PRGDB00061847 (disease resistance protein RPP8)

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disease resistance protein RPP8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464713 (GU646320)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype HAS-114 disease resistance protein RPP8 (RPP8) gene, RPP8-4 allele, partial cds.

DNA Sequence

GTGAATTTTAAAGGATGGAAGTTACCTTCTAGCATTGGAAGGCTCATCCACTTGAGATTCTTGAGCTTATACCAGGCTGAGGTATTTTATCTACCTTCTACTATGCGGAGTTTGAAGCGTCTACTCTATTTGAACTTAAATGTTGGTATGGTGCTACAAGTTCATGTGCCAAATGTTTTGAAAGAGATGCTAGAGTTGAGGTACCTTTCCCTACCTACCGAGTTGGAATTGGGTGATCTAGTGAACCTAGAGCACTTGTGGTTTTTCTCAACGCAACATTGTAGTGTGACAGACCTCCTCCGTATGACCAAGCTCAGGTCTCTCAGTGTATCTTTGAGCGAAAGGTGTACTTTTAAAACCCTATCGTCATCTCTCCGTGAATTGCGAAACCTCGAGACGCTTCATTTCCTTTCTACGAGCAAAACCATTATGGTTGATTATGTGGGAGAGTTCGATCTGAATTTTGTTCATCTAAAAGAGTTAGAATTGGCAGTACGTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCTCCTTGAACACATATCTCTATTTTTTTGCCGCATGGAGGAGGATCCAATGCCAATTCTAGAAAAGTTGCTTCATTTGAAGTCGGTTGAATTAAGACTTGAGGCTTTCGTTGGGAGGAAAATGTTGTGCTCAAAAGGTGGATTTCCTCAATTATGTGCTCTAGAAATATCTGAAGAATTAGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCG


Protein sequences

Name Description Sequence
disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VNFKGWKLPSSIGRLIHLRFLSLYQAEVFYLPSTMRSLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELELGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEISEELELEEWIVEEGS

Domains

Domain Start-End Description Sequence

superfamily: SSF52058
2-236 SSF52058,LRR

NFKGWKLPSSIGRLIHLRFLSLYQAEVFYLPSTMRSLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELELGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEISE

HMMPanther: PTHR23155:SF231
7-249 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

KLPSSIGRLIHLRFLSLYQAEVFYLPSTMRSLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELELGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEISEELELEEWIVEEGS

HMMPanther: PTHR23155
7-249 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

KLPSSIGRLIHLRFLSLYQAEVFYLPSTMRSLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELELGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEISEELELEEWIVEEGS

Gene3D: G3DSA:3.80.10.10
8-105 G3DSA:3.80.10.10

LPSSIGRLIHLRFLSLYQAEVFYLPSTMRSLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELELGDLVNLEHLWFFSTQHCSVTDLLRMTKL

Gene3D: G3DSA:3.80.10.10
106-236 G3DSA:3.80.10.10

RSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLCALEISE






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