PRGDB00061840 (disease resistance protein RPP8)

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disease resistance protein RPP8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464728 (GU646328)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype P71-1 disease resistance protein RPP8 (RPP8) gene, RPP8-2 allele, partial cds.

DNA Sequence

GTGAAGTTTGAAGGAGGGAAGTTACCTTCTAGCATCGGAGGGCTCATCCACTTGAGATTCTTGAGCTTAGACGATGCTGGGGTATCTCATCTACCTTCTTCTATGCGGAATTTAAAGCTTCTGCTCTATTTGAACTTAAGTGTTGCTATTGGGGAACCAGTTCATGTGCCAAATGTTTTGAAAGAGATGCTAGAGTTGAGGTACCTTTTCCTACCTTGGTTTAAGCATGATAAAACCAAGTTGGAATTGGGTGATCTAGTGAACCTGGAGCACTTGTGGAGTTTCTCAACGCAACACAGTAGTGTGACAGACCTCCTCCGTATGACCAAGCTCAGGCATCTCTCTGTATCTTTGAGCGAAAGGTGTACTTTTGAAACCCTATCGTCATCTCTCCGTCAATTGCGTAACCTTGAGACGCTTTATTTGGATTTTTCGCCCAAAACCAATTACGTGGGAGAGTTGGTTCTGGATTTTATTCATCTAAAAGAGTTAGTATTGACAGTACGTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCACCTTGAACACATATCTCTATTTAATTGCGGCGTGGAGGAGGATCCAATGCCGATTCTAGAAAAGTTGCTTCATTTGAAGTCGGTTAAATTAACATTTGAGGCTTTCGTTGGGAGGAAAATGGTGTGCTCAAAAGGCGGATTTCCTCAATTACGTGCTCTAAAAATATATAAACACTCAGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCG


Protein sequences

Name Description Sequence
disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VKFEGGKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRHLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGVEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFPQLRALKIYKHSELEEWIVEEGS

disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VKFEGGKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRHLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGVEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFPQLRALKIYKHSELEEWIVEEGS

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF231
1-252 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VKFEGGKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRHLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGVEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFPQLRALKIYKHSELEEWIVEEGS

HMMPanther: PTHR23155
1-252 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VKFEGGKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRHLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGVEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFPQLRALKIYKHSELEEWIVEEGS

HMMPanther: PTHR23155:SF231
1-252 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VKFEGGKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRHLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGVEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFPQLRALKIYKHSELEEWIVEEGS

HMMPanther: PTHR23155
1-252 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VKFEGGKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRHLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGVEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFPQLRALKIYKHSELEEWIVEEGS

superfamily: SSF52058
2-239 SSF52058,LRR

KFEGGKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRHLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGVEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFPQLRALKIYK

superfamily: SSF52058
2-239 SSF52058,LRR

KFEGGKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRHLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGVEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFPQLRALKIYK

Gene3D: G3DSA:3.80.10.10
6-237 G3DSA:3.80.10.10

GKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRHLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGVEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFPQLRALKI

Gene3D: G3DSA:3.80.10.10
6-237 G3DSA:3.80.10.10

GKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRHLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGVEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFPQLRALKI






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Analyses

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