PRGDB00062156 (disease resistance protein homolog)

From PRG Wiki
Jump to: navigation, search
disease resistance protein homolog
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 13924640 (AF258292)
Gene Class T
Domain Type TIR, LRR
Gene Species Brassica oleracea

Comment?

Brassica oleracea cultivar Rapid Cycling disease resistance protein homolog (MPL12-5-BO-2) gene, partial cds.

DNA Sequence

AGGAAGAGTGTGGTCAAATGGTGATACCTGTTTTCTACCGTTTGGATCCTTCCCATGTGAGGAATCAAACCGGTGAATTTGGTAAAATCTTTGAAAAGACATGCCACGACGAAACAGAGGAAGTGAAGATAAGATGGAGTGAGGCTTTGACCAATGTAGCTAATATCCTTGGATATCATTCTGTCATATGGGGTAACGAAGCAGACATGGTTGAAAAAATTGCTAATGATGTTATAGAGAAACTACTTTTAACTCCAGCAAAGGATTCTGAGGACTTTGTCGGCATCGAAGATCATATTGCAAAATTGAGTATGTTGTTGCAGTTGGAAGCAGAGGAAGTGATGATGGTTGGTTTATGGGGTTCTTCCGGGATTGGAAAGACTACTATTGCAAGAGTTTTATTCAAC


Protein sequences

Name Description Sequence
disease resistance protein homolog disease resistance protein homolog [Brassica oleracea].

EECGQMVIPVFYRLDPSHVRNQTGEFGKIFEKTCHDETEEVKIRWSEALTNVANILGYHSVIWGNEADMVEKIANDVIEKLLLTPAKDSEDFVGIEDHIAKLSMLLQLEAEEVMMVGLWGSSGIGKTTIARVLFN

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-58 TIR
Toll-Interleukin receptor

EECGQMVIPVFYRLDPSHVRNQTGEFGKIFEKTCHDETEEVKIRWSEALTNVANILGY

ProfileScan: PS50104
IPR000157
1-55 TIR
Toll-Interleukin receptor

EECGQMVIPVFYRLDPSHVRNQTGEFGKIFEKTCHDETEEVKIRWSEALTNVANI

Gene3D: G3DSA:3.40.50.10140
2-56 G3DSA:3.40.50.10140

ECGQMVIPVFYRLDPSHVRNQTGEFGKIFEKTCHDETEEVKIRWSEALTNVANIL

HMMPfam: PF01582
IPR000157
4-50 TIR
Toll-Interleukin receptor

GQMVIPVFYRLDPSHVRNQTGEFGKIFEKTCHDETEEVKIRWSEALT

HMMPanther: PTHR23155:SF292
5-135 PTHR23155:SF292,SUBFAMILY NOT NAMED

QMVIPVFYRLDPSHVRNQTGEFGKIFEKTCHDETEEVKIRWSEALTNVANILGYHSVIWGNEADMVEKIANDVIEKLLLTPAKDSEDFVGIEDHIAKLSMLLQLEAEEVMMVGLWGSSGIGKTTIARVLFN

HMMPanther: PTHR23155
5-135 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

QMVIPVFYRLDPSHVRNQTGEFGKIFEKTCHDETEEVKIRWSEALTNVANILGYHSVIWGNEADMVEKIANDVIEKLLLTPAKDSEDFVGIEDHIAKLSMLLQLEAEEVMMVGLWGSSGIGKTTIARVLFN

superfamily: SSF52540
64-135 SSF52540

GNEADMVEKIANDVIEKLLLTPAKDSEDFVGIEDHIAKLSMLLQLEAEEVMMVGLWGSSGIGKTTIARVLFN

Gene3D: G3DSA:3.40.50.300
84-135 G3DSA:3.40.50.300

TPAKDSEDFVGIEDHIAKLSMLLQLEAEEVMMVGLWGSSGIGKTTIARVLFN






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox