PRGDB00061868 (disease resistance protein RPS5)

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disease resistance protein RPS5
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 291464629 (GU646273)
Gene Class Unknown
Domain Type LRR
Gene Species Arabidopsis lyrata subsp. petraea

Comment?

Arabidopsis lyrata subsp. petraea ecotype ST-30 disease resistance protein RPS5 (RPS5) gene, RPS5-1 allele, partial cds.

DNA Sequence

GAGATTGAAGAGATATTTGACAGTCACGAGTGTGCTGCACTTACAACTCTATTTCTCCAAAAGAACGACATGGTAAAGATCTCGGCTGAATTCTTTCGATGTATGCCTCATCTGGTGGTTTTAGATCTATCAGAGAATCACAGTCTCAATGAATTACCAGAAGAAATATCAGAGTTGGTCTCTTTGAGATATTTCAACTTGTCATATACTTGTATACATCAACTACCCGTAGGTTTATGGACATTGAAAAAGCTAATACATCTGAATCTCGAACACATGAGCAGTCTTGGGAGTATATTAGGGATATCAAATTTGTGGAATTTGAGGACATTGGGACTACGAGATTCCAAACTGTTGCTAGATATGAGTTTGGTGAAGGAGCTGCAGCTCTTAGAACATCTAGAAGTTGTAACCCTAGATATATCATCAAGTTTGGTTGCAGAGCCATTGTTATGCTCTCACAGGTTGGTGGAATGTATAAAAGAGGTAGATATTAAGTATCTTAAGGAAGAAGCAGTAAGAGTATTGACTCTGCCAACCATGGGTAATCTCCGTAGGCTCGGGATAAAAATGTGTGGAATGAGGGAGATAAAGATAGAGTCGACAACTTCATCATCATCGCGGAACATAAGTCCCACAACTCCATTCTTCTCCAACCTCTCCAGTGTCTTTATTGCTAAATGCCATGGTCTTAAGGATTTGACGTGGCTGCTGTTTGCTCCGAATCTTACTTTTCTTGAAGTTGGGTTCTCAAAGGAAGTAGAGGATATAATTAGCGAAGAGAAAGCTGAGGAGCATTCTTCAGCTACGATTGTTCCTTTTAGGAAACTAGAAACGCTACACCTGTTTGAATTACGC


Protein sequences

Name Description Sequence
disease resistance protein RPS5 disease resistance protein RPS5 [Arabidopsis lyrata subsp. petraea].

EIEEIFDSHECAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSKLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSSATIVPFRKLETLHLFELR

disease resistance protein RPS5 disease resistance protein RPS5 [Arabidopsis lyrata subsp. petraea].

EIEEIFDSHECAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSKLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSSATIVPFRKLETLHLFELR

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF108
1-286 PTHR23155:SF108,SUBFAMILY NOT NAMED

EIEEIFDSHECAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSKLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSSATIVPFRKLETLHLFELR

HMMPanther: PTHR23155
1-286 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

EIEEIFDSHECAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSKLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSSATIVPFRKLETLHLFELR

HMMPanther: PTHR23155:SF108
1-286 PTHR23155:SF108,SUBFAMILY NOT NAMED

EIEEIFDSHECAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSKLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSSATIVPFRKLETLHLFELR

HMMPanther: PTHR23155
1-286 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

EIEEIFDSHECAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSKLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSSATIVPFRKLETLHLFELR

Gene3D: G3DSA:3.80.10.10
8-227 G3DSA:3.80.10.10

SHECAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSKLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAK

Gene3D: G3DSA:3.80.10.10
8-227 G3DSA:3.80.10.10

SHECAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSKLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAK

superfamily: SSF52047
11-284 SSF52047,LRR

CAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSKLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSSATIVPFRKLETLHLFE

superfamily: SSF52047
11-284 SSF52047,LRR

CAALTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRDSKLLLDMSLVKELQLLEHLEVVTLDISSSLVAEPLLCSHRLVECIKEVDIKYLKEEAVRVLTLPTMGNLRRLGIKMCGMREIKIESTTSSSSRNISPTTPFFSNLSSVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKAEEHSSATIVPFRKLETLHLFE

HMMPfam: PF13855
14-70 LRR_8,Leucine rich repeat

LTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYT

HMMPfam: PF13855
14-70 LRR_8,Leucine rich repeat

LTTLFLQKNDMVKISAEFFRCMPHLVVLDLSENHSLNELPEEISELVSLRYFNLSYT






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