PRGDB00061802 (putative disease resistance protein)

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putative disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 334183305 (NM_001198294)
Gene Class Unknown
Domain Type LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana putative disease resistance protein (RPP27) mRNA, complete cds.

DNA Sequence

ATGAAGACTAATTTTGTTATTCTACTTCTTCTCCTCTGTGTTTTTGCGATCAGCCCTAGTCAACAAGAAGAGATCAATCAACATAATCCAGGGATATATCATCAAAAGCTGCTATACAAGGTCCAACAATGGAGAACATCTTTGAAAGAATCAAATTCTGTAGAACTCAAGCTATCTTTAGCAGCCATTGTGGCTGGAGTGTTATACTTCCTTGCTGCCTTAATCTCGAGCGCATGTGGAATCGGCAGTGGAGGTTTATTCATTCCAATCACGACTCTAGTTTCACGGCTAGACTTGAAAACAGGGAAGCGTTTCTTGGGCCAATACTTGATATGGGTGATATTATTGTTGGGGCAGCTCCATGAATGCAAAAGCTGCATTGAGAAAGAAAGAGTAGCTTTGTTGGATTTTAAGAAATATTGGATGTCCATTACGCAAGAATCGGACTTGGACTATGTTTTCCCTACTTGGAATAATGACACAAAGAGCGATTGTTGCCAGTGGGAGAGCATTATGTGCAATCCTACAAGTGGGCGGCTTATCAGGCTTCACGTTGGTGCTTCGAATTTAAAAGAGAATTCTCTACTAAATATTTCTTTACTGCATCCCTTTGAAGAGGTTCGAAGTCTAGAATTATCAGCTGGGCTCAATGGCTTCGTTGATAATGTTGAAGGTTATAAAAGCTTAAGGAAATTAAAAAATTTGGAGATTCTGGATCTCTCTTATAATAATAGATTCAACAACAACATACTTCCATTTATTAATGCTGCTACGTCACTTACAAGCCTTTCTCTTCAAAATAACTCCATGGAAGGCCCTTTCCCTTTTGAAGAAATAAAAGACTTGACAAACTTGAAACTATTGGATCTTAGTAGAAACATACTAAAAGGCCCCATGCAAGGGTTGACTCATCTGAAAAAGCTAAAAGCTTTGGATCTAAGTAACAATGTTTTTTCGAGCATAATGGAATTGCAAGTAGTTTGTGAAATGAAGAATTTGTGGGAGCTTGATCTTCGTGAAAATAAATTTGTAGGTCAGCTTCCTCTTTGTTTAGGTAGATTAAACAAGCTAAGGGTTCTTGATTTGTCATCCAACCAGCTAAATGGAAATCTACCATCTACTTTCAACAGACTCGAGTCCCTTGAATATCTATCATTATTAGATAACAACTTCACCGGCTTCTTCTCATTTGATCCACTCGCCAACCTCACAAAGCTTAAGATGCCTGCTACAATAGTGCATGAGTTGCAGTTCTTGGATTTTTCAGTGAATGATATTAGTGGACTGCTCCCTGATAATATCGGTTATGCGCTTCCGAATCTGTTACGAATGAACGGCTCAAGAAATGGGTTTCAAGGGCATTTACCATCTTCTATGGGTGAGATGGTAAACATTACATCCCTTGATCTATCTTATAATAACTTCTCCGGGAAGCTACCTAGACGCTTTGTCACTGGTTGTTTTTCACTAAAACACTTGAAGCTCTCCCACAACAATTTTAGTGGCCATTTTCTTCCAAGAGAAACAAGCTTTACTTCCCTGGAAGAGTTGAGAGTTGATAGCAACTCATTCACTGGGAAGATCGGAGTTGGTTTGCTTAGCTCCAACACTACGTTATCAGTTCTTGACATGTCCAACAATTTTCTAACGGGTGATATTCCAAGCTGGATGTCTAACTTATCTGGTTTAACTATCTTGTCGATATCAAACAATTTTTTAGAAGGTACGATACCACCATCTTTGCTAGCCATTGGCTTTCTTTCTCTCATCGACCTATCGGGAAACTTATTATCTGGATCCTTACCGTCACGTGTTGGTGGGGAGTTTGGGATAAAATTGTTCCTACACGACAACATGCTCACGGGGCCGATTCCAGACACGTTGTTGGAAAAGGTCCAAATACTTGATTTACGGTACAATCAACTTTCTGGGAGTATTCCACAATTTGTCAATACCGAGAGCATATATATTCTTTTAATGAAGGGAAACAACTTAACAGGATCTATGTCAAGGCAGCTCTGTGATTTGAGAAATATCAGACTTTTAGATCTTTCAGATAACAAGCTCAATGGCTTCATACCTTCATGTCTATATAATTTATCATTTGGACCAGAGGATACAAATTCATATGTAGGTACAGCCATAACGAAGATTACTCCGTTCAAGTTTTACGAATCCACATTTGTGGTAGAGGATTTTGTGGTAATATCCTCTAGTTTTCAAGAAATTGAAATCAAATTTTCAATGAAGCGAAGGTATGATTCTTATTTTGGAGCAACTGAATTCAACAATGACGTACTTGATTATATGTATGGAATGGACCTATCAAGCAATGAGTTAAGTGGGGTTATCCCAGCAGAGCTTGGAAGTCTCTCAAAGCTACGAGTCATGAATTTATCTTGCAACTTCTTGTCCAGTTCAATACCATCTAGCTTCTCCAATCTCAAGGATATTGAGAGCCTTGACCTTTCGCATAACATGTTACAAGGAAGTATTCCTCAACAACTAACCAACCTTTCTTCTCTTGTTGTCTTTGATGTGTCTTACAATAATTTATCCGGAATCATTCCCCAAGGAAGGCAGTTTAATACCTTTGACGAGAAAAGCTACTTGGGAAATCCTCTTCTTTGTGGACCACCGACCAATAGAAGTTGTGATGCTAAGAAGACCTCAGATGAATCAGAAAATGGAGGAGAAGAAGAAGATGATGAAGCTCCTGTTGATATGTTGGCCTTCTATTTTAGTAGTGCTTCGACTTATGTAACTACATTGATAGGCATTTTTATACTTATGTGCTTTGATTGTCCTTTGCGTCGAGCATGGCTCCGCATTGTCGATGCTTCCATCGCCTCAGTCAAAAGTATGTTGCCTTAA


