PRGDB00063361 (hypothetical protein)

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hypothetical protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 297335169 (GL348713)
Gene Class CNL
Domain Type LRR, NBS
Gene Species Arabidopsis lyrata subsp. lyrata

Comment?

Arabidopsis lyrata subsp. lyrata unplaced genomic scaffold ARALYscaffold_1, whole genome shotgun sequence.

DNA Sequence

ATGAAGGAGATAGAGATAGAGAGGGAAACATCATCTTGGAACAAAAGTCCAGCAAGTCCATGCTTCTTTAGCCTCTTCACTGTCTTAATAAGTAACTGCGATGGTCTAAAGGATTTGACGTGGCTGTTGTTCGCTCCTAACCTTACCAATCTTGAGGTTTCTTTCTCAGATCGACTAGAGGATATAATAAGCGAGGAGAAAGCTTTGAACAGTGTCACAGGTGATGAGGCAGGTATGATCATCCCTTTTCAAAAACTAGAAAAGCTACAGCTGTGGAATTTACCTAAGCTGAAGAGCATCTACTGGAATACTCTGCCTTTTCCATGTTTGAGGGAAATCGACATAAGAAAGTGTCCGAACCTGAGGAAGCTTGCACTGGATTCACAAAATGTCGGTAGGGTTGAAGAACTTGTTATAAACTACAGAGAGAAAGAATGGATAGAAGAGGTTGAATGGGAAGACGAAGCCACTCAGCTCCGTTTCCTACCTTCCTCCAAGTTGGTTTAA


Protein sequences

Name Description Sequence
hypothetical protein hypothetical protein ARALYDRAFT_888553 [Arabidopsis lyrata subsp. lyrata].

MKEIEIERETSSWNKSPASPCFFSLFTVLISNCDGLKDLTWLLFAPNLTNLEVSFSDRLEDIISEEKALNSVTGDEAGMIIPFQKLEKLQLWNLPKLKSIYWNTLPFPCLREIDIRKCPNLRKLALDSQNVGRVEELVINYREKEWIEEVEWEDEATQLRFLPSSKLV

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF111
1-168 PTHR23155:SF111,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

MKEIEIERETSSWNKSPASPCFFSLFTVLISNCDGLKDLTWLLFAPNLTNLEVSFSDRLEDIISEEKALNSVTGDEAGMIIPFQKLEKLQLWNLPKLKSIYWNTLPFPCLREIDIRKCPNLRKLALDSQNVGRVEELVINYREKEWIEEVEWEDEATQLRFLPSSKLV

HMMPanther: PTHR23155
1-168 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MKEIEIERETSSWNKSPASPCFFSLFTVLISNCDGLKDLTWLLFAPNLTNLEVSFSDRLEDIISEEKALNSVTGDEAGMIIPFQKLEKLQLWNLPKLKSIYWNTLPFPCLREIDIRKCPNLRKLALDSQNVGRVEELVINYREKEWIEEVEWEDEATQLRFLPSSKLV

superfamily: SSF52058
21-163 SSF52058,LRR

CFFSLFTVLISNCDGLKDLTWLLFAPNLTNLEVSFSDRLEDIISEEKALNSVTGDEAGMIIPFQKLEKLQLWNLPKLKSIYWNTLPFPCLREIDIRKCPNLRKLALDSQNVGRVEELVINYREKEWIEEVEWEDEATQLRFLP

Gene3D: G3DSA:3.80.10.10
26-127 G3DSA:3.80.10.10

FTVLISNCDGLKDLTWLLFAPNLTNLEVSFSDRLEDIISEEKALNSVTGDEAGMIIPFQKLEKLQLWNLPKLKSIYWNTLPFPCLREIDIRKCPNLRKLALD






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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