PRGDB00061814 (NBS-LRR disease resistance protein)

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NBS-LRR disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 320154499 (GU258503)
Gene Class Unknown
Domain Type LRR
Gene Species Oryza rufipogon

Comment?

Oryza rufipogon seed accession number 106512 NBS-LRR disease resistance protein (Pikh) gene, complete cds.

DNA Sequence

ATGCCTCATGCAATGGGCCAACTTATAAATCTTCACACATTGCTTGGTTACTTTGTCCCCAACAATGGAAGTAGTGCGATGTCAGAGCTTCAATCACTGCCAGACCTCAATAGACTATCACTAGTGAACCTTGAAAAGGTTTCAGACACTGAAGATGCAAGAATGGCAAAACTTCAAGAGAAAGAAAAGCTCGAGACATTGATGTTGAGGTGGAATATGGATGCTGTAAATGCCAGTAGAATAGATTATGAAGTACTTGAAACCCTCCAACCTAGCCAGTGCCTGAAAACTTTGGAGATTGTTGCGTATGAAGGACATGTATTTCCATCTTGGATAACAAGCACTGAGCCATATCTCACATCTCTGGTTGAGATAAGGCTGGTTAATCTGAGATCATGTGAAAATGCTTTACCTCCACTTGGGCTACTGCCATGTCTGAAGATTGTGGAGATAAGCCGAGTTGATAATATCAGTTGTATTGACGATAATTTCTATGGTCACAACGGTACATTTCCTTCACTGGAGAAGCTGATTCTCTCATTCATGACTAGCCTTGAAGTCTGGGAACAGTCATCTAGGATGAATCTGTTTCCTCGTCTTGCAGAACTTGTCATCATTCAGTGCCCAAAATTGAGAGCACTGCATATGGAGTTTCCATCGATTGAAAAATTGATTTTGTGGATGAATAACAAGATGTTGTACAGCTCAAAGGAAGGTCTGAGAGGTGTAGAGAAGAGCCTCGAAAATCTTTCAATTTCTTTCTGTGAAGAGTTGCATGCTTCTTCAGGCTGTGAGGGTCTACAGGCTCTTGATCGCCTCAAGAAGTTGGAGATATGTGGTTGTCATGAATTGTCATGCCTCCCACAGGGTTTGCAGCATCTTTCCTCTCTCACCAGCTTGAAAATTGATAACTGCAACAAATTGGAGATTTTGCCAGAATGGTTGGAGAACCTACCTTTTCTACAGATAATGTGTTTGTCTGGCTGTCCAATTCTGCACTCCATTCCTGAAGGCCTGACATGTAGCGACATTATTGTTGAAGATTGCCCCAATTTTAAAGAACCATCAGGTAAATCATCAGTGCTCTGTTCATGGAAAGCCATGTTTCTGATTTTCATTGAGCTATTCTTAAAGCAATTGAACTAG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Oryza rufipogon].

MPHAMGQLINLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAVNASRIDYEVLETLQPSQCLKTLEIVAYEGHVFPSWITSTEPYLTSLVEIRLVNLRSCENALPPLGLLPCLKIVEISRVDNISCIDDNFYGHNGTFPSLEKLILSFMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEDCPNFKEPSGKSSVLCSWKAMFLIFIELFLKQLN

Domains

Domain Start-End Description Sequence

superfamily: SSF52058
1-230 SSF52058,LRR

MPHAMGQLINLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAVNASRIDYEVLETLQPSQCLKTLEIVAYEGHVFPSWITSTEPYLTSLVEIRLVNLRSCENALPPLGLLPCLKIVEISRVDNISCIDDNFYGHNGTFPSLEKLILSFMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNN

HMMPanther: PTHR23155
1-373 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MPHAMGQLINLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAVNASRIDYEVLETLQPSQCLKTLEIVAYEGHVFPSWITSTEPYLTSLVEIRLVNLRSCENALPPLGLLPCLKIVEISRVDNISCIDDNFYGHNGTFPSLEKLILSFMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEDCPNFKEPSGKSSVLCSWKAMFLIFI

HMMPanther: PTHR23155:SF216
1-373 PTHR23155:SF216,OS11G0640600 PROTEIN

MPHAMGQLINLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAVNASRIDYEVLETLQPSQCLKTLEIVAYEGHVFPSWITSTEPYLTSLVEIRLVNLRSCENALPPLGLLPCLKIVEISRVDNISCIDDNFYGHNGTFPSLEKLILSFMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEDCPNFKEPSGKSSVLCSWKAMFLIFI

Gene3D: G3DSA:3.80.10.10
53-217 G3DSA:3.80.10.10

ARMAKLQEKEKLETLMLRWNMDAVNASRIDYEVLETLQPSQCLKTLEIVAYEGHVFPSWITSTEPYLTSLVEIRLVNLRSCENALPPLGLLPCLKIVEISRVDNISCIDDNFYGHNGTFPSLEKLILSFMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHME

superfamily: SSF52047
159-336 SSF52047,LRR

CIDDNFYGHNGTFPSLEKLILSFMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIP

Gene3D: G3DSA:3.80.10.10
218-337 G3DSA:3.80.10.10

FPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPE






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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