Protein sequences

Name Description Sequence
putative disease resistance protein putative disease resistance protein [Arabidopsis thaliana].

MKTNFVILLLLLCVFAISPSQQEEINQHNPGIYHQKLLYKVQQWRTSLKESNSVELKLSLAAIVAGVLYFLAALISSACGIGSGGLFIPITTLVSRLDLKTGKRFLGQYLIWVILLLGQLHECKSCIEKERVALLDFKKYWMSITQESDLDYVFPTWNNDTKSDCCQWESIMCNPTSGRLIRLHVGASNLKENSLLNISLLHPFEEVRSLELSAGLNGFVDNVEGYKSLRKLKNLEILDLSYNNRFNNNILPFINAATSLTSLSLQNNSMEGPFPFEEIKDLTNLKLLDLSRNILKGPMQGLTHLKKLKALDLSNNVFSSIMELQVVCEMKNLWELDLRENKFVGQLPLCLGRLNKLRVLDLSSNQLNGNLPSTFNRLESLEYLSLLDNNFTGFFSFDPLANLTKLKMPATIVHELQFLDFSVNDISGLLPDNIGYALPNLLRMNGSRNGFQGHLPSSMGEMVNITSLDLSYNNFSGKLPRRFVTGCFSLKHLKLSHNNFSGHFLPRETSFTSLEELRVDSNSFTGKIGVGLLSSNTTLSVLDMSNNFLTGDIPSWMSNLSGLTILSISNNFLEGTIPPSLLAIGFLSLIDLSGNLLSGSLPSRVGGEFGIKLFLHDNMLTGPIPDTLLEKVQILDLRYNQLSGSIPQFVNTESIYILLMKGNNLTGSMSRQLCDLRNIRLLDLSDNKLNGFIPSCLYNLSFGPEDTNSYVGTAITKITPFKFYESTFVVEDFVVISSSFQEIEIKFSMKRRYDSYFGATEFNNDVLDYMYGMDLSSNELSGVIPAELGSLSKLRVMNLSCNFLSSSIPSSFSNLKDIESLDLSHNMLQGSIPQQLTNLSSLVVFDVSYNNLSGIIPQGRQFNTFDEKSYLGNPLLCGPPTNRSCDAKKTSDESENGGEEEDDEAPVDMLAFYFSSASTYVTTLIGIFILMCFDCPLRRAWLRIVDASIASVKSMLP


