ARC,NBS NB-ARC
|
KAMYRLLDLGLKDEVRHIKIWGSRDIGKTEFAKYLYEEILHNFDTHVMLKAPQRISRFEEVRLAEYVCLRLEKARTLSKTSKDTASRFLLVLDNVNESFDPIRKLARVISSFGPGSRIITTTRNLQFSSTSPLPFQYEVLGLEFSEALQLFCLHAFEQTHPFLGFEDLSCRAVKLAGGFPLSLKRLGSRFSGRKKDEWEVILF |
| HMMPfam: PF00931 IPR002182
|
194-396 | NB-ARC,NBS NB-ARC
|
KAMYRLLDLGLKDEVRHIKIWGSRDIGKTEFAKYLYEEILHNFDTHVMLKAPQRISRFEEVRLAEYVCLRLEKARTLSKTSKDTASRFLLVLDNVNESFDPIRKLARVISSFGPGSRIITTTRNLQFSSTSPLPFQYEVLGLEFSEALQLFCLHAFEQTHPFLGFEDLSCRAVKLAGGFPLSLKRLGSRFSGRKKDEWEVILF |
| HMMPanther: PTHR11017:SF20 | 292-617 | PTHR11017:SF20,SUBFAMILY NOT NAMED | FDPIRKLARVISSFGPGSRIITTTRNLQFSSTSPLPFQYEVLGLEFSEALQLFCLHAFEQTHPFLGFEDLSCRAVKLAGGFPLSLKRLGSRFSGRKKDEWEVILFGYERSTVNGVINPEKNSLDGLYEYSSIMETFSSQPISSTTRSFEDLVGMNHRMQALSALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTARDESFLLASGVKYIFEVKGLRFDQALQLFYQFAFKQKSPP |
| HMMPanther: PTHR11017 | 292-617 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | FDPIRKLARVISSFGPGSRIITTTRNLQFSSTSPLPFQYEVLGLEFSEALQLFCLHAFEQTHPFLGFEDLSCRAVKLAGGFPLSLKRLGSRFSGRKKDEWEVILFGYERSTVNGVINPEKNSLDGLYEYSSIMETFSSQPISSTTRSFEDLVGMNHRMQALSALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTARDESFLLASGVKYIFEVKGLRFDQALQLFYQFAFKQKSPP |
| HMMPanther: PTHR11017:SF20 | 292-617 | PTHR11017:SF20,SUBFAMILY NOT NAMED | FDPIRKLARVISSFGPGSRIITTTRNLQFSSTSPLPFQYEVLGLEFSEALQLFCLHAFEQTHPFLGFEDLSCRAVKLAGGFPLSLKRLGSRFSGRKKDEWEVILFGYERSTVNGVINPEKNSLDGLYEYSSIMETFSSQPISSTTRSFEDLVGMNHRMQALSALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTARDESFLLASGVKYIFEVKGLRFDQALQLFYQFAFKQKSPP |
| HMMPanther: PTHR11017 | 292-617 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | FDPIRKLARVISSFGPGSRIITTTRNLQFSSTSPLPFQYEVLGLEFSEALQLFCLHAFEQTHPFLGFEDLSCRAVKLAGGFPLSLKRLGSRFSGRKKDEWEVILFGYERSTVNGVINPEKNSLDGLYEYSSIMETFSSQPISSTTRSFEDLVGMNHRMQALSALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTARDESFLLASGVKYIFEVKGLRFDQALQLFYQFAFKQKSPP |
| superfamily: SSF52540 | 424-625 | SSF52540 | METFSSQPISSTTRSFEDLVGMNHRMQALSALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTARDESFLLASGVKYIFEVKGLRFDQALQLFYQFAFKQKSPPVRVLKKSR |
| superfamily: SSF52540 | 424-625 | SSF52540 | METFSSQPISSTTRSFEDLVGMNHRMQALSALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTARDESFLLASGVKYIFEVKGLRFDQALQLFYQFAFKQKSPPVRVLKKSR |
| Gene3D: G3DSA:3.40.50.300 | 436-578 | G3DSA:3.40.50.300 | TRSFEDLVGMNHRMQALSALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTAR |
| Gene3D: G3DSA:3.40.50.300 | 436-578 | G3DSA:3.40.50.300 | TRSFEDLVGMNHRMQALSALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTAR |
| HMMPfam: PF00931 IPR002182
|
454-614 | NB-ARC,NBS NB-ARC
|
ALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTARDESFLLASGVKYIFEVKGLRFDQALQLFYQFAFKQK |
| HMMPfam: PF00931 IPR002182
|
454-614 | NB-ARC,NBS NB-ARC
|
ALLELESDKEVRVVGIWGTGGIGKTTLSRYAYERISQQFHTHAFLENAQESSSSCLEERFLSKAIQREALAVRNSKDCPEIMKSLIQHRKVLLIVDDVDNVKTLEEVFKITSWLVPGSRVIVTARDESFLLASGVKYIFEVKGLRFDQALQLFYQFAFKQK |
| FPrintScan: PR00364 IPR000767
|
466-481 | DISEASERSIST Disease resistance protein
|
VVGIWGTGGIGKTTLS |
| FPrintScan: PR00364 IPR000767
|
466-481 | DISEASERSIST Disease resistance protein
|
VVGIWGTGGIGKTTLS |
| FPrintScan: PR00364 IPR000767
|
538-552 | DISEASERSIST Disease resistance protein
|
LIQHRKVLLIVDDVD |
| FPrintScan: PR00364 IPR000767
|
538-552 | DISEASERSIST Disease resistance protein
|
LIQHRKVLLIVDDVD |
List of Contributions
There has not been any contribution yet.
