PRGDB00061843 (disease resistance protein RPP8)

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disease resistance protein RPP8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464722 (GU646325)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype HAS-122 disease resistance protein RPP8 (RPP8) gene, RPP8-2 allele, partial cds.

DNA Sequence

GTAAAGTTTGAAGGAGGGAAGTTACCTTCTAGCATCGGAGGGCTCATCCACTTGAGATTCTTGAGATTATTGAATGCTAGGATATCTCATCTACCTTCTAGTATAGGGAATTTAAAGCTTCTGCTCTATTTGGACTTACGTGTTGCTGCAGAGGAACCAGTTCATGTGCCAAATGTTTTGAAAGAGATGCTAGAGTTGAGGTGCCTTTCCCTACCTTGGTTTATGCATGATAAAACCAAGTTGGAATTGGGTGATCTAGTGAACCTGGAGCACTTGTGGAGTTTCTCAACGCAACACAGTAGTGTGACAGACCTCCTCCGTATGACCAAGCTCAAGGGTCTCTCTGTATCTTTGAGCGAGAGGTATACTTTTGAAGCCCTATCGTCATCTCTCCGTCAATTGCCAAACCTGGAGACGGTTATTTTCATTTATGAAACCTATATGGTTGATTATGTGGGAGAGTTTGTTCTGGATTTTATTCATCTAAAAGAGTTAGGATTGAGAGGACGTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCTCCTTGAACACATAGATCTAGTGTGTTGCCGCATTGAGGAGGATCCAATGCCGATTCTAGAAAGGTTGCTTCATTTGAAGTCGGTTAAATTAGGATCTGACGCTTTCGTTGGGAGGAAAATGTTGTGCTCAAAAGGTGGATTTCCTCAATTATGTGCTCTAGAAATATCTGAAGAATTAGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCG


Protein sequences

Name Description Sequence
disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VKFEGGKLPSSIGGLIHLRFLRLLNARISHLPSSIGNLKLLLYLDLRVAAEEPVHVPNVLKEMLELRCLSLPWFMHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLKGLSVSLSERYTFEALSSSLRQLPNLETVIFIYETYMVDYVGEFVLDFIHLKELGLRGRMSKIPDQHQFPPLLEHIDLVCCRIEEDPMPILERLLHLKSVKLGSDAFVGRKMLCSKGGFPQLCALEISEELELEEWIVEEGS

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF231
1-253 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VKFEGGKLPSSIGGLIHLRFLRLLNARISHLPSSIGNLKLLLYLDLRVAAEEPVHVPNVLKEMLELRCLSLPWFMHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLKGLSVSLSERYTFEALSSSLRQLPNLETVIFIYETYMVDYVGEFVLDFIHLKELGLRGRMSKIPDQHQFPPLLEHIDLVCCRIEEDPMPILERLLHLKSVKLGSDAFVGRKMLCSKGGFPQLCALEISEELELEEWIVEEGS

HMMPanther: PTHR23155
1-253 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VKFEGGKLPSSIGGLIHLRFLRLLNARISHLPSSIGNLKLLLYLDLRVAAEEPVHVPNVLKEMLELRCLSLPWFMHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLKGLSVSLSERYTFEALSSSLRQLPNLETVIFIYETYMVDYVGEFVLDFIHLKELGLRGRMSKIPDQHQFPPLLEHIDLVCCRIEEDPMPILERLLHLKSVKLGSDAFVGRKMLCSKGGFPQLCALEISEELELEEWIVEEGS

superfamily: SSF52058
2-240 SSF52058,LRR

KFEGGKLPSSIGGLIHLRFLRLLNARISHLPSSIGNLKLLLYLDLRVAAEEPVHVPNVLKEMLELRCLSLPWFMHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLKGLSVSLSERYTFEALSSSLRQLPNLETVIFIYETYMVDYVGEFVLDFIHLKELGLRGRMSKIPDQHQFPPLLEHIDLVCCRIEEDPMPILERLLHLKSVKLGSDAFVGRKMLCSKGGFPQLCALEISE

Gene3D: G3DSA:3.80.10.10
7-71 G3DSA:3.80.10.10

KLPSSIGGLIHLRFLRLLNARISHLPSSIGNLKLLLYLDLRVAAEEPVHVPNVLKEMLELRCLSL

Gene3D: G3DSA:3.80.10.10
91-240 G3DSA:3.80.10.10

HLWSFSTQHSSVTDLLRMTKLKGLSVSLSERYTFEALSSSLRQLPNLETVIFIYETYMVDYVGEFVLDFIHLKELGLRGRMSKIPDQHQFPPLLEHIDLVCCRIEEDPMPILERLLHLKSVKLGSDAFVGRKMLCSKGGFPQLCALEISE






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