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR24420
90-941 PTHR24420,FAMILY NOT NAMED

ITTLVSRLDLKTGKRFLGQYLIWVILLLGQLHECKSCIEKERVALLDFKKYWMSITQESDLDYVFPTWNNDTKSDCCQWESIMCNPTSGRLIRLHVGASNLKENSLLNISLLHPFEEVRSLELSAGLNGFVDNVEGYKSLRKLKNLEILDLSYNNRFNNNILPFINAATSLTSLSLQNNSMEGPFPFEEIKDLTNLKLLDLSRNILKGPMQGLTHLKKLKALDLSNNVFSSIMELQVVCEMKNLWELDLRENKFVGQLPLCLGRLNKLRVLDLSSNQLNGNLPSTFNRLESLEYLSLLDNNFTGFFSFDPLANLTKLKMPATIVHELQFLDFSVNDISGLLPDNIGYALPNLLRMNGSRNGFQGHLPSSMGEMVNITSLDLSYNNFSGKLPRRFVTGCFSLKHLKLSHNNFSGHFLPRETSFTSLEELRVDSNSFTGKIGVGLLSSNTTLSVLDMSNNFLTGDIPSWMSNLSGLTILSISNNFLEGTIPPSLLAIGFLSLIDLSGNLLSGSLPSRVGGEFGIKLFLHDNMLTGPIPDTLLEKVQILDLRYNQLSGSIPQFVNTESIYILLMKGNNLTGSMSRQLCDLRNIRLLDLSDNKLNGFIPSCLYNLSFGPEDTNSYVGTAITKITPFKFYESTFVVEDFVVISSSFQEIEIKFSMKRRYDSYFGATEFNNDVLDYMYGMDLSSNELSGVIPAELGSLSKLRVMNLSCNFLSSSIPSSFSNLKDIESLDLSHNMLQGSIPQQLTNLSSLVVFDVSYNNLSGIIPQGRQFNTFDEKSYLGNPLLCGPPTNRSCDAKKTSDESENGGEEEDDEAPVDMLAFYFSSASTYVTTLIGIFILMCFDCPLRRAW

HMMPanther: PTHR24420:SF914
90-941 PTHR24420:SF914

ITTLVSRLDLKTGKRFLGQYLIWVILLLGQLHECKSCIEKERVALLDFKKYWMSITQESDLDYVFPTWNNDTKSDCCQWESIMCNPTSGRLIRLHVGASNLKENSLLNISLLHPFEEVRSLELSAGLNGFVDNVEGYKSLRKLKNLEILDLSYNNRFNNNILPFINAATSLTSLSLQNNSMEGPFPFEEIKDLTNLKLLDLSRNILKGPMQGLTHLKKLKALDLSNNVFSSIMELQVVCEMKNLWELDLRENKFVGQLPLCLGRLNKLRVLDLSSNQLNGNLPSTFNRLESLEYLSLLDNNFTGFFSFDPLANLTKLKMPATIVHELQFLDFSVNDISGLLPDNIGYALPNLLRMNGSRNGFQGHLPSSMGEMVNITSLDLSYNNFSGKLPRRFVTGCFSLKHLKLSHNNFSGHFLPRETSFTSLEELRVDSNSFTGKIGVGLLSSNTTLSVLDMSNNFLTGDIPSWMSNLSGLTILSISNNFLEGTIPPSLLAIGFLSLIDLSGNLLSGSLPSRVGGEFGIKLFLHDNMLTGPIPDTLLEKVQILDLRYNQLSGSIPQFVNTESIYILLMKGNNLTGSMSRQLCDLRNIRLLDLSDNKLNGFIPSCLYNLSFGPEDTNSYVGTAITKITPFKFYESTFVVEDFVVISSSFQEIEIKFSMKRRYDSYFGATEFNNDVLDYMYGMDLSSNELSGVIPAELGSLSKLRVMNLSCNFLSSSIPSSFSNLKDIESLDLSHNMLQGSIPQQLTNLSSLVVFDVSYNNLSGIIPQGRQFNTFDEKSYLGNPLLCGPPTNRSCDAKKTSDESENGGEEEDDEAPVDMLAFYFSSASTYVTTLIGIFILMCFDCPLRRAW

