PRGDB00061818 (NBS-LRR disease resistance protein)

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NBS-LRR disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 320154491 (GU258499)
Gene Class Unknown
Domain Type LRR
Gene Species Oryza sativa

Comment?

Oryza sativa ecotype Bizor-II NBS-LRR disease resistance protein (Pikh) gene, complete cds.

DNA Sequence

ATGAGTAAAATGAAGAAGCTTCAGTACCTAAATGTTCTCAACTGCTACTCACTCACAGCAATGCCTCTTGCGATGGGCCAACTTACAAATCTTCACACATTGCTTGGTTACTTTGTCCCCAACAATGGAAGTAGTGCGATGTCAGAGCTTCAATCACTGCCAGACCTCAATAGACTATCACTAGTGAACCTTGAAAAGGTTTCAGACACTGAAGATGCAAGAATGGCAAAACTTCAAGAGAAAGAAAAGCTCGAGACATTGATGTTGAGGTGGAATATGGATGCTGGAAATGCCAGTAGAATAGATCATGAAGTACTTGAAACCCTCCAACCTAGCCAGTGCCTGAAAACTTTGGAGATTGTTGCGTATGAAGGATATGTATTTCCATCTTGGATGACAAGAACCGAGCCATATCTTACATCTCTGGTTGAGATAAGACTAGTTAATATGAGAGCATGTGAAAAGGCATTACCTCCACTTGGGATACTACCATGTCTGAAGATTGCAGAGATAAGTGGAGTTGATAATCTCAGTTCTATTGGTGATAATTTCTATGGTCATAACGGCACATTCCCTTCACTGGAGAAGCTGATTCTATCATACATGACAAGCCTTGAAGTCTGGGAACAGTCATCTAGGATGAATCTGTTTCCTCGTCTTGCAGAACTTGTCATCATTCAGTGCCCAAAATTGAGAGCACTGCATATGGAGTTTCCATCGATTGAAAAGTTGATTTTGTGGATGAATAACAAGATGTTGTACAGCTCGAAGGAAGGTATGAGAGGTGTAGAGAAGAGCCTCGAAAATCTTTCAATTTCTTTCTGTGAAGAGTTGCATGCTTCTTCAGGCTGTGAGGGTCTACAGGCTCTTGATCGCCTCAAGAAGTTGGAGATATGTGGTTGTCATGAATTATCATGCCTCCCACAGGGTTTGCAGCATCTTTCCTCTCTCACCAGCTTGAAAATTGATAACTGCAACAAATTGGAGATTTTGCCAGAATGGTTGGAGAACCTACCTTTTCTACAGATAATGTGTTTGTCTGGCTGTCCAATTCTGCACTCCATTCCTGAAGGCCTAACATGTAGCGACATTATTGTTGAAGATTGCCCCAATTTTAAAGAACCATCAGGTATGTCATCAGTGCTCTGTTCATGGAAAGCCATGTTTCTGATTTTCATTGAGCTATTCTTAAAGCAATTGAACTAG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Oryza sativa].

MSKMKKLQYLNVLNCYSLTAMPLAMGQLTNLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAGNASRIDHEVLETLQPSQCLKTLEIVAYEGYVFPSWMTRTEPYLTSLVEIRLVNMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSYMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGMRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEDCPNFKEPSGMSSVLCSWKAMFLIFIELFLKQLN

Domains

Domain Start-End Description Sequence

superfamily: SSF52058
1-201 SSF52058,LRR

MSKMKKLQYLNVLNCYSLTAMPLAMGQLTNLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAGNASRIDHEVLETLQPSQCLKTLEIVAYEGYVFPSWMTRTEPYLTSLVEIRLVNMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSY

HMMPanther: PTHR23155
1-393 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MSKMKKLQYLNVLNCYSLTAMPLAMGQLTNLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAGNASRIDHEVLETLQPSQCLKTLEIVAYEGYVFPSWMTRTEPYLTSLVEIRLVNMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSYMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGMRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEDCPNFKEPSGMSSVLCSWKAMFLIFI

HMMPanther: PTHR23155:SF216
1-393 PTHR23155:SF216,OS11G0640600 PROTEIN

MSKMKKLQYLNVLNCYSLTAMPLAMGQLTNLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLETLMLRWNMDAGNASRIDHEVLETLQPSQCLKTLEIVAYEGYVFPSWMTRTEPYLTSLVEIRLVNMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSYMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGMRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEDCPNFKEPSGMSSVLCSWKAMFLIFI

Gene3D: G3DSA:3.80.10.10
2-86 G3DSA:3.80.10.10

SKMKKLQYLNVLNCYSLTAMPLAMGQLTNLHTLLGYFVPNNGSSAMSELQSLPDLNRLSLVNLEKVSDTEDARMAKLQEKEKLET

Gene3D: G3DSA:3.80.10.10
87-238 G3DSA:3.80.10.10

LMLRWNMDAGNASRIDHEVLETLQPSQCLKTLEIVAYEGYVFPSWMTRTEPYLTSLVEIRLVNMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSYMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEF

superfamily: SSF52047
139-356 SSF52047,LRR

LTSLVEIRLVNMRACEKALPPLGILPCLKIAEISGVDNLSSIGDNFYGHNGTFPSLEKLILSYMTSLEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGMRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIP

Gene3D: G3DSA:3.80.10.10
239-357 G3DSA:3.80.10.10

PSIEKLILWMNNKMLYSSKEGMRGVEKSLENLSISFCEELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLTSLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPE






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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