PRGDB00063363 (hypothetical protein)
hypothetical protein | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 297335169 (GL348713) |
Gene Class | Unknown |
Domain Type | LRR |
Gene Species | Arabidopsis lyrata subsp. lyrata |
DNA Sequence
ATGAACTCTTACTCTTTCACTCTCTTCATCTTTGCCGCCATTATCTTTCTCCGGTGTTCAAGTTCGACCAAAGCTGCCACTTGTCACCCTGATGATGAGGCGGGTCTTTTAGCTTTCAAATCGGGTATAACCCAAGATCCTTTGGGCCATCTGAACTCGTGGAAGAAAGGTACTGATTGCTGCTCATGGGTGGCTGTTACTTGCACTAGGGGCAATCGCGTCACTGAACTAAACCTAGACGGATCTAGCGTTCTTGGCGGAATCTTTCTCTCTGGCACTATCTCCCCGTTGTTGACCAAACTTCAACACCTTGAGGTGATTTCCTTAATCTCTTTTCGAAAGATGACTGGCTCTTTTCCTCTGTTTCTTTTTCGATTACCAAAGCTAAGGTACCTTAACATCATGAATAATCATCTCCCCGGTCCACTTCCAGCCAACATCGGCACGCTACACCAGTTGGAAGACCTAATTCTCGAGGGAAACCAGTTCACTGGTCAGATCCCGAGTTCCATATCCAATTTGACTAGGTTATTTCGGCTCAATCTTGGCGGCAACCGCCTCTCTGGCACCATCTCAGATATATTTAAACCCATGACGAACCTCCAACATCTTGATCTCTCCCGCAACGGATTCTCCGGGAAACTTCCTCCATCGTTTTCATCGCTTGCACCGACCCTCAAATATCTCGATCTGAGCCAGAACAATCTCTCGGGAACGATTCCGGACTATTTATCAAGATTCGAGACGCTTTCCACATTGGTTCTCTCCAAGAATCAGTACTCGGGGGTTGTGCCAACGAGTTTCGCTAATTTAACCAGTATTTACTATCTCGATCTCTCCCACAATCTCTTAACCGGTCCATTCCATGCCTTGAAGAGTAGCATCGGCTATCTTGATCTATCGTACAACCAATTTAACCTGAAAACCATTCCGGAATGGGTGACCTCGTCGACGAGTTTGTACTCACTAAAGTTGGCTAAATGCAGTATCAAGATGAACTTAAGCGATTGGAGGCCAGTGAAGACCAAATTGTTCAATAACATCGATCTGTCCGAAAACGAGTTCTCAGGGAGTCCAACATGGTTCCTAAACAAGACGGAGGATCTATTGGAGTTCCAGGCGTCGGGAAACAAACTCCAATTTGACATGGGGAAGTTGAGTTTCGCAAAGTCACTTAGAATCTTGGACCTATCAAGGAACTTGGTATTTGGGAAGGTGCCATGGACAGTGGCTAAACTGAAGAAACTAAATTTGAGTCAAAACCATCTTTGTGGAAAGCTTCCGGTGACAAAGTTCCCAGCTAGCGCGTTTGCGGGTAACGATTGTCTTTGTGGCTCTCCACTTTCTCCTTGTAAAGCTTAG
Protein sequences
Name | Description | Sequence |
---|---|---|
hypothetical protein | hypothetical protein ARALYDRAFT_890947 [Arabidopsis lyrata subsp. lyrata]. | MNSYSFTLFIFAAIIFLRCSSSTKAATCHPDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTCTRGNRVTELNLDGSSVLGGIFLSGTISPLLTKLQHLEVISLISFRKMTGSFPLFLFRLPKLRYLNIMNNHLPGPLPANIGTLHQLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRNGFSGKLPPSFSSLAPTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLLTGPFHALKSSIGYLDLSYNQFNLKTIPEWVTSSTSLYSLKLAKCSIKMNLSDWRPVKTKLFNNIDLSENEFSGSPTWFLNKTEDLLEFQASGNKLQFDMGKLSFAKSLRILDLSRNLVFGKVPWTVAKLKKLNLSQNHLCGKLPVTKFPASAFAGNDCLCGSPLSPCKA |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR24420 | 1-450 | PTHR24420,FAMILY NOT NAMED | MNSYSFTLFIFAAIIFLRCSSSTKAATCHPDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTCTRGNRVTELNLDGSSVLGGIFLSGTISPLLTKLQHLEVISLISFRKMTGSFPLFLFRLPKLRYLNIMNNHLPGPLPANIGTLHQLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRNGFSGKLPPSFSSLAPTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLLTGPFHALKSSIGYLDLSYNQFNLKTIPEWVTSSTSLYSLKLAKCSIKMNLSDWRPVKTKLFNNIDLSENEFSGSPTWFLNKTEDLLEFQASGNKLQFDMGKLSFAKSLRILDLSRNLVFGKVPWTVAKLKKLNLSQNHLCGKLPVTKFPASAFAGNDCLCGSPLSP |
