PRGDB00061849 (disease resistance protein RPP8)

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disease resistance protein RPP8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464708 (GU646317)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype HAS-114 disease resistance protein RPP8 (RPP8) gene, RPP8-1 allele, partial cds.

DNA Sequence

GCGAAATTTAAAGGAGGGAAGTTACCTTCTAGCATCGGAGGGCTCATCCACTTGAGATTCTTGAGCTTAGACGATGCTGGGGTATCTCATCTACCTTCTTCTATGCGGAATTTAAAGCTTCTGCTCTATTTGAACTTAAGTGTTGCTATTGGGGAACCAGTTCATGTGCCAAATGTTTTGAAAGAGATGCTAGAGTTGAGGTACCTTTTCCTACCTTGGTTTAAACATGATAAAACCAAGTTGGAATTGGGTGATCTAGTGAACCTGGAGCACTTGTGGAGTTTCTCAACGCAACACAGTAGTGTGACAGACCTCCTCCGTATGACCAAGCTCAGGTATCTCTCTGTATCTTTGAGCGAAAGGTGTACTTTTGAAACCCTATCGTCATCTCTCCGTCAATTGCGTAACCTTGAGACGCTTTATTTGGATTTTTCGCCCAAAACCAATTACGTGGGAGAGTTGGTTCTGGATTTTATTCATCTAAAAGAGTTAGTATTGACAGTACGTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCACCTTGAACACATATCTCTATTTAATTGCGGCATGGAGGAGGATCCAATGCCGATTCTAGAAAAGTTGCTTCATTTGAAGTCGGTTAAATTAACATTTGAGGCTTTCGTTGGGAGGAAAATGGTGTGCTCAAAAGGCGGATTTTCTCAATTATGTGCTCTAGAAATATATGAACAATTGGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCG


Protein sequences

Name Description Sequence
disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

AKFKGGKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRYLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGMEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFSQLCALEIYEQLELEEWIVEEGS

Domains

Domain Start-End Description Sequence

superfamily: SSF52058
6-239 SSF52058,LRR

GKLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRYLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGMEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFSQLCALEIYE

HMMPanther: PTHR23155:SF231
7-252 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

KLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRYLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGMEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFSQLCALEIYEQLELEEWIVEEGS

HMMPanther: PTHR23155
7-252 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

KLPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRYLSVSLSERCTFETLSSSLRQLRNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGMEEDPMPILEKLLHLKSVKLTFEAFVGRKMVCSKGGFSQLCALEIYEQLELEEWIVEEGS

Gene3D: G3DSA:3.80.10.10
8-134 G3DSA:3.80.10.10

LPSSIGGLIHLRFLSLDDAGVSHLPSSMRNLKLLLYLNLSVAIGEPVHVPNVLKEMLELRYLFLPWFKHDKTKLELGDLVNLEHLWSFSTQHSSVTDLLRMTKLRYLSVSLSERCTFETLSSSLRQL

Gene3D: G3DSA:3.80.10.10
135-213 G3DSA:3.80.10.10

RNLETLYLDFSPKTNYVGELVLDFIHLKELVLTVRMSKIPDQHQFPPHLEHISLFNCGMEEDPMPILEKLLHLKSVKLT






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