PRGDB00061817 (NBS-LRR disease resistance protein)

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NBS-LRR disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 320154493 (GU258500)
Gene Class Unknown
Domain Type LRR
Gene Species Oryza rufipogon

Comment?

Oryza rufipogon seed accession number 106507 NBS-LRR disease resistance protein (Pikh) gene, complete cds.

DNA Sequence

ATGGCAAAACTTCAAGAGAAAGAAAAGGTCGAGACATTGATGTTGAGGTGGAATATGGATGCTGGAAATGCCAGTAGAATAGATCATGAAGTACTTGAAACCCTCCAACCTAACCAGTGCCTGAAAACTTTGGAGATTGTTGCGTATGAAGGACATGCATTTCCATCTTGGATAACAAGCACTGAGCCATATCTCACATCTCTGGTTGAGATAAGGTTGGTTAATCTGAGATCATGTGAAAATGCTTTACCTCCACTTGGGCTACTGCCATGTCTGAAGATTGTGGAGATAAGCCGAGTTTTTTTTTTTTTTTGCGAGGAAGTGGAGATAAGCCGAGTTGAGAATATCAGTTGTATTGACGATAATTTCTATGGTCAGAACGGTACATTTCCTTCATTGGAGAAGCTGATTCTCTCATTCATGACTAGCCTTGAAGTCTGGGAACAGTCATCTAGGATGAATCTGTTTCCTCGTCTTGCAGAACTTGTCATCATTCAGTGCCCAAAATTGAGAGCACTGCATATGGAGTTTCCATCGATTGAAAAATTGATTTTGTGGATGAATAATAAGATGTTGTACAGCTCGAAGGAAGGTCTGAGAGGTGTAGAGAAGAGCCTCGAAAATCTTTCAATTTCTTTCTGTGAAGAGTTGCATGCTTCTTCAGGCTGTGAGGGTCTACAGGCTCTTGATCGCCTCAAGAAGTTGGAGATATGTGGTTGTCATGAATTGTCATGCCTCCCACAGGGTTTGCAGCATCTTTCCTCTCTCGCCAGCTTGAAAATTGATAACTGCAACAAATTGGAGATTTTGCCAGAATGGTTGGAGAACCTACCTTTTCTACAGATAATGTGTTTGTCTGGCTGTCCAATTCTGCACTCCATTCCTGAAGGCCTAACATGTAGCGACATTATTGTTGAATATTGCCCCAATTTTAAAGAACCATCAGGTATGTCATCAGTGCTCTGTTCATGGAAAGCCATATTTCTGATTTTCATTGAGCTATTCTTAAAGCAATTGAACTAG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Oryza rufipogon].

MAKLQEKEKVETLMLRWNMDAGNASRIDHEVLETLQPNQCLKTLEIVAYEGHAFPSWITSTEPYLTSLVEIRLVNLRSCENALPPLGLLPCLKIVEISRVFFFFCEEVEISRVENISCIDDNFYGQNGTFPSLEKLILSFMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLASLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEYCPNFKEPSGMSSVLCSWKAIFLIFIELFLKQLN

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
33-332 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

ETLQPNQCLKTLEIVAYEGHAFPSWITSTEPYLTSLVEIRLVNLRSCENALPPLGLLPCLKIVEISRVFFFFCEEVEISRVENISCIDDNFYGQNGTFPSLEKLILSFMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLASLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEYCPNFKEPSGMSSVLCSWKAIFLIFI

HMMPanther: PTHR23155:SF216
33-332 PTHR23155:SF216,OS11G0640600 PROTEIN

ETLQPNQCLKTLEIVAYEGHAFPSWITSTEPYLTSLVEIRLVNLRSCENALPPLGLLPCLKIVEISRVFFFFCEEVEISRVENISCIDDNFYGQNGTFPSLEKLILSFMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLASLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEYCPNFKEPSGMSSVLCSWKAIFLIFI

superfamily: SSF52047
57-295 SSF52047,LRR

WITSTEPYLTSLVEIRLVNLRSCENALPPLGLLPCLKIVEISRVFFFFCEEVEISRVENISCIDDNFYGQNGTFPSLEKLILSFMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLASLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIP

Gene3D: G3DSA:3.80.10.10
127-297 G3DSA:3.80.10.10

NGTFPSLEKLILSFMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLASLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEG






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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