PRGDB00061857 (disease resistance protein RPP8)

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disease resistance protein RPP8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464690 (GU646307)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype SB-09 disease resistance protein RPP8 (RPP8) gene, RPP8-2 allele, partial cds.

DNA Sequence

GTGAATTTTAAAGGATGGAAGTTACCTTCTAGCATTGGAAGGCTCATCCACTTGAGATTCTTGAGCTTATACCAGGCTGGGGTATTTTATCTACCTTCTACTATGCGGAATTTGAAGCGTCTACTCTATTTGAACTTAAATGTTGGTATGGTGCTACAAGTTCATGTGCCAAATGTTTTGAAAGAGATGCTAGAGTTGAGGTACCTTTCCCTACCTACCGAGTTGGAATCGGGTGATCTAGTGAACCTAGAGCACTTGTGGTTTTTCTCAACGCAACATTGTAGTGTGACAGACCTCCTCCGTATGACCAAGCTCAGGTCTCTCAGTGTATCTTTGAGCGAAAGGTGTACTTTTAAAACCCTATCGTCATCTCTCCGTGAATTGCGAAACCTCGAGACGCTTCATTTCCTTTCTACGAGCAAAACCATTATGGTTGATTATGTGGGAGAGTTCGATCTGAATTTTGTTCATCTAAAAGAGTTAGAATTGGCAGTACGTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCTCCTTGAACACATATCTCTATTTTTTTGCCGCATGGAGGAGGATCCAATGCCAATTCTAGAAAAGTTGCTTCATTTGAAGTCGGTTGAATTAAGACTTGAGGCTTTCGTTGGGAGGAAAATGTTGTGCTCAAAAGGTGGATTTCCTCAATTACGTGCTCTAGAAATATCTGAAGAATTAGAGTTGGAAGAGTGGATAGTAGAAGAAGGGTCG


Protein sequences

Name Description Sequence
disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VNFKGWKLPSSIGRLIHLRFLSLYQAGVFYLPSTMRNLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELESGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLRALEISEELELEEWIVEEGS

disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VNFKGWKLPSSIGRLIHLRFLSLYQAGVFYLPSTMRNLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELESGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLRALEISEELELEEWIVEEGS

Domains

Domain Start-End Description Sequence

superfamily: SSF52058
2-236 SSF52058,LRR

NFKGWKLPSSIGRLIHLRFLSLYQAGVFYLPSTMRNLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELESGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLRALEISE

superfamily: SSF52058
2-236 SSF52058,LRR

NFKGWKLPSSIGRLIHLRFLSLYQAGVFYLPSTMRNLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELESGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLRALEISE

HMMPanther: PTHR23155:SF231
7-249 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

KLPSSIGRLIHLRFLSLYQAGVFYLPSTMRNLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELESGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLRALEISEELELEEWIVEEGS

HMMPanther: PTHR23155
7-249 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

KLPSSIGRLIHLRFLSLYQAGVFYLPSTMRNLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELESGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLRALEISEELELEEWIVEEGS

HMMPanther: PTHR23155:SF231
7-249 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

KLPSSIGRLIHLRFLSLYQAGVFYLPSTMRNLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELESGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLRALEISEELELEEWIVEEGS

HMMPanther: PTHR23155
7-249 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

KLPSSIGRLIHLRFLSLYQAGVFYLPSTMRNLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELESGDLVNLEHLWFFSTQHCSVTDLLRMTKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLRALEISEELELEEWIVEEGS

Gene3D: G3DSA:3.80.10.10
9-102 G3DSA:3.80.10.10

PSSIGRLIHLRFLSLYQAGVFYLPSTMRNLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELESGDLVNLEHLWFFSTQHCSVTDLLRM

Gene3D: G3DSA:3.80.10.10
9-102 G3DSA:3.80.10.10

PSSIGRLIHLRFLSLYQAGVFYLPSTMRNLKRLLYLNLNVGMVLQVHVPNVLKEMLELRYLSLPTELESGDLVNLEHLWFFSTQHCSVTDLLRM

Gene3D: G3DSA:3.80.10.10
103-236 G3DSA:3.80.10.10

TKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLRALEISE

Gene3D: G3DSA:3.80.10.10
103-236 G3DSA:3.80.10.10

TKLRSLSVSLSERCTFKTLSSSLRELRNLETLHFLSTSKTIMVDYVGEFDLNFVHLKELELAVRMSKIPDQHQFPPLLEHISLFFCRMEEDPMPILEKLLHLKSVELRLEAFVGRKMLCSKGGFPQLRALEISE






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