PRGDB00061836 (disease resistance protein RPP8)

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disease resistance protein RPP8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464738 (GU646334)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype PC-4 disease resistance protein RPP8 (RPP8) gene, RPP8-3 allele, partial cds.

DNA Sequence

GTGAAGTTTGAAGGAGGGAAGTTACCTTCTAGCATTGGAGGGCTCATCCACTTGAGATTCTTGTGCTTACGCAAGGCTGGGGTATCTCATCTACCTTCTTCTATGCGGAATTTAAAGCTTCTGCTCTATTTGAACTTAAGTGTTGCTATTGGGGAACCAGTTCATGTGCCAAATGTTTTGAAAGAGATGATAGAGTTGAGGTACCTTTTCCTACCTTTGTTTATGCATGATAAAACCAAGTTGGAATTGGGTGATCTAGTGAACCTGGAGCACTTCTGGTTTTTCTCAAAGCAACACAGTAGTGTGACAAACCTCCTCCGTATGACCAAGCTCAGGGGTCTCTCTGTAACTTTATCCAAAAGGTATACTTTTGAAGCCCTATCTTCATCTCTCCGTCAATTGGGTAACCTCGAGATGCTTTATTTGGATTGTTCGTACAAAATCTATTTGGGAGAGTTGGATCTGGATTTTATTCATCTAAAAGAGTTGGATCTGGATTTTATTCATCTAAAAGAGTTAGGATTGGGAGTACGTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCACCTTGAACACATAGATCTATTTTATTGCGGCATTGAGGAGGATCCAATGCCGACTCTAGAAAGGTTGCTTTATTTGAAGTCGGTTTCATTACGATCTGACGCTTTCGTTGGGAGGAAAATGGTGTGCTCAAAAGGCGGATTTCCTCAATTACGTGCTCTAAAAATATATAAAGAATCTGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCG


Protein sequences

Name Description Sequence
disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VKFEGGKLPSSIGGLIHLRFLCLRKAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRYLFLPLFMHDKTKLELGDLVNLEHFWFFSKQHSSVTNLLRMTKLRGLSVTLSKRYTFEALSSSLRQLGNLEMLYLDCSYKIYLGELDLDFIHLKELDLDFIHLKELGLGVRMSKIPDQHQFPPHLEHIDLFYCGIEEDPMPTLERLLYLKSVSLRSDAFVGRKMVCSKGGFPQLRALKIYKESELEEWIVEEGS

disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VKFEGGKLPSSIGGLIHLRFLCLRKAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRYLFLPLFMHDKTKLELGDLVNLEHFWFFSKQHSSVTNLLRMTKLRGLSVTLSKRYTFEALSSSLRQLGNLEMLYLDCSYKIYLGELDLDFIHLKELDLDFIHLKELGLGVRMSKIPDQHQFPPHLEHIDLFYCGIEEDPMPTLERLLYLKSVSLRSDAFVGRKMVCSKGGFPQLRALKIYKESELEEWIVEEGS

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF231
1-261 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VKFEGGKLPSSIGGLIHLRFLCLRKAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRYLFLPLFMHDKTKLELGDLVNLEHFWFFSKQHSSVTNLLRMTKLRGLSVTLSKRYTFEALSSSLRQLGNLEMLYLDCSYKIYLGELDLDFIHLKELDLDFIHLKELGLGVRMSKIPDQHQFPPHLEHIDLFYCGIEEDPMPTLERLLYLKSVSLRSDAFVGRKMVCSKGGFPQLRALKIYKESELEEWIVEEGS

HMMPanther: PTHR23155
1-261 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VKFEGGKLPSSIGGLIHLRFLCLRKAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRYLFLPLFMHDKTKLELGDLVNLEHFWFFSKQHSSVTNLLRMTKLRGLSVTLSKRYTFEALSSSLRQLGNLEMLYLDCSYKIYLGELDLDFIHLKELDLDFIHLKELGLGVRMSKIPDQHQFPPHLEHIDLFYCGIEEDPMPTLERLLYLKSVSLRSDAFVGRKMVCSKGGFPQLRALKIYKESELEEWIVEEGS

HMMPanther: PTHR23155:SF231
1-261 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VKFEGGKLPSSIGGLIHLRFLCLRKAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRYLFLPLFMHDKTKLELGDLVNLEHFWFFSKQHSSVTNLLRMTKLRGLSVTLSKRYTFEALSSSLRQLGNLEMLYLDCSYKIYLGELDLDFIHLKELDLDFIHLKELGLGVRMSKIPDQHQFPPHLEHIDLFYCGIEEDPMPTLERLLYLKSVSLRSDAFVGRKMVCSKGGFPQLRALKIYKESELEEWIVEEGS

HMMPanther: PTHR23155
1-261 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VKFEGGKLPSSIGGLIHLRFLCLRKAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRYLFLPLFMHDKTKLELGDLVNLEHFWFFSKQHSSVTNLLRMTKLRGLSVTLSKRYTFEALSSSLRQLGNLEMLYLDCSYKIYLGELDLDFIHLKELDLDFIHLKELGLGVRMSKIPDQHQFPPHLEHIDLFYCGIEEDPMPTLERLLYLKSVSLRSDAFVGRKMVCSKGGFPQLRALKIYKESELEEWIVEEGS

superfamily: SSF52058
2-256 SSF52058,LRR

KFEGGKLPSSIGGLIHLRFLCLRKAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRYLFLPLFMHDKTKLELGDLVNLEHFWFFSKQHSSVTNLLRMTKLRGLSVTLSKRYTFEALSSSLRQLGNLEMLYLDCSYKIYLGELDLDFIHLKELDLDFIHLKELGLGVRMSKIPDQHQFPPHLEHIDLFYCGIEEDPMPTLERLLYLKSVSLRSDAFVGRKMVCSKGGFPQLRALKIYKESELEEWI

superfamily: SSF52058
2-256 SSF52058,LRR

KFEGGKLPSSIGGLIHLRFLCLRKAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRYLFLPLFMHDKTKLELGDLVNLEHFWFFSKQHSSVTNLLRMTKLRGLSVTLSKRYTFEALSSSLRQLGNLEMLYLDCSYKIYLGELDLDFIHLKELDLDFIHLKELGLGVRMSKIPDQHQFPPHLEHIDLFYCGIEEDPMPTLERLLYLKSVSLRSDAFVGRKMVCSKGGFPQLRALKIYKESELEEWI

Gene3D: G3DSA:3.80.10.10
6-246 G3DSA:3.80.10.10

GKLPSSIGGLIHLRFLCLRKAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRYLFLPLFMHDKTKLELGDLVNLEHFWFFSKQHSSVTNLLRMTKLRGLSVTLSKRYTFEALSSSLRQLGNLEMLYLDCSYKIYLGELDLDFIHLKELDLDFIHLKELGLGVRMSKIPDQHQFPPHLEHIDLFYCGIEEDPMPTLERLLYLKSVSLRSDAFVGRKMVCSKGGFPQLRALKI

Gene3D: G3DSA:3.80.10.10
6-246 G3DSA:3.80.10.10

GKLPSSIGGLIHLRFLCLRKAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRYLFLPLFMHDKTKLELGDLVNLEHFWFFSKQHSSVTNLLRMTKLRGLSVTLSKRYTFEALSSSLRQLGNLEMLYLDCSYKIYLGELDLDFIHLKELDLDFIHLKELGLGVRMSKIPDQHQFPPHLEHIDLFYCGIEEDPMPTLERLLYLKSVSLRSDAFVGRKMVCSKGGFPQLRALKI






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