PRGDB00063215 (NBS-LRR resistance protein)

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NBS-LRR resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 258642426 (GQ480427)
Gene Class CNL
Domain Type NBS, LRR, Others
Gene Species Hevea brasiliensis

Comment?

Hevea brasiliensis clone HevRTRGA46 NBS-LRR resistance protein mRNA, partial cds.

DNA Sequence

GGCGTGGGGAAAACCACCCTTGCCAAGCTGGTATATAATCGGTTTGATGTCAAGCGACACTTCGATTGTTTGTCTTGGGCTTTCATATCTCAACAATTCTCCCCAGGAGATGTTTTTTCGGGAATCCTGAGAGAAGTTGGAGCTAAATGGGAGAATATGGGAAGCATGAAAGAGGAAGATTTGATCAGAACACTCAAAGATGTATTGAAGGAGAAGCGATACTTGGTGGTCCTTGATGATATTTGGAAAGAAGAGGCATGGGATAGTTTAAAACGTGCTTTCCCAAAAGGGAAGAAGGGAAGTAAAGTTTTGTTCACTACCCGTGTCAAAGAAGTTGCTTCGTATGCTGATCCAAGGAGCTCTCCAGTGGAACCACCATTTTTGACGAATGAAGAGGGCTGGGAACTTCTCAGCCGGACAGCATTTCCAGAAGATATTGCAAGTGAGCAAGGTTATGCACCTGAATTCGAGAGAATAGGGAAGGAGATAGTGAGAAAATGCGGAGGACTTCCCCTCGCACTC


Protein sequences

Name Description Sequence
NBS-LRR resistance protein NBS-LRR resistance protein [Hevea brasiliensis].

GVGKTTLAKLVYNRFDVKRHFDCLSWAFISQQFSPGDVFSGILREVGAKWENMGSMKEEDLIRTLKDVLKEKRYLVVLDDIWKEEAWDSLKRAFPKGKKGSKVLFTTRVKEVASYADPRSSPVEPPFLTNEEGWELLSRTAFPEDIASEQGYAPEFERIGKEIVRKCGGLPLAL

Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.40.50.300
1-119 G3DSA:3.40.50.300

GVGKTTLAKLVYNRFDVKRHFDCLSWAFISQQFSPGDVFSGILREVGAKWENMGSMKEEDLIRTLKDVLKEKRYLVVLDDIWKEEAWDSLKRAFPKGKKGSKVLFTTRVKEVASYADPR

HMMPfam: PF00931
IPR002182
1-174 NB-ARC,NBS
NB-ARC

GVGKTTLAKLVYNRFDVKRHFDCLSWAFISQQFSPGDVFSGILREVGAKWENMGSMKEEDLIRTLKDVLKEKRYLVVLDDIWKEEAWDSLKRAFPKGKKGSKVLFTTRVKEVASYADPRSSPVEPPFLTNEEGWELLSRTAFPEDIASEQGYAPEFERIGKEIVRKCGGLPLAL

superfamily: SSF52540
1-174 SSF52540

GVGKTTLAKLVYNRFDVKRHFDCLSWAFISQQFSPGDVFSGILREVGAKWENMGSMKEEDLIRTLKDVLKEKRYLVVLDDIWKEEAWDSLKRAFPKGKKGSKVLFTTRVKEVASYADPRSSPVEPPFLTNEEGWELLSRTAFPEDIASEQGYAPEFERIGKEIVRKCGGLPLAL

HMMPanther: PTHR11017
1-174 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GVGKTTLAKLVYNRFDVKRHFDCLSWAFISQQFSPGDVFSGILREVGAKWENMGSMKEEDLIRTLKDVLKEKRYLVVLDDIWKEEAWDSLKRAFPKGKKGSKVLFTTRVKEVASYADPRSSPVEPPFLTNEEGWELLSRTAFPEDIASEQGYAPEFERIGKEIVRKCGGLPLAL

HMMPanther: PTHR11017:SF125
1-174 PTHR11017:SF125,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

GVGKTTLAKLVYNRFDVKRHFDCLSWAFISQQFSPGDVFSGILREVGAKWENMGSMKEEDLIRTLKDVLKEKRYLVVLDDIWKEEAWDSLKRAFPKGKKGSKVLFTTRVKEVASYADPRSSPVEPPFLTNEEGWELLSRTAFPEDIASEQGYAPEFERIGKEIVRKCGGLPLAL

FPrintScan: PR00364
IPR000767
68-82 DISEASERSIST
Disease resistance protein

VLKEKRYLVVLDDIW

FPrintScan: PR00364
IPR000767
167-174 DISEASERSIST
Disease resistance protein

CGGLPLAL






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Analyses

Blast

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