PRGDB00061841 (disease resistance protein RPP8)

From PRG Wiki
Jump to: navigation, search
disease resistance protein RPP8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464726 (GU646327)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype P71-1 disease resistance protein RPP8 (RPP8) gene, RPP8-1 allele, partial cds.

DNA Sequence

GTGAAGTTTGAAGGAGGGAAGTTACCTTCTAGCATTGGAGGGCTTATCCACTTGAGATTCTTGAGCTTATACGACGCTAAGGTATCTCATCTACCTTCTAGTATAGGGAATTTAAAGCTTCTGCTCTATTTGAACTTACGTGTTGCTATTGGGGAACCAGTTCATGTGCCAAATGTTTTGAAAGAGATGCTAGAGTTGAGGTACCTTTGCCTACCTTGGTTTATGCATGATAAAACCAAGTTGGAATTGGGTGATCTAGTGAACCTGGAGCACTTGTGGTATTTCTCAACGCAACACAGTAGTGTGACAGACCTCCTCCGTATGACCAAGCTCAGGGGTCTCTCTGTATCTTTGAGCGAGAGGTATACTTTTGAAGCCCTATTGTCATCTCTCCGTCAATTGCGTAACCTCGAGACGCTTTATTTGGATTTTCGGTACAAAACCTATACGGTTGATTATGTGGGAGAGTTGGATCTGGATTTTATTCATCTAAAAGAGTTAGGATTGACAGTACGTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCACCTTGAACACATATATCTATATTATTGCGGCATTGAGGAGGATCCAATGCCGATTCTAGAAAAGTTGCTTCATTTGAAGTCGGTTGAATTAAGCTCTGAGGCTTTCCTTGGGAGGAGAATGTTGTGCTCAAAAGGTGGATTTCCTCAATTATGTGCTCTAGAAATATCTGAAGAATTAGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCG


Protein sequences

Name Description Sequence
disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VKFEGGKLPSSIGGLIHLRFLSLYDAKVSHLPSSIGNLKLLLYLNLRVAIGEPVHVPNVLKEMLELRYLCLPWFMHDKTKLELGDLVNLEHLWYFSTQHSSVTDLLRMTKLRGLSVSLSERYTFEALLSSLRQLRNLETLYLDFRYKTYTVDYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHIYLYYCGIEEDPMPILEKLLHLKSVELSSEAFLGRRMLCSKGGFPQLCALEISEELELEEWIVEEGS

disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VKFEGGKLPSSIGGLIHLRFLSLYDAKVSHLPSSIGNLKLLLYLNLRVAIGEPVHVPNVLKEMLELRYLCLPWFMHDKTKLELGDLVNLEHLWYFSTQHSSVTDLLRMTKLRGLSVSLSERYTFEALLSSLRQLRNLETLYLDFRYKTYTVDYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHIYLYYCGIEEDPMPILEKLLHLKSVELSSEAFLGRRMLCSKGGFPQLCALEISEELELEEWIVEEGS

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF231
1-255 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VKFEGGKLPSSIGGLIHLRFLSLYDAKVSHLPSSIGNLKLLLYLNLRVAIGEPVHVPNVLKEMLELRYLCLPWFMHDKTKLELGDLVNLEHLWYFSTQHSSVTDLLRMTKLRGLSVSLSERYTFEALLSSLRQLRNLETLYLDFRYKTYTVDYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHIYLYYCGIEEDPMPILEKLLHLKSVELSSEAFLGRRMLCSKGGFPQLCALEISEELELEEWIVEEGS

HMMPanther: PTHR23155
1-255 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VKFEGGKLPSSIGGLIHLRFLSLYDAKVSHLPSSIGNLKLLLYLNLRVAIGEPVHVPNVLKEMLELRYLCLPWFMHDKTKLELGDLVNLEHLWYFSTQHSSVTDLLRMTKLRGLSVSLSERYTFEALLSSLRQLRNLETLYLDFRYKTYTVDYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHIYLYYCGIEEDPMPILEKLLHLKSVELSSEAFLGRRMLCSKGGFPQLCALEISEELELEEWIVEEGS

HMMPanther: PTHR23155:SF231
1-255 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VKFEGGKLPSSIGGLIHLRFLSLYDAKVSHLPSSIGNLKLLLYLNLRVAIGEPVHVPNVLKEMLELRYLCLPWFMHDKTKLELGDLVNLEHLWYFSTQHSSVTDLLRMTKLRGLSVSLSERYTFEALLSSLRQLRNLETLYLDFRYKTYTVDYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHIYLYYCGIEEDPMPILEKLLHLKSVELSSEAFLGRRMLCSKGGFPQLCALEISEELELEEWIVEEGS

HMMPanther: PTHR23155
1-255 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VKFEGGKLPSSIGGLIHLRFLSLYDAKVSHLPSSIGNLKLLLYLNLRVAIGEPVHVPNVLKEMLELRYLCLPWFMHDKTKLELGDLVNLEHLWYFSTQHSSVTDLLRMTKLRGLSVSLSERYTFEALLSSLRQLRNLETLYLDFRYKTYTVDYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHIYLYYCGIEEDPMPILEKLLHLKSVELSSEAFLGRRMLCSKGGFPQLCALEISEELELEEWIVEEGS

superfamily: SSF52058
2-242 SSF52058,LRR

KFEGGKLPSSIGGLIHLRFLSLYDAKVSHLPSSIGNLKLLLYLNLRVAIGEPVHVPNVLKEMLELRYLCLPWFMHDKTKLELGDLVNLEHLWYFSTQHSSVTDLLRMTKLRGLSVSLSERYTFEALLSSLRQLRNLETLYLDFRYKTYTVDYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHIYLYYCGIEEDPMPILEKLLHLKSVELSSEAFLGRRMLCSKGGFPQLCALEISE

superfamily: SSF52058
2-242 SSF52058,LRR

KFEGGKLPSSIGGLIHLRFLSLYDAKVSHLPSSIGNLKLLLYLNLRVAIGEPVHVPNVLKEMLELRYLCLPWFMHDKTKLELGDLVNLEHLWYFSTQHSSVTDLLRMTKLRGLSVSLSERYTFEALLSSLRQLRNLETLYLDFRYKTYTVDYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHIYLYYCGIEEDPMPILEKLLHLKSVELSSEAFLGRRMLCSKGGFPQLCALEISE

Gene3D: G3DSA:3.80.10.10
8-220 G3DSA:3.80.10.10

LPSSIGGLIHLRFLSLYDAKVSHLPSSIGNLKLLLYLNLRVAIGEPVHVPNVLKEMLELRYLCLPWFMHDKTKLELGDLVNLEHLWYFSTQHSSVTDLLRMTKLRGLSVSLSERYTFEALLSSLRQLRNLETLYLDFRYKTYTVDYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHIYLYYCGIEEDPMPILEKLLHLKSVELSSEAF

Gene3D: G3DSA:3.80.10.10
8-220 G3DSA:3.80.10.10

LPSSIGGLIHLRFLSLYDAKVSHLPSSIGNLKLLLYLNLRVAIGEPVHVPNVLKEMLELRYLCLPWFMHDKTKLELGDLVNLEHLWYFSTQHSSVTDLLRMTKLRGLSVSLSERYTFEALLSSLRQLRNLETLYLDFRYKTYTVDYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHIYLYYCGIEEDPMPILEKLLHLKSVELSSEAF






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox