PRGDB00062148 (putative disease resistance protein)

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putative disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 22218101 (AF315085)
Gene Class NL
Domain Type NBS, LRR
Gene Species Brassica rapa subsp. oleifera

Comment?

Brassica rapa subsp. oleifera clone RGA71 putative disease resistance protein gene, partial cds.

DNA Sequence

ACTGCTCACACAGATCAACAATAAGTTTTCTGAAATAAGTGACAGGTTTGAAGTTGTGATATGGGTTGTTGTGTCTAAAAGTGCAACAGTCCGTAAGATTCAAAGAGACATAGCTCAAAAGGTTGGCCTTGTGGAGATGGGTTCGGGAGAGAAAGACGAGAACCAGAGAGCCCTTGACATCTACAATGTTCTTAGAAGAAGAAAGTTTGCGTTATTGTTGGATGACATATGGGAGAAAGTGGATTTAAAAGCGGTAGGAGTCCCCTACCCAACTAGAGATAATGGATGCAAGGTAGCATTCACAACTCGCTCTCGAGATGTGTGTGGCCGCATGGGGGTTGATGATCCAATGGAAGTTAGCTGTTTGCAACCAGACGAGTCGTGGGATCTGTTCCAAAGGACAGTTGGGGAAAACACACTGGGAAGTCATCCAGACATTCCAGAACTTGCGAGAAAAGTCGCTAGGAAATGCCGT


Protein sequences

Name Description Sequence
putative disease resistance protein putative disease resistance protein [Brassica rapa subsp. oleifera].

LLTQINNKFSEISDRFEVVIWVVVSKSATVRKIQRDIAQKVGLVEMGSGEKDENQRALDIYNVLRRRKFALLLDDIWEKVDLKAVGVPYPTRDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPDESWDLFQRTVGENTLGSHPDIPELARKVARKCR

Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-158 NB-ARC,NBS
NB-ARC

LLTQINNKFSEISDRFEVVIWVVVSKSATVRKIQRDIAQKVGLVEMGSGEKDENQRALDIYNVLRRRKFALLLDDIWEKVDLKAVGVPYPTRDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPDESWDLFQRTVGENTLGSHPDIPELARKVARKCR

superfamily: SSF52540
1-154 SSF52540

LLTQINNKFSEISDRFEVVIWVVVSKSATVRKIQRDIAQKVGLVEMGSGEKDENQRALDIYNVLRRRKFALLLDDIWEKVDLKAVGVPYPTRDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPDESWDLFQRTVGENTLGSHPDIPELARKVA

HMMPanther: PTHR23155:SF119
1-95 PTHR23155:SF119,RFL1 (RPS5-LIKE 1)

LLTQINNKFSEISDRFEVVIWVVVSKSATVRKIQRDIAQKVGLVEMGSGEKDENQRALDIYNVLRRRKFALLLDDIWEKVDLKAVGVPYPTRDNG

HMMPanther: PTHR23155
1-95 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LLTQINNKFSEISDRFEVVIWVVVSKSATVRKIQRDIAQKVGLVEMGSGEKDENQRALDIYNVLRRRKFALLLDDIWEKVDLKAVGVPYPTRDNG


List of References

P Tanhuanpää
Identification and mapping of resistance gene analogs and a white rust resistance locus in Brassica rapa ssp. oleifera.
Theor. Appl. Genet.: 2004, 108(6);1039-46
PubMed:15067390 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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