superfamily: SSF52058
124-408 SSF52058,LRR

KSCIEKERVALLDFKKYWMSITQESDLDYVFPTWNNDTKSDCCQWESIMCNPTSGRLIRLHVGASNLKENSLLNISLLHPFEEVRSLELSAGLNGFVDNVEGYKSLRKLKNLEILDLSYNNRFNNNILPFINAATSLTSLSLQNNSMEGPFPFEEIKDLTNLKLLDLSRNILKGPMQGLTHLKKLKALDLSNNVFSSIMELQVVCEMKNLWELDLRENKFVGQLPLCLGRLNKLRVLDLSSNQLNGNLPSTFNRLESLEYLSLLDNNFTGFFSFDPLANLTKLKM

Gene3D: G3DSA:3.80.10.10
127-407 G3DSA:3.80.10.10

IEKERVALLDFKKYWMSITQESDLDYVFPTWNNDTKSDCCQWESIMCNPTSGRLIRLHVGASNLKENSLLNISLLHPFEEVRSLELSAGLNGFVDNVEGYKSLRKLKNLEILDLSYNNRFNNNILPFINAATSLTSLSLQNNSMEGPFPFEEIKDLTNLKLLDLSRNILKGPMQGLTHLKKLKALDLSNNVFSSIMELQVVCEMKNLWELDLRENKFVGQLPLCLGRLNKLRVLDLSSNQLNGNLPSTFNRLESLEYLSLLDNNFTGFFSFDPLANLTKLK

HMMPfam: PF08263
IPR013210
129-174 LRRNT_2
Leucine-rich repeat-containing N-terminal, type 2

KERVALLDFKKYWMSITQESDLDYVFPTWNNDTKSDCCQWESIMCN

ProfileScan: PS51450
IPR001611
234-255 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

NLEILDLSYNNRFNNNILPFIN

ProfileScan: PS51450
IPR001611
259-280 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

SLTSLSLQNNSMEGPFPFEEIK

ProfileScan: PS51450
IPR001611
284-306 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

NLKLLDLSRNILKGPMQGLTHLK

ProfileScan: PS51450
IPR001611
307-328 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

KLKALDLSNNVFSSIMELQVVC

HMMPfam: PF00560
IPR001611
356-377 LRR_1
Leucine-rich repeat

KLRVLDLSSNQLNGNLPSTFNR

ProfileScan: PS51450
IPR001611
356-378 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

KLRVLDLSSNQLNGNLPSTFNRL

FPrintScan: PR00019
357-370 LEURICHRPT,Leucine-rich repeat signature

LRVLDLSSNQLNGN

ProfileScan: PS51450
IPR001611
380-401 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

SLEYLSLLDNNFTGFFSFDPLA

superfamily: SSF52058
414-701 SSF52058,LRR

HELQFLDFSVNDISGLLPDNIGYALPNLLRMNGSRNGFQGHLPSSMGEMVNITSLDLSYNNFSGKLPRRFVTGCFSLKHLKLSHNNFSGHFLPRETSFTSLEELRVDSNSFTGKIGVGLLSSNTTLSVLDMSNNFLTGDIPSWMSNLSGLTILSISNNFLEGTIPPSLLAIGFLSLIDLSGNLLSGSLPSRVGGEFGIKLFLHDNMLTGPIPDTLLEKVQILDLRYNQLSGSIPQFVNTESIYILLMKGNNLTGSMSRQLCDLRNIRLLDLSDNKLNGFIPSCLYNLS

