PRGDB00061835 (disease resistance protein RPP8)

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disease resistance protein RPP8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464740 (GU646335)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype PC-4 disease resistance protein RPP8 (RPP8) gene, RPP8-4 allele, partial cds.

DNA Sequence

GTAAAGTTTGAAGGTGGGAAGTTACCTTCTAGCATTGGAGGGCTCATCCACTTGAGATTCTTGAGCTTATACGACGCTGAGGTATCTCATCTACCTTCTAGTATGGGGAATCTAAAGCTTCTGCTCTATTTGAGCTTATGTGTTGCTGCCAAGGAACCAGTTCATGTGCCAAATGTTTTGAAAGAGATGCTAGAGTTGAGAAACCTTTTCCTACCTTCGTTAATGCATGATAAAACCAAGTTGGATTTGGGTGATCTAGTGAACCTAGAGGAGTTGTGGTATTTCTCAACGCAACACAGTAGTGTGACAGACCTCCTCCGAATAACCAAGCTCAGGTCTCTCTCTGTATCTTTGAGCGAAAGGGTTACTTTTGAAACCCAATCGTCATCTCTCCGTCAATTGCGTAACCTCGAGACGCTTCATTTGGATTTTCGGTACAAAACCTATACGGTTGATTATGTGGGAGAGTTGGATCTGGATTTTATTCATCTAAAAGAGTTAGGATTGACAGTACATATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCACCTTGAACACATATCTCTATTTTATTGCCGCATGGAGGAGGATCCAATGCCGACTCTAGAAAAGTTGCTTCATTTGAAGTCGGTTTTATTAGATACTGACGCTTTCGTTGGGAGGAGAATGGTGTGCTCAAAAGGCGGATTTCCTCAATTATGTGCTCTAGAAATATCTGAAGAATCAGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCG


Protein sequences

Name Description Sequence
disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VKFEGGKLPSSIGGLIHLRFLSLYDAEVSHLPSSMGNLKLLLYLSLCVAAKEPVHVPNVLKEMLELRNLFLPSLMHDKTKLDLGDLVNLEELWYFSTQHSSVTDLLRITKLRSLSVSLSERVTFETQSSSLRQLRNLETLHLDFRYKTYTVDYVGELDLDFIHLKELGLTVHMSKIPDQHQFPPHLEHISLFYCRMEEDPMPTLEKLLHLKSVLLDTDAFVGRRMVCSKGGFPQLCALEISEESELEEWIVEEGS

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF231
1-255 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VKFEGGKLPSSIGGLIHLRFLSLYDAEVSHLPSSMGNLKLLLYLSLCVAAKEPVHVPNVLKEMLELRNLFLPSLMHDKTKLDLGDLVNLEELWYFSTQHSSVTDLLRITKLRSLSVSLSERVTFETQSSSLRQLRNLETLHLDFRYKTYTVDYVGELDLDFIHLKELGLTVHMSKIPDQHQFPPHLEHISLFYCRMEEDPMPTLEKLLHLKSVLLDTDAFVGRRMVCSKGGFPQLCALEISEESELEEWIVEEGS

HMMPanther: PTHR23155
1-255 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VKFEGGKLPSSIGGLIHLRFLSLYDAEVSHLPSSMGNLKLLLYLSLCVAAKEPVHVPNVLKEMLELRNLFLPSLMHDKTKLDLGDLVNLEELWYFSTQHSSVTDLLRITKLRSLSVSLSERVTFETQSSSLRQLRNLETLHLDFRYKTYTVDYVGELDLDFIHLKELGLTVHMSKIPDQHQFPPHLEHISLFYCRMEEDPMPTLEKLLHLKSVLLDTDAFVGRRMVCSKGGFPQLCALEISEESELEEWIVEEGS

superfamily: SSF52058
2-242 SSF52058,LRR

KFEGGKLPSSIGGLIHLRFLSLYDAEVSHLPSSMGNLKLLLYLSLCVAAKEPVHVPNVLKEMLELRNLFLPSLMHDKTKLDLGDLVNLEELWYFSTQHSSVTDLLRITKLRSLSVSLSERVTFETQSSSLRQLRNLETLHLDFRYKTYTVDYVGELDLDFIHLKELGLTVHMSKIPDQHQFPPHLEHISLFYCRMEEDPMPTLEKLLHLKSVLLDTDAFVGRRMVCSKGGFPQLCALEISE

Gene3D: G3DSA:3.80.10.10
8-217 G3DSA:3.80.10.10

LPSSIGGLIHLRFLSLYDAEVSHLPSSMGNLKLLLYLSLCVAAKEPVHVPNVLKEMLELRNLFLPSLMHDKTKLDLGDLVNLEELWYFSTQHSSVTDLLRITKLRSLSVSLSERVTFETQSSSLRQLRNLETLHLDFRYKTYTVDYVGELDLDFIHLKELGLTVHMSKIPDQHQFPPHLEHISLFYCRMEEDPMPTLEKLLHLKSVLLDT






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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