PRGDB00062150 (putative disease resistance protein)

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putative disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 22218095 (AF315081)
Gene Class CNL
Domain Type NBS, LRR
Gene Species Brassica rapa subsp. oleifera

Comment?

Brassica rapa subsp. oleifera clone RGA6 putative disease resistance protein gene, partial cds.

DNA Sequence

TCTTCTCACACAACTCAACAATAAGTTTAGTGGCATGACGTGTGGATTTGATTTTGTGATTTGGGTTGTGGTGTCTAAAGAGTTACAAGTAGAGAAGATTCAAAGTGAGATCGCTCGGAAGGTTGGTCTTGATGGAGATGAATGGAAACAAAAAGAGAAAAGCCAAAAAGCTGATGTTATATACAATTTCTTAAGGAAAAAGAGATTCATGTTGTTTTTAGATGACATATGGGAGAAGGTGGATTTAGTTGAGATTGGAATCCCGTTTCCAACAACACAAAACCGATGCAAAGTGGCATTCACTACCCGTTCCAAGGCTATATGTGCGCACATGGGCGATGAAGAACCAATGGAAGTCAAGTGCTTGTCGGAAGATAACGCATATGATTTGTTCCAAAAGAAGGTTGGACAAATAACATTAAGGAGTGATCCAGGGATCCCCGAACTTGCAAGAAAAGTTGCTAAGAAATGTTGT


Protein sequences

Name Description Sequence
putative disease resistance protein putative disease resistance protein [Brassica rapa subsp. oleifera].

LLTQLNNKFSGMTCGFDFVIWVVVSKELQVEKIQSEIARKVGLDGDEWKQKEKSQKADVIYNFLRKKRFMLFLDDIWEKVDLVEIGIPFPTTQNRCKVAFTTRSKAICAHMGDEEPMEVKCLSEDNAYDLFQKKVGQITLRSDPGIPELARKVAKKCC

Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-157 NB-ARC,NBS
NB-ARC

LLTQLNNKFSGMTCGFDFVIWVVVSKELQVEKIQSEIARKVGLDGDEWKQKEKSQKADVIYNFLRKKRFMLFLDDIWEKVDLVEIGIPFPTTQNRCKVAFTTRSKAICAHMGDEEPMEVKCLSEDNAYDLFQKKVGQITLRSDPGIPELARKVAKKC

HMMPanther: PTHR23155:SF110
1-98 PTHR23155:SF110,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

LLTQLNNKFSGMTCGFDFVIWVVVSKELQVEKIQSEIARKVGLDGDEWKQKEKSQKADVIYNFLRKKRFMLFLDDIWEKVDLVEIGIPFPTTQNRCKV

HMMPanther: PTHR23155
1-98 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LLTQLNNKFSGMTCGFDFVIWVVVSKELQVEKIQSEIARKVGLDGDEWKQKEKSQKADVIYNFLRKKRFMLFLDDIWEKVDLVEIGIPFPTTQNRCKV

superfamily: SSF52540
16-154 SSF52540

FDFVIWVVVSKELQVEKIQSEIARKVGLDGDEWKQKEKSQKADVIYNFLRKKRFMLFLDDIWEKVDLVEIGIPFPTTQNRCKVAFTTRSKAICAHMGDEEPMEVKCLSEDNAYDLFQKKVGQITLRSDPGIPELARKVA


List of References

P Tanhuanpää
Identification and mapping of resistance gene analogs and a white rust resistance locus in Brassica rapa ssp. oleifera.
Theor. Appl. Genet.: 2004, 108(6);1039-46
PubMed:15067390 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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