ProfileScan: PS51450
IPR001611
415-436 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

ELQFLDFSVNDISGLLPDNIGY

Gene3D: G3DSA:3.80.10.10
415-606 G3DSA:3.80.10.10

ELQFLDFSVNDISGLLPDNIGYALPNLLRMNGSRNGFQGHLPSSMGEMVNITSLDLSYNNFSGKLPRRFVTGCFSLKHLKLSHNNFSGHFLPRETSFTSLEELRVDSNSFTGKIGVGLLSSNTTLSVLDMSNNFLTGDIPSWMSNLSGLTILSISNNFLEGTIPPSLLAIGFLSLIDLSGNLLSGSLPSRVG

HMMPfam: PF00560
IPR001611
464-483 LRR_1
Leucine-rich repeat

NITSLDLSYNNFSGKLPRRF

ProfileScan: PS51450
IPR001611
464-485 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

NITSLDLSYNNFSGKLPRRFVT

ProfileScan: PS51450
IPR001611
489-512 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

SLKHLKLSHNNFSGHFLPRETSFT

ProfileScan: PS51450
IPR001611
538-560 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

TLSVLDMSNNFLTGDIPSWMSNL

HMMPfam: PF00560
IPR001611
539-560 LRR_1
Leucine-rich repeat

LSVLDMSNNFLTGDIPSWMSNL

ProfileScan: PS51450
IPR001611
562-583 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

GLTILSISNNFLEGTIPPSLLA

HMMPfam: PF00560
IPR001611
563-582 LRR_1
Leucine-rich repeat

LTILSISNNFLEGTIPPSLL

Gene3D: G3DSA:3.80.10.10
612-705 G3DSA:3.80.10.10

KLFLHDNMLTGPIPDTLLEKVQILDLRYNQLSGSIPQFVNTESIYILLMKGNNLTGSMSRQLCDLRNIRLLDLSDNKLNGFIPSCLYNLSFGPE

superfamily: SSF52058
613-885 SSF52058,LRR

LFLHDNMLTGPIPDTLLEKVQILDLRYNQLSGSIPQFVNTESIYILLMKGNNLTGSMSRQLCDLRNIRLLDLSDNKLNGFIPSCLYNLSFGPEDTNSYVGTAITKITPFKFYESTFVVEDFVVISSSFQEIEIKFSMKRRYDSYFGATEFNNDVLDYMYGMDLSSNELSGVIPAELGSLSKLRVMNLSCNFLSSSIPSSFSNLKDIESLDLSHNMLQGSIPQQLTNLSSLVVFDVSYNNLSGIIPQGRQFNTFDEKSYLGNPLLCGPPTNRSC

ProfileScan: PS51450
IPR001611
631-653 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

KVQILDLRYNQLSGSIPQFVNTE

HMMPfam: PF00560
IPR001611
632-649 LRR_1
Leucine-rich repeat

VQILDLRYNQLSGSIPQF

ProfileScan: PS51450
IPR001611
678-699 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

NIRLLDLSDNKLNGFIPSCLYN

Gene3D: G3DSA:3.80.10.10
773-881 G3DSA:3.80.10.10

MDLSSNELSGVIPAELGSLSKLRVMNLSCNFLSSSIPSSFSNLKDIESLDLSHNMLQGSIPQQLTNLSSLVVFDVSYNNLSGIIPQGRQFNTFDEKSYLGNPLLCGPPT

HMMPfam: PF13855
774-828 LRR_8,Leucine rich repeat

DLSSNELSGVIPAELGSLSKLRVMNLSCNFLSSSIPSSFSNLKDIESLDLSHNML

ProfileScan: PS51450
IPR001611
793-814 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

KLRVMNLSCNFLSSSIPSSFSN

FPrintScan: PR00019
815-828 LEURICHRPT,Leucine-rich repeat signature

LKDIESLDLSHNML

ProfileScan: PS51450
IPR001611
817-840 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

DIESLDLSHNMLQGSIPQQLTNLS

ProfileScan: PS51450
IPR001611
841-862 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

SLVVFDVSYNNLSGIIPQGRQF


List of References



List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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