PRGDB00063249 (hypothetical protein)
| hypothetical protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 297849999 (XM_002892835) |
| Gene Class | NL |
| Domain Type | NBS, LRR |
| Gene Species | Arabidopsis lyrata subsp. lyrata |
DNA Sequence
ATGGCGCTTTCCATGTCCAAAAAAGATAAAAGCATCGCTGGATTCAAGTGGAAATGTGAAGCAAGAGGAGCTTTTTCAAGAGGTACAAATCAAAATGATAATTTACCACTTCCCTTCACTCTCAATCATTTTCCTACTGTTGAGATGGAAGTAAGATCTTTGGGAGCAGATGAGGCATGGGATTTCTTCTGCGAGAGAATTGGAGACACCTTGGAGAGTCACCCGGACATCCGTGAGCTCGCAAGGATAGTTGTTGAAAGATGCAGAGGCTCACCGCTCGCACTTAGTGTTATTGGCGTGACTATGACAGGCAAGACTTTGGTGCAAGAATGGCGGTATGCAATCGACACTTTGACTTTATCGGCGGCTAAGTTTTCAGAAAATAAATTTGGCAATATAGTGACCATGCCTACCCTGGTTCGTGAAATGGCCTTGTGGGTAGCATCAAATCTTGGGGAGGAGAAAGAAAACTTCATTGTGAAAGCCGTAGCAAAACTTAATCACACTCCAAATGTCAAGGATTGGAGAGGTGTGAGTAGGATCTCATTGTGGGGTAATCGGATCAAGGGTATAAGTTGCAGTCCAGATTGTCCCAAGCTTACAACCTTATTCCTCCAGTTCAATGGTCTGGGGAAGATCTCAAGTGGACTTTTTATGTTTATGCCTAATCTTGTGGTTTTGGATCTAACGGCAAACATTGGCCTCGAGTTGCCTGAAGAGATTTCGAGACTGGTCTCTTTGCAGTATCTCAACTTATCACATACAAAGATAAAGGAACTTCCTCGGGGTTTAAAAGAGCTAAGGAAACTTATACACCTGAACCTGGAGTTTACTGGATGGCTTAAAGGAATTGCTGGGATATCAAGTTTATCAAATCTGCAAGTTCTAAAACTGTATTGTTCCGTCGAATTAAATATGGAACTGGTGGAGGAGTTACAGCTCCTGAAGCATTTAAAAGTTTTGACCGTCTCCGGGGGTGATGCCTATGTCTGGGAAAGATTTATGAGCATTCCCAGATTGGCAAGTTGCACTCGCAGTGCAACTCTTACGCACTGTGAAGCAGGAGCAGATGGAATATCGATTGCCGCGACCTCAAGTAGGCTTAGCGTCCTCCAGATATATGAGTCAAACATAAAGGAGATAAAGATTGATCAGAAAGACGATGATCACTGCAAGCAATAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| hypothetical protein | hypothetical protein ARALYDRAFT_334861 [Arabidopsis lyrata subsp. lyrata]. | MALSMSKKDKSIAGFKWKCEARGAFSRGTNQNDNLPLPFTLNHFPTVEMEVRSLGADEAWDFFCERIGDTLESHPDIRELARIVVERCRGSPLALSVIGVTMTGKTLVQEWRYAIDTLTLSAAKFSENKFGNIVTMPTLVREMALWVASNLGEEKENFIVKAVAKLNHTPNVKDWRGVSRISLWGNRIKGISCSPDCPKLTTLFLQFNGLGKISSGLFMFMPNLVVLDLTANIGLELPEEISRLVSLQYLNLSHTKIKELPRGLKELRKLIHLNLEFTGWLKGIAGISSLSNLQVLKLYCSVELNMELVEELQLLKHLKVLTVSGGDAYVWERFMSIPRLASCTRSATLTHCEAGADGISIAATSSRLSVLQIYESNIKEIKIDQKDDDHCKQ |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPfam: PF00931 IPR002182
|
48-184 | NB-ARC,NBS NB-ARC
|
EMEVRSLGADEAWDFFCERIGDTLESHPDIRELARIVVERCRGSPLALSVIGVTMTGKTLVQEWRYAIDTLTLSAAKFSENKFGNIVTMPTLVREMALWVASNLGEEKENFIVKAVAKLNHTPNVKDWRGVSRISLW |
| superfamily: SSF52058 | 135-381 | SSF52058,LRR | TMPTLVREMALWVASNLGEEKENFIVKAVAKLNHTPNVKDWRGVSRISLWGNRIKGISCSPDCPKLTTLFLQFNGLGKISSGLFMFMPNLVVLDLTANIGLELPEEISRLVSLQYLNLSHTKIKELPRGLKELRKLIHLNLEFTGWLKGIAGISSLSNLQVLKLYCSVELNMELVEELQLLKHLKVLTVSGGDAYVWERFMSIPRLASCTRSATLTHCEAGADGISIAATSSRLSVLQIYESNIKEI |
| Gene3D: G3DSA:3.80.10.10 | 172-325 | G3DSA:3.80.10.10 | VKDWRGVSRISLWGNRIKGISCSPDCPKLTTLFLQFNGLGKISSGLFMFMPNLVVLDLTANIGLELPEEISRLVSLQYLNLSHTKIKELPRGLKELRKLIHLNLEFTGWLKGIAGISSLSNLQVLKLYCSVELNMELVEELQLLKHLKVLTVSG |
| HMMPanther: PTHR23155:SF108 | 180-381 | PTHR23155:SF108,SUBFAMILY NOT NAMED | RISLWGNRIKGISCSPDCPKLTTLFLQFNGLGKISSGLFMFMPNLVVLDLTANIGLELPEEISRLVSLQYLNLSHTKIKELPRGLKELRKLIHLNLEFTGWLKGIAGISSLSNLQVLKLYCSVELNMELVEELQLLKHLKVLTVSGGDAYVWERFMSIPRLASCTRSATLTHCEAGADGISIAATSSRLSVLQIYESNIKEI |
| HMMPanther: PTHR23155 | 180-381 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | RISLWGNRIKGISCSPDCPKLTTLFLQFNGLGKISSGLFMFMPNLVVLDLTANIGLELPEEISRLVSLQYLNLSHTKIKELPRGLKELRKLIHLNLEFTGWLKGIAGISSLSNLQVLKLYCSVELNMELVEELQLLKHLKVLTVSGGDAYVWERFMSIPRLASCTRSATLTHCEAGADGISIAATSSRLSVLQIYESNIKEI |
| ProfileScan: PS51450 IPR001611
|
199-220 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
KLTTLFLQFNGLGKISSGLFMF |
| HMMPfam: PF13855 | 222-277 | LRR_8,Leucine rich repeat | PNLVVLDLTANIGLELPEEISRLVSLQYLNLSHTKIKELPRGLKELRKLIHLNLEF |
| ProfileScan: PS51450 IPR001611
|
223-244 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLVVLDLTANIGLELPEEISRL |
| ProfileScan: PS51450 IPR001611
|
246-268 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLQYLNLSHTKIKELPRGLKELR |
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