PRGDB00061852 (disease resistance protein RPP8)

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disease resistance protein RPP8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464702 (GU646314)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype NT-50 disease resistance protein RPP8 (RPP8) gene, RPP8-2 allele, partial cds.

DNA Sequence

GTGAAGTTTGAAGGAGGGAAGTTATCTTCTAGCATTGGAGGGCTCATCCACTTGAGATTCTTGAGCTTATACAAGGCTGGAGTATCTCATCTACCTTCTACTATGCGGAATTTAAAGCTTCTGCTCTATTTGAACTTAAATGTTGCTATCCATGAACCGGTTCATGTGCCAAATGTTTTGAAAGAGATGCTAGAGTTGAGAAACCTTTTCCTACCTTGGTTAATGCGTGATAAAACCAAGTTGGATTTGGGTGATCTAGTGAACCTAGGGGAGTTGTGGTTTTTCTCAACGCAACACAGTAGTGTGACAGACCTCCTCCGTATGACCAAGCTCAGGTCTCTCTCTGTATCTTTGAGCGGAAGGTGTACTTTTGAAACCCTATCGTCATCTCTCCGTAAATTGCGTAACCTCGAGTCGCTTTATTTGGATTTTCGGTACAAAACCTATACGGTTGATTATGTGGGAGAGTTGGATCTGGATTTTATTCATCTAAAAGAGTTAGGATTGGCAGTACGTATGTCAAAGATTCCTGATCAACATCAATTCCGTCCCCACCTTGAACACATATCTCTATTTGATTGCCGCATGGAGGAGGATCCAATGCCAATTCTAGAAAAGTTGCTTCATTTGAAGTCGGTTTTATTAGGATCTGACGCTTTCGTTGGGAGGAAAATGTTGTGCTCAAAAGGTGGATTTCCTCAATTATGTGCTCTAGAAATACCTCAAGAATCAGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCG


Protein sequences

Name Description Sequence
disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VKFEGGKLSSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLNVAIHEPVHVPNVLKEMLELRNLFLPWLMRDKTKLDLGDLVNLGELWFFSTQHSSVTDLLRMTKLRSLSVSLSGRCTFETLSSSLRKLRNLESLYLDFRYKTYTVDYVGELDLDFIHLKELGLAVRMSKIPDQHQFRPHLEHISLFDCRMEEDPMPILEKLLHLKSVLLGSDAFVGRKMLCSKGGFPQLCALEIPQESELEEWIVEEGS

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF231
1-255 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VKFEGGKLSSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLNVAIHEPVHVPNVLKEMLELRNLFLPWLMRDKTKLDLGDLVNLGELWFFSTQHSSVTDLLRMTKLRSLSVSLSGRCTFETLSSSLRKLRNLESLYLDFRYKTYTVDYVGELDLDFIHLKELGLAVRMSKIPDQHQFRPHLEHISLFDCRMEEDPMPILEKLLHLKSVLLGSDAFVGRKMLCSKGGFPQLCALEIPQESELEEWIVEEGS

HMMPanther: PTHR23155
1-255 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VKFEGGKLSSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLNVAIHEPVHVPNVLKEMLELRNLFLPWLMRDKTKLDLGDLVNLGELWFFSTQHSSVTDLLRMTKLRSLSVSLSGRCTFETLSSSLRKLRNLESLYLDFRYKTYTVDYVGELDLDFIHLKELGLAVRMSKIPDQHQFRPHLEHISLFDCRMEEDPMPILEKLLHLKSVLLGSDAFVGRKMLCSKGGFPQLCALEIPQESELEEWIVEEGS

superfamily: SSF52058
2-242 SSF52058,LRR

KFEGGKLSSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLNVAIHEPVHVPNVLKEMLELRNLFLPWLMRDKTKLDLGDLVNLGELWFFSTQHSSVTDLLRMTKLRSLSVSLSGRCTFETLSSSLRKLRNLESLYLDFRYKTYTVDYVGELDLDFIHLKELGLAVRMSKIPDQHQFRPHLEHISLFDCRMEEDPMPILEKLLHLKSVLLGSDAFVGRKMLCSKGGFPQLCALEIPQ

Gene3D: G3DSA:3.80.10.10
10-217 G3DSA:3.80.10.10

SSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLNVAIHEPVHVPNVLKEMLELRNLFLPWLMRDKTKLDLGDLVNLGELWFFSTQHSSVTDLLRMTKLRSLSVSLSGRCTFETLSSSLRKLRNLESLYLDFRYKTYTVDYVGELDLDFIHLKELGLAVRMSKIPDQHQFRPHLEHISLFDCRMEEDPMPILEKLLHLKSVLLGS






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Analyses

Blast

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