PRGDB00061858 (disease resistance protein RPP8)

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disease resistance protein RPP8
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464688 (GU646306)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype SB-09 disease resistance protein RPP8 (RPP8) gene, RPP8-1 allele, partial cds.

DNA Sequence

GTGAAATTTAAAGGAGGGAAGTTACCTTCTAGCATCGGAGGGCTCATCCACTTGAGATTCCTGAGCTTATACAAGGCTGGAGTATCTCATCTACCTTCTACTATGCGGAATTTAAAGCTTCTGCTCTATTTGAACTTAAGTGTTGCTATTGGGGAACCAGTTCATGTGCCAAATGTTTTGAAAGAGATGATAGAGTTGAGAAACCTTTTCCTACCTTGGTTAATGCATGATAAAGCCAAGTTGGATTTGGGTGATCTAGTGAACCTAGAGGAGTTGGGGTTTTTCTCAACGCAACACAGTAGTGTGACAGACCTCCTCCGTATGACCAAGCTCGGGTCTCTCTCTGTATCTTTGAGCGAAAGGTGTACCTTTGAAACCCTATCGACATCTCTCCGTCAATTGCGTAACCTCAAGACGCTTTATGTGGGAGAGTTGGATCTGGATTTTATTCATCTAAAAGAGTTAGGATTGACAGTACGTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCACCTTGAACACATATCTCTATTTGATTGCCGCATTGAGGAGGATCCAATGCCGATTCTAGAAAGGTTGCTTCATTTGAAGTCGGTTAAATTAAGATATGACGCTTTCGTTGGGAGGAGAATGGTGTGCTCAAAAGGCGGATTTCCTCAATTACGTGCTCTAGAAATATATAAACAATCAGAGTTGGAAGAGTGGATAGTGGAAGAAGGGTCG


Protein sequences

Name Description Sequence
disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VKFKGGKLPSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRNLFLPWLMHDKAKLDLGDLVNLEELGFFSTQHSSVTDLLRMTKLGSLSVSLSERCTFETLSTSLRQLRNLKTLYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHISLFDCRIEEDPMPILERLLHLKSVKLRYDAFVGRRMVCSKGGFPQLRALEIYKQSELEEWIVEEGS

disease resistance protein RPP8 disease resistance protein RPP8 [Arabidopsis lyrata subsp. petraea].

VKFKGGKLPSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRNLFLPWLMHDKAKLDLGDLVNLEELGFFSTQHSSVTDLLRMTKLGSLSVSLSERCTFETLSTSLRQLRNLKTLYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHISLFDCRIEEDPMPILERLLHLKSVKLRYDAFVGRRMVCSKGGFPQLRALEIYKQSELEEWIVEEGS

Domains

Domain Start-End Description Sequence

superfamily: SSF52058
2-230 SSF52058,LRR

KFKGGKLPSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRNLFLPWLMHDKAKLDLGDLVNLEELGFFSTQHSSVTDLLRMTKLGSLSVSLSERCTFETLSTSLRQLRNLKTLYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHISLFDCRIEEDPMPILERLLHLKSVKLRYDAFVGRRMVCSKGGFPQLRALEIYK

superfamily: SSF52058
2-230 SSF52058,LRR

KFKGGKLPSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRNLFLPWLMHDKAKLDLGDLVNLEELGFFSTQHSSVTDLLRMTKLGSLSVSLSERCTFETLSTSLRQLRNLKTLYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHISLFDCRIEEDPMPILERLLHLKSVKLRYDAFVGRRMVCSKGGFPQLRALEIYK

Gene3D: G3DSA:3.80.10.10
6-228 G3DSA:3.80.10.10

GKLPSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRNLFLPWLMHDKAKLDLGDLVNLEELGFFSTQHSSVTDLLRMTKLGSLSVSLSERCTFETLSTSLRQLRNLKTLYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHISLFDCRIEEDPMPILERLLHLKSVKLRYDAFVGRRMVCSKGGFPQLRALEI

Gene3D: G3DSA:3.80.10.10
6-228 G3DSA:3.80.10.10

GKLPSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRNLFLPWLMHDKAKLDLGDLVNLEELGFFSTQHSSVTDLLRMTKLGSLSVSLSERCTFETLSTSLRQLRNLKTLYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHISLFDCRIEEDPMPILERLLHLKSVKLRYDAFVGRRMVCSKGGFPQLRALEI

HMMPanther: PTHR23155:SF231
7-243 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

KLPSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRNLFLPWLMHDKAKLDLGDLVNLEELGFFSTQHSSVTDLLRMTKLGSLSVSLSERCTFETLSTSLRQLRNLKTLYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHISLFDCRIEEDPMPILERLLHLKSVKLRYDAFVGRRMVCSKGGFPQLRALEIYKQSELEEWIVEEGS

HMMPanther: PTHR23155
7-243 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

KLPSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRNLFLPWLMHDKAKLDLGDLVNLEELGFFSTQHSSVTDLLRMTKLGSLSVSLSERCTFETLSTSLRQLRNLKTLYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHISLFDCRIEEDPMPILERLLHLKSVKLRYDAFVGRRMVCSKGGFPQLRALEIYKQSELEEWIVEEGS

HMMPanther: PTHR23155:SF231
7-243 PTHR23155:SF231,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

KLPSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRNLFLPWLMHDKAKLDLGDLVNLEELGFFSTQHSSVTDLLRMTKLGSLSVSLSERCTFETLSTSLRQLRNLKTLYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHISLFDCRIEEDPMPILERLLHLKSVKLRYDAFVGRRMVCSKGGFPQLRALEIYKQSELEEWIVEEGS

HMMPanther: PTHR23155
7-243 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

KLPSSIGGLIHLRFLSLYKAGVSHLPSTMRNLKLLLYLNLSVAIGEPVHVPNVLKEMIELRNLFLPWLMHDKAKLDLGDLVNLEELGFFSTQHSSVTDLLRMTKLGSLSVSLSERCTFETLSTSLRQLRNLKTLYVGELDLDFIHLKELGLTVRMSKIPDQHQFPPHLEHISLFDCRIEEDPMPILERLLHLKSVKLRYDAFVGRRMVCSKGGFPQLRALEIYKQSELEEWIVEEGS






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Analyses

Blast

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