HMMPanther: PTHR24420:SF510 | 1-450 | PTHR24420:SF510 | MNSYSFTLFIFAAIIFLRCSSSTKAATCHPDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTCTRGNRVTELNLDGSSVLGGIFLSGTISPLLTKLQHLEVISLISFRKMTGSFPLFLFRLPKLRYLNIMNNHLPGPLPANIGTLHQLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRNGFSGKLPPSFSSLAPTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLLTGPFHALKSSIGYLDLSYNQFNLKTIPEWVTSSTSLYSLKLAKCSIKMNLSDWRPVKTKLFNNIDLSENEFSGSPTWFLNKTEDLLEFQASGNKLQFDMGKLSFAKSLRILDLSRNLVFGKVPWTVAKLKKLNLSQNHLCGKLPVTKFPASAFAGNDCLCGSPLSP |
superfamily: SSF52058 | 26-340 | SSF52058,LRR | ATCHPDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTCTRGNRVTELNLDGSSVLGGIFLSGTISPLLTKLQHLEVISLISFRKMTGSFPLFLFRLPKLRYLNIMNNHLPGPLPANIGTLHQLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRNGFSGKLPPSFSSLAPTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLLTGPFHALKSSIGYLDLSYNQFNLKTIPEWVTSSTSLYSLKLAKCSIKMNLSDWRPV |
Gene3D: G3DSA:3.80.10.10 | 27-319 | G3DSA:3.80.10.10 | TCHPDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTCTRGNRVTELNLDGSSVLGGIFLSGTISPLLTKLQHLEVISLISFRKMTGSFPLFLFRLPKLRYLNIMNNHLPGPLPANIGTLHQLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRNGFSGKLPPSFSSLAPTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLLTGPFHALKSSIGYLDLSYNQFNLKTIPEWVTSSTS |
HMMPfam: PF08263 IPR013210
|
30-68 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
PDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTC |
HMMPfam: PF13855 | 152-209 | LRR_8,Leucine rich repeat | QLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRN |
HMMPfam: PF13855 | 224-284 | LRR_8,Leucine rich repeat | PTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLL |
FPrintScan: PR00019 | 226-239 | LEURICHRPT,Leucine-rich repeat signature | LKYLDLSQNNLSGT |
FPrintScan: PR00019 | 271-284 | LEURICHRPT,Leucine-rich repeat signature | LTSIYYLDLSHNLL |
superfamily: SSF52058 | 293-428 | SSF52058,LRR | SSIGYLDLSYNQFNLKTIPEWVTSSTSLYSLKLAKCSIKMNLSDWRPVKTKLFNNIDLSENEFSGSPTWFLNKTEDLLEFQASGNKLQFDMGKLSFAKSLRILDLSRNLVFGKVPWTVAKLKKLNLSQNHLCGKLP |
Gene3D: G3DSA:3.80.10.10 | 320-430 | G3DSA:3.80.10.10 | LYSLKLAKCSIKMNLSDWRPVKTKLFNNIDLSENEFSGSPTWFLNKTEDLLEFQASGNKLQFDMGKLSFAKSLRILDLSRNLVFGKVPWTVAKLKKLNLSQNHLCGKLPVT |
HMMPfam: PF00560 IPR001611
|
412-432 | LRR_1 Leucine-rich repeat
|
KLKKLNLSQNHLCGKLPVTKF |
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