PRGDB00061842 (disease resistance protein RPP8)

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disease resistance protein RPP8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464724 (GU646326)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype HAS-122 disease resistance protein RPP8 (RPP8) gene, RPP8-3 allele, partial cds.

DNA Sequence

GTGAGGTTTGAAGGAGGGAAGTTACCTTCTAGCATTGGAGGGCTTATCCACTTGAGATTCTTGAGCTTATACGACGCTGGGGTATCTCATCTACCTTCTTCTATGCGGAATTTAAAGTTTCTGCTCTATTTGAACTTAATTGTTGCTGCCGAGGAACCAGTTCATGTGCCAAATGTTTTGAAAGAGATGCTAGAGTTGAGGTACCTTTTCCTACCTTGGTTTATGCATGATAAAACCAAGTTGGAATTGGGTGATCTAGTGAACCTGGAGCACTTGTGGAATTTCTCAACGCAACACAGTAGTGTGACAGACTTCCTCCGTATGACCAAGCTCAGGTCTCTCTCTGTATCTTTGAGCGGAAGGTGTACTTTTGAAACCCTATCGTCATCTCTCCGTCAATTGCGTAACCTCGAGACGCTTTATTTGGATTTTCGGTCCCAAACTCATACGGTTGATTATGTGGGAGAGTTGGATCTGGATTTTATTCATCTTAAAGAGTTAGGATTGACAGGACGTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCTCCTTGAACACATATCTCTATTTAATTGCCGCATGGAGGAGGATCCAATGCCAATTCTAGAAAAGTTGCTTCATTTGAAGTCGGTTGAATTAAGACTTGAGGCTTTCGTTGGGAGGAAAATGTTGTGCTCAAAAGGTGGATTTCCCCAATTATGTGCTCTAGAAATATATGAAGAATTAGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCG


Protein sequences

Name Description Sequence
disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VRFEGGKLPSSIGGLIHLRFLSLYDAGVSHLPSSMRNLKFLLYLNLIVAAEEPVHVPNVLKEMLELRYLFLPWFMHDKTKLELGDLVNLEHLWNFSTQHSSVTDFLRMTKLRSLSVSLSGRCTFETLSSSLRQLRNLETLYLDFRSQTHTVDYVGELDLDFIHLKELGLTGRMSKIPDQHQFPPLLEHISLFNCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEIYEELELEEWIVEEGS

disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VRFEGGKLPSSIGGLIHLRFLSLYDAGVSHLPSSMRNLKFLLYLNLIVAAEEPVHVPNVLKEMLELRYLFLPWFMHDKTKLELGDLVNLEHLWNFSTQHSSVTDFLRMTKLRSLSVSLSGRCTFETLSSSLRQLRNLETLYLDFRSQTHTVDYVGELDLDFIHLKELGLTGRMSKIPDQHQFPPLLEHISLFNCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEIYEELELEEWIVEEGS

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF231
1-255 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VRFEGGKLPSSIGGLIHLRFLSLYDAGVSHLPSSMRNLKFLLYLNLIVAAEEPVHVPNVLKEMLELRYLFLPWFMHDKTKLELGDLVNLEHLWNFSTQHSSVTDFLRMTKLRSLSVSLSGRCTFETLSSSLRQLRNLETLYLDFRSQTHTVDYVGELDLDFIHLKELGLTGRMSKIPDQHQFPPLLEHISLFNCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEIYEELELEEWIVEEGS

HMMPanther: PTHR23155
1-255 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VRFEGGKLPSSIGGLIHLRFLSLYDAGVSHLPSSMRNLKFLLYLNLIVAAEEPVHVPNVLKEMLELRYLFLPWFMHDKTKLELGDLVNLEHLWNFSTQHSSVTDFLRMTKLRSLSVSLSGRCTFETLSSSLRQLRNLETLYLDFRSQTHTVDYVGELDLDFIHLKELGLTGRMSKIPDQHQFPPLLEHISLFNCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEIYEELELEEWIVEEGS

HMMPanther: PTHR23155:SF231
1-255 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VRFEGGKLPSSIGGLIHLRFLSLYDAGVSHLPSSMRNLKFLLYLNLIVAAEEPVHVPNVLKEMLELRYLFLPWFMHDKTKLELGDLVNLEHLWNFSTQHSSVTDFLRMTKLRSLSVSLSGRCTFETLSSSLRQLRNLETLYLDFRSQTHTVDYVGELDLDFIHLKELGLTGRMSKIPDQHQFPPLLEHISLFNCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEIYEELELEEWIVEEGS

HMMPanther: PTHR23155
1-255 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VRFEGGKLPSSIGGLIHLRFLSLYDAGVSHLPSSMRNLKFLLYLNLIVAAEEPVHVPNVLKEMLELRYLFLPWFMHDKTKLELGDLVNLEHLWNFSTQHSSVTDFLRMTKLRSLSVSLSGRCTFETLSSSLRQLRNLETLYLDFRSQTHTVDYVGELDLDFIHLKELGLTGRMSKIPDQHQFPPLLEHISLFNCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEIYEELELEEWIVEEGS

Gene3D: G3DSA:3.80.10.10
8-103 G3DSA:3.80.10.10

LPSSIGGLIHLRFLSLYDAGVSHLPSSMRNLKFLLYLNLIVAAEEPVHVPNVLKEMLELRYLFLPWFMHDKTKLELGDLVNLEHLWNFSTQHSSVT

superfamily: SSF52058
8-242 SSF52058,LRR

LPSSIGGLIHLRFLSLYDAGVSHLPSSMRNLKFLLYLNLIVAAEEPVHVPNVLKEMLELRYLFLPWFMHDKTKLELGDLVNLEHLWNFSTQHSSVTDFLRMTKLRSLSVSLSGRCTFETLSSSLRQLRNLETLYLDFRSQTHTVDYVGELDLDFIHLKELGLTGRMSKIPDQHQFPPLLEHISLFNCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEIYE

Gene3D: G3DSA:3.80.10.10
8-103 G3DSA:3.80.10.10

LPSSIGGLIHLRFLSLYDAGVSHLPSSMRNLKFLLYLNLIVAAEEPVHVPNVLKEMLELRYLFLPWFMHDKTKLELGDLVNLEHLWNFSTQHSSVT

superfamily: SSF52058
8-242 SSF52058,LRR

LPSSIGGLIHLRFLSLYDAGVSHLPSSMRNLKFLLYLNLIVAAEEPVHVPNVLKEMLELRYLFLPWFMHDKTKLELGDLVNLEHLWNFSTQHSSVTDFLRMTKLRSLSVSLSGRCTFETLSSSLRQLRNLETLYLDFRSQTHTVDYVGELDLDFIHLKELGLTGRMSKIPDQHQFPPLLEHISLFNCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEIYE

Gene3D: G3DSA:3.80.10.10
104-241 G3DSA:3.80.10.10

DFLRMTKLRSLSVSLSGRCTFETLSSSLRQLRNLETLYLDFRSQTHTVDYVGELDLDFIHLKELGLTGRMSKIPDQHQFPPLLEHISLFNCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEIY

Gene3D: G3DSA:3.80.10.10
104-241 G3DSA:3.80.10.10

DFLRMTKLRSLSVSLSGRCTFETLSSSLRQLRNLETLYLDFRSQTHTVDYVGELDLDFIHLKELGLTGRMSKIPDQHQFPPLLEHISLFNCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEIY






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