PRGDB00061809 (NBS-LRR disease resistance protein)

From PRG Wiki
Jump to: navigation, search
NBS-LRR disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 320154509 (GU258508)
Gene Class Unknown
Domain Type LRR
Gene Species Oryza sativa Indica Group

Comment?

Oryza sativa Indica Group ecotype Podumoni Ahu NBS-LRR disease resistance protein (Pikh) gene, complete cds.

DNA Sequence

ATGAGTAAAATGAAGAAGCTTCAGTACCTAAATGTTCTCAACTGCTACTCACTCACAGCAATGCCTCTTGCGATGGGCCAACTTACAAATCTTCACACATTGCTTGGTTACTTTGTCCCCAACAATGGAAGTAGTGCGATGTCAGAGCTTCAATCACTGCCAGACCTCAATAGACTATCACTAGTGAACCTTGAAAAGGTTTCAGACACTGAAGATGCAAGAATGGCAAAACTTCAAGAGAAAGAAAAGCTCGAGACATTGATGTTGAGGTGGAATATGGATGCTGGAAATGCCAGTAGAATAGATCATGAAGTACTTGAAACCCTCCAACCTAGCCAGTGCCTGAAAACTTTGGAGATTGTTGCGTATGAAGGATATGTATTTCCATCTTGGATGACAAGAACCGAGCCATATCTTACATCTCTGGTTGAGATAAGACTAGTTAGTATGAGAGCATGTGAAAAGGCATTACCTCCACTTGGGATACTACCATGTCTGAAGATTGCAGAGATAAGTGGAGTTGATAATCTCAGTTCTATTGGTGATAATTTCTATGGTCATAACGGCACATTCCCTTCACTGGAGAAGCTGATTCTATCATACATGACAAGCCTTGAAGTCTGGGGACAGTCATCTAGGATGAATCTGTTTCCTCGTCTTGCAGAACTTGTCATCATTCAGTGCCCAAAATTGAGAGCACTGCATATGGAGTTTCCATCGATTGAAAAGTTGATTTTGTGGATGAATAACAAGATGTTGTACAGCTCGAAGGAAGGTATGAGAGGTGTAGAGAAGAGCCTCGAAAATCTTTCAATTTCTTTCTGTGAAGAGTTGCATGCTTCTTCAGGCTGTGGGGGTCTACAGGCTCTTGATCGCCTCAAGAAGTTGGAGATATGTGGTTGTCATGAATTATCATGCCTCCCACAGGGTTTGCAGCATCTTTCCTCTCTCACCAGCTTGAAAATTGATAACTGCAACAAATTGGAGATTTTGCCAGAATGGTTGGAGAACCTACCTTTTCTACAGATAATGTGTTTGTCTGGCTGTCCAATTCTGCACTCCATTCCTGAAGGCCTAACATGTAGCGACATTATTGTTGAAGATTGCCCCAATTTTAAAGAACCATCAGGTATGTCATCAGTGCTCTGTTCATGGAAAGCCATGTTTCTGATTTTCATTGAGCTATTCTTAAAGCAATTGAACTAG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Oryza sativa Indica Group].

MSKMKKLQYLNVLNCYSLTAMPLAMGQLTNLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAGNASRIDHEVLETLQPSQCLKTLEIVAYEGYVFPSWMTRTEPYLTSLVEIRLVSMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSYMTSLEVWGQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGMRGVEKSLENLSISFCEELHASSGCGGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEDCPNFKEPSGMSSVLCSWKAMFLIFIELFLKQLN

Domains

Domain Start-End Description Sequence

superfamily: SSF52058
1-201 SSF52058,LRR

MSKMKKLQYLNVLNCYSLTAMPLAMGQLTNLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAGNASRIDHEVLETLQPSQCLKTLEIVAYEGYVFPSWMTRTEPYLTSLVEIRLVSMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSY

HMMPanther: PTHR23155
1-393 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MSKMKKLQYLNVLNCYSLTAMPLAMGQLTNLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAGNASRIDHEVLETLQPSQCLKTLEIVAYEGYVFPSWMTRTEPYLTSLVEIRLVSMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSYMTSLEVWGQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGMRGVEKSLENLSISFCEELHASSGCGGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEDCPNFKEPSGMSSVLCSWKAMFLIFI

HMMPanther: PTHR23155:SF216
1-393 PTHR23155:SF216,OS11G0640600 PROTEIN

MSKMKKLQYLNVLNCYSLTAMPLAMGQLTNLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAGNASRIDHEVLETLQPSQCLKTLEIVAYEGYVFPSWMTRTEPYLTSLVEIRLVSMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSYMTSLEVWGQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGMRGVEKSLENLSISFCEELHASSGCGGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEDCPNFKEPSGMSSVLCSWKAMFLIFI

Gene3D: G3DSA:3.80.10.10
2-87 G3DSA:3.80.10.10

SKMKKLQYLNVLNCYSLTAMPLAMGQLTNLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETL

Gene3D: G3DSA:3.80.10.10
88-250 G3DSA:3.80.10.10

MLRWNMDAGNASRIDHEVLETLQPSQCLKTLEIVAYEGYVFPSWMTRTEPYLTSLVEIRLVSMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSYMTSLEVWGQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNN

superfamily: SSF52047
139-356 SSF52047,LRR

LTSLVEIRLVSMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSYMTSLEVWGQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGMRGVEKSLENLSISFCEELHASSGCGGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIP

Gene3D: G3DSA:3.80.10.10
256-356 G3DSA:3.80.10.10

SKEGMRGVEKSLENLSISFCEELHASSGCGGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIP






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox