PRGDB00063159 (enhanced disease resistance 2 protein)

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enhanced disease resistance 2 protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 332656411 (CP002687)
Gene Class Unknown
Domain Type
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana chromosome 4, complete sequence.

DNA Sequence

GCAAATACAGCGGAAGAACAGCCAGAGAGGCTTATCGGTGCAGTTCGGGTTTCGCATATTGAGCTCTCTTCGGCTATAGTTCCGAATCTGGAGTCAGAATAAATTGACGTAGATATTGGTTCATCAACCGTTGCAAATGGAGTGCTCGGCCTCGTCATTGGCGTAATCACGTCTCTGGTTGTGGAAATGGCTTTCCTTGTACAGGGCTCATGGATAGTACGGCAAAGTGTGGGAAGCACCCCTTGTCTCCTTGGGAAAGCAGTGGACTGCAACTACATCCGTGGCCCGACATACTTAGAAGTTCCAGGATCAACACACTACAGTATGGTGTTTTATTTCGTGATGAAAGAACTAGTACCTGGGTCCCTCTTGCAACGGTTTGTGGATGGTGATGATGAATTCCGAAATAGTAGGCTAAAGCTTATACCATTAGTTCCTAAGGTTGCTGCAGAAAAAGGTCTATTCTCAATGGTGGTAAATGTTCAAATACCTGCTGGCAAGCATCTTATGGATCTCGTTGCTGTTGACTGGTTCAAAGACAGTAAAAGAATAGATCATGTTGCTAGACGCAAAGGCTGCGCAGCACAAAAGAAGAACCTGCTCACAACATTGATCTGTCATGCTTCTCGGGTAACCTAAAGCGCAATGAAAACGAAAACGCCCGTAACTGCTGGAGGATTTCTGATGGTAACAACTTCAAAGTTCGGGGCAAGAATTTCGGTCAAGAGAAAAGAAAGCCTGAAACAAGTAAACCAGAGACCGATGTCAAGAGACCAGGTGTGCACCCTATCAGTTTGCGGGAATGGTTTTCACAGACAGATGAGAGAGGTGTTCATACCCGGATCCCTGTCATGGTTAATATGGCATCATCTTCCTTGAGCTTGACTAAGAGTGGGAAGTCTCTGCATAAGTCTGCCTTTTCTCTTGATCAAACAAATTCCGTTAACAGAAACTCCTTGCTTATGGATGAAGACTCGGATGATGATGATGAATTTCAGATTGCTGAATCAGAACAAGAGGTGGAGGATATAATATTTCCCCACTAAAGCCTCGGAATGGGAGGCCTAGAACGCAAGTGCAACATCTAATACAAATTGATCTAAAAGGGTGGGGTGCAGGCTATCTTCCAGCATTTCAACAACATTGTCTTCTTCAAATGCTGAATAGTGTTGCTGTTGTGTTGTTCCGTTCTAGGGAGCATGAGAATTGTGGTCCACAACCTGGATGTGTTCGGGCTCATCTTGAGAGATTGTGTGGCCTCGCGACCTCTGTTATGTCCGCTATTGGCGCCGTAATGATGATGGGAGTTATGGTGGGACTGCAGCTTTCAGTTTGGTAGCTTAGTGGAAGAGGTCGATGGTCACACAGCAGTCCTCTATCACAGACTTCTGCTCGACTGCCAAGAAGCTGTAGCAGGGCAATGAAGGCTGTTGGTGTAGTGGAGGCAACATGTGAGGAAATATTCGAGCTTCTGATGAGCATGGACGGCACTCGTTATGAGTCTTCGGATTTTTGAAGAGCTTCTTGAAGTTGATTACCTTGTCCTCCAGAATCTGTACTTGACTGGACCAAAGAATTTGATGCAGAGTTGGCGAACCAGAATTCCGACAACCAAGCATTTTCCAGGAAACACTGGCGTCTCCTTCAGTGCCAAAATGATTTAGTGCGGCAGAGGATGAAGAGGACTCTCGACGTAGCTTAATGAGGAGGACAACTATTGGAAATGCATCAAGAGTCCCAAGTTCCAAATGGTCAGCAGTATGTTTCATTTGAATATAAATCTGGAATGGATACTGGAAGGACTGCTTCATCTTCAGACCATGAAAGCCAATGGCAGCGTTCAACATTCAGGAAGCACTAATGTGGAAGGAAAAAATTGAGTCTGTTATAGACCAGATGGTTTACGTTTTGTCTGTCTATAACAAAAAAGAAAAGAGTCATAGAATTACGGTTCCTATCAAGACCATGTTAATTGATGGTAACTGCAGAGTTGAGGATCGAGGCTTGAAAACACATCATGGACATATGTCTAAGGTAGTGTACGAAGGATGGATGGTTAGGTATGGAAGGAGGAAGATCGGACGATCGTATATTCATATGAGGTATTTTGTGTTGGAGCCTCGTCTTTTGGCGTATTACAAGAAGAAACCTCAGGATTATCAG


Protein sequences

Name Description Sequence
enhanced disease resistance 2 protein enhanced disease resistance 2 protein [Arabidopsis thaliana].

MSKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVPNGQQYVSFEYKSGMDTGRTASSSDHESQFSAAEDEEDSRRSLMRRTTIGNGPPESVLDWTKEFDAELANQNSDNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWIVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGCVRAHLESGGYNISPLKPRNGRPRTQVQHLIQIDLKGWGAGYLPAFQQHCLLQMLNSVAGLREWFSQTDERGVHTRIPVMVNMASSSLSLTKSGKSLHKSAFSLDQTNSVNRNSLLMDEDSDDDDEFQIAESEQEPETSKPETDVKRPGVHPIKEEPAHNIDLSCFSGNLKRNENENARNCWRISDGNNFKVRGKNFGQEKRKIPAGKHLMDLVAVDWFKDSKRIDHVARRKGCAAQVAAEKGLFSMVVNVQVPGSTHYSMVFYFVMKELVPGSLLQRFVDGDDEFRNSRLKLIPLVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPTYLEIDVDIGSSTVANGVLGLVIGVITSLVVEMAFLVQANTAEEQPERLIGAVRVSHIELSSAIVPNLESE

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR12136:SF13
1-402 PTHR12136:SF13,SUBFAMILY NOT NAMED

MSKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVPNGQQYVSFEYKSGMDTGRTASSSDHESQFSAAEDEEDSRRSLMRRTTIGNGPPESVLDWTKEFDAELANQNSDNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWIVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGCVRAHLESGGYNISPLKPRNGRPRTQVQHLIQIDLKGWGAGYLPAFQQHCLLQMLNSVAGLREWFSQTDERGVHTRIPVM

HMMPanther: PTHR12136
1-402 PTHR12136,STEROIDOGENIC ACUTE REGULATORY PROTEIN (STAR)

MSKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVPNGQQYVSFEYKSGMDTGRTASSSDHESQFSAAEDEEDSRRSLMRRTTIGNGPPESVLDWTKEFDAELANQNSDNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWIVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGCVRAHLESGGYNISPLKPRNGRPRTQVQHLIQIDLKGWGAGYLPAFQQHCLLQMLNSVAGLREWFSQTDERGVHTRIPVM

Gene3D: G3DSA:2.30.29.30
IPR011993
2-118 PH_type
Pleckstrin homology-like domain

SKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVP

ProfileScan: PS50003
IPR001849
3-110 PH_DOMAIN
Pleckstrin homology domain

KVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVID

superfamily: SSF50729
3-118 SSF50729

KVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVP

HMMSmart: SM00233
IPR001849
4-112 PH
Pleckstrin homology domain

VVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQH

HMMSmart: SM00234
IPR002913
180-389 START
Lipid-binding START

EFDAELANQNSDNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWIVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGCVRAHLESGGYNISPLKPRNGRPRTQVQHLIQIDLKGWGAGYLPAFQQHCLLQMLNSVAGLREWFSQ

superfamily: SSF55961
183-390 SSF55961

AELANQNSDNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWIVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGCVRAHLESGGYNISPLKPRNGRPRTQVQHLIQIDLKGWGAGYLPAFQQHCLLQMLNSVAGLREWFSQT

Gene3D: G3DSA:3.30.530.20
IPR023393
188-391 G3DSA:3.30.530.20
START-like domain

QNSDNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWIVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGCVRAHLESGGYNISPLKPRNGRPRTQVQHLIQIDLKGWGAGYLPAFQQHCLLQMLNSVAGLREWFSQTD

ProfileScan: PS50848
IPR002913
200-369 START
Lipid-binding START

WRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWIVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGCVRAHLESGGYNISPLKPRNGRPRTQVQHLIQIDLKGWGAGYLPAFQ

HMMPfam: PF01852
IPR002913
225-361 START
Lipid-binding START

CSRAMKAVGVVEATCEEIFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWIVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGCVRAHLESGGYNISPLKPRNGRPRTQVQHLIQIDLKGWG

HMMPfam: PF07059
IPR009769
504-708 DUF1336
Domain of unknown function DUF1336

WRISDGNNFKVRGKNFGQEKRKIPAGKHLMDLVAVDWFKDSKRIDHVARRKGCAAQVAAEKGLFSMVVNVQVPGSTHYSMVFYFVMKELVPGSLLQRFVDGDDEFRNSRLKLIPLVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPTYLEIDVDIGSSTVANGVLGLVIGVITSLVVEMAFLVQANTAEEQPERLIGAVRVSHIE


List of References

K Mayer, C Schüller, R Wambutt, G Murphy, G Volckaert, T Pohl, A Düsterhöft, W Stiekema, K D Entian, N Terryn, B Harris, W Ansorge, P Brandt, L Grivell, M Rieger, M Weichselgartner, V de Simone, B Obermaier, R Mache, M Müller, M Kreis, M Delseny, P Puigdomenech, M Watson, T Schmidtheini, B Reichert, D Portatelle, M Perez-Alonso, M Boutry, I Bancroft, P Vos, J Hoheisel, W Zimmermann, H Wedler, P Ridley, S A Langham, B McCullagh, L Bilham, J Robben, J Van der Schueren, B Grymonprez, Y J Chuang, F Vandenbussche, M Braeken, I Weltjens, M Voet, I Bastiaens, R Aert, E Defoor, T Weitzenegger, G Bothe, U Ramsperger, H Hilbert, M Braun, E Holzer, A Brandt, S Peters, M van Staveren, W Dirske, P Mooijman, R Klein Lankhorst, M Rose, J Hauf, P Kötter, S Berneiser, S Hempel, M Feldpausch, S Lamberth, H Van den Daele, A De Keyser, C Buysshaert, J Gielen, R Villarroel, R De Clercq, M Van Montagu, J Rogers, A Cronin, M Quail, S Bray-Allen, L Clark, J Doggett, S Hall, M Kay, N Lennard, K McLay, R Mayes, A Pettett, M A Rajandream, M Lyne, V Benes, S Rechmann, D Borkova, H Blöcker, M Scharfe, M Grimm, T H Löhnert, S Dose, M de Haan, A Maarse, M Schäfer, S Müller-Auer, C Gabel, M Fuchs, B Fartmann, K Granderath, D Dauner, A Herzl, S Neumann, A Argiriou, D Vitale, R Liguori, E Piravandi, O Massenet, F Quigley, G Clabauld, A Mündlein, R Felber, S Schnabl, R Hiller, W Schmidt, A Lecharny, S Aubourg, F Chefdor, R Cooke, C Berger, A Montfort, E Casacuberta, T Gibbons, N Weber, M Vandenbol, M Bargues, J Terol, A Torres, A Perez-Perez, B Purnelle, E Bent, S Johnson, D Tacon, T Jesse, L Heijnen, S Schwarz, P Scholler, S Heber, P Francs, C Bielke, D Frishman, D Haase, K Lemcke, H W Mewes, S Stocker, P Zaccaria, M Bevan, R K Wilson, M de la Bastide, K Habermann, L Parnell, N Dedhia, L Gnoj, K Schutz, E Huang, L Spiegel, M Sehkon, J Murray, P Sheet, M Cordes, J Abu-Threideh, T Stoneking, J Kalicki, T Graves, G Harmon, J Edwards, P Latreille, L Courtney, J Cloud, A Abbott, K Scott, D Johnson, P Minx, D Bentley, B Fulton, N Miller, T Greco, K Kemp, J Kramer, L Fulton, E Mardis, M Dante, K Pepin, L Hillier, J Nelson, J Spieth, E Ryan, S Andrews, C Geisel, D Layman, H Du, J Ali, A Berghoff, K Jones, K Drone, M Cotton, C Joshu, B Antonoiu, M Zidanic, C Strong, H Sun, B Lamar, C Yordan, P Ma, J Zhong, R Preston, D Vil, M Shekher, A Matero, R Shah, I K Swaby, A O'Shaughnessy, M Rodriguez, J Hoffmann, S Till, S Granat, N Shohdy, A Hasegawa, A Hameed, M Lodhi, A Johnson, E Chen, M Marra, R Martienssen, W R McCombie
Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.
Nature: 1999, 402(6763);769-77
PubMed:10617198 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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