PRGDB00063363 (hypothetical protein)
| hypothetical protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 297335169 (GL348713) |
| Gene Class | Unknown |
| Domain Type | LRR |
| Gene Species | Arabidopsis lyrata subsp. lyrata |
DNA Sequence
ATGAACTCTTACTCTTTCACTCTCTTCATCTTTGCCGCCATTATCTTTCTCCGGTGTTCAAGTTCGACCAAAGCTGCCACTTGTCACCCTGATGATGAGGCGGGTCTTTTAGCTTTCAAATCGGGTATAACCCAAGATCCTTTGGGCCATCTGAACTCGTGGAAGAAAGGTACTGATTGCTGCTCATGGGTGGCTGTTACTTGCACTAGGGGCAATCGCGTCACTGAACTAAACCTAGACGGATCTAGCGTTCTTGGCGGAATCTTTCTCTCTGGCACTATCTCCCCGTTGTTGACCAAACTTCAACACCTTGAGGTGATTTCCTTAATCTCTTTTCGAAAGATGACTGGCTCTTTTCCTCTGTTTCTTTTTCGATTACCAAAGCTAAGGTACCTTAACATCATGAATAATCATCTCCCCGGTCCACTTCCAGCCAACATCGGCACGCTACACCAGTTGGAAGACCTAATTCTCGAGGGAAACCAGTTCACTGGTCAGATCCCGAGTTCCATATCCAATTTGACTAGGTTATTTCGGCTCAATCTTGGCGGCAACCGCCTCTCTGGCACCATCTCAGATATATTTAAACCCATGACGAACCTCCAACATCTTGATCTCTCCCGCAACGGATTCTCCGGGAAACTTCCTCCATCGTTTTCATCGCTTGCACCGACCCTCAAATATCTCGATCTGAGCCAGAACAATCTCTCGGGAACGATTCCGGACTATTTATCAAGATTCGAGACGCTTTCCACATTGGTTCTCTCCAAGAATCAGTACTCGGGGGTTGTGCCAACGAGTTTCGCTAATTTAACCAGTATTTACTATCTCGATCTCTCCCACAATCTCTTAACCGGTCCATTCCATGCCTTGAAGAGTAGCATCGGCTATCTTGATCTATCGTACAACCAATTTAACCTGAAAACCATTCCGGAATGGGTGACCTCGTCGACGAGTTTGTACTCACTAAAGTTGGCTAAATGCAGTATCAAGATGAACTTAAGCGATTGGAGGCCAGTGAAGACCAAATTGTTCAATAACATCGATCTGTCCGAAAACGAGTTCTCAGGGAGTCCAACATGGTTCCTAAACAAGACGGAGGATCTATTGGAGTTCCAGGCGTCGGGAAACAAACTCCAATTTGACATGGGGAAGTTGAGTTTCGCAAAGTCACTTAGAATCTTGGACCTATCAAGGAACTTGGTATTTGGGAAGGTGCCATGGACAGTGGCTAAACTGAAGAAACTAAATTTGAGTCAAAACCATCTTTGTGGAAAGCTTCCGGTGACAAAGTTCCCAGCTAGCGCGTTTGCGGGTAACGATTGTCTTTGTGGCTCTCCACTTTCTCCTTGTAAAGCTTAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| hypothetical protein | hypothetical protein ARALYDRAFT_890947 [Arabidopsis lyrata subsp. lyrata]. | MNSYSFTLFIFAAIIFLRCSSSTKAATCHPDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTCTRGNRVTELNLDGSSVLGGIFLSGTISPLLTKLQHLEVISLISFRKMTGSFPLFLFRLPKLRYLNIMNNHLPGPLPANIGTLHQLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRNGFSGKLPPSFSSLAPTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLLTGPFHALKSSIGYLDLSYNQFNLKTIPEWVTSSTSLYSLKLAKCSIKMNLSDWRPVKTKLFNNIDLSENEFSGSPTWFLNKTEDLLEFQASGNKLQFDMGKLSFAKSLRILDLSRNLVFGKVPWTVAKLKKLNLSQNHLCGKLPVTKFPASAFAGNDCLCGSPLSPCKA |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420 | 1-450 | PTHR24420,FAMILY NOT NAMED | MNSYSFTLFIFAAIIFLRCSSSTKAATCHPDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTCTRGNRVTELNLDGSSVLGGIFLSGTISPLLTKLQHLEVISLISFRKMTGSFPLFLFRLPKLRYLNIMNNHLPGPLPANIGTLHQLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRNGFSGKLPPSFSSLAPTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLLTGPFHALKSSIGYLDLSYNQFNLKTIPEWVTSSTSLYSLKLAKCSIKMNLSDWRPVKTKLFNNIDLSENEFSGSPTWFLNKTEDLLEFQASGNKLQFDMGKLSFAKSLRILDLSRNLVFGKVPWTVAKLKKLNLSQNHLCGKLPVTKFPASAFAGNDCLCGSPLSP |
| HMMPanther: PTHR24420:SF510 | 1-450 | PTHR24420:SF510 | MNSYSFTLFIFAAIIFLRCSSSTKAATCHPDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTCTRGNRVTELNLDGSSVLGGIFLSGTISPLLTKLQHLEVISLISFRKMTGSFPLFLFRLPKLRYLNIMNNHLPGPLPANIGTLHQLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRNGFSGKLPPSFSSLAPTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLLTGPFHALKSSIGYLDLSYNQFNLKTIPEWVTSSTSLYSLKLAKCSIKMNLSDWRPVKTKLFNNIDLSENEFSGSPTWFLNKTEDLLEFQASGNKLQFDMGKLSFAKSLRILDLSRNLVFGKVPWTVAKLKKLNLSQNHLCGKLPVTKFPASAFAGNDCLCGSPLSP |
| superfamily: SSF52058 | 26-340 | SSF52058,LRR | ATCHPDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTCTRGNRVTELNLDGSSVLGGIFLSGTISPLLTKLQHLEVISLISFRKMTGSFPLFLFRLPKLRYLNIMNNHLPGPLPANIGTLHQLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRNGFSGKLPPSFSSLAPTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLLTGPFHALKSSIGYLDLSYNQFNLKTIPEWVTSSTSLYSLKLAKCSIKMNLSDWRPV |
| Gene3D: G3DSA:3.80.10.10 | 27-319 | G3DSA:3.80.10.10 | TCHPDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTCTRGNRVTELNLDGSSVLGGIFLSGTISPLLTKLQHLEVISLISFRKMTGSFPLFLFRLPKLRYLNIMNNHLPGPLPANIGTLHQLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRNGFSGKLPPSFSSLAPTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLLTGPFHALKSSIGYLDLSYNQFNLKTIPEWVTSSTS |
| HMMPfam: PF08263 IPR013210
|
30-68 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
PDDEAGLLAFKSGITQDPLGHLNSWKKGTDCCSWVAVTC |
| HMMPfam: PF13855 | 152-209 | LRR_8,Leucine rich repeat | QLEDLILEGNQFTGQIPSSISNLTRLFRLNLGGNRLSGTISDIFKPMTNLQHLDLSRN |
| HMMPfam: PF13855 | 224-284 | LRR_8,Leucine rich repeat | PTLKYLDLSQNNLSGTIPDYLSRFETLSTLVLSKNQYSGVVPTSFANLTSIYYLDLSHNLL |
| FPrintScan: PR00019 | 226-239 | LEURICHRPT,Leucine-rich repeat signature | LKYLDLSQNNLSGT |
| FPrintScan: PR00019 | 271-284 | LEURICHRPT,Leucine-rich repeat signature | LTSIYYLDLSHNLL |
| superfamily: SSF52058 | 293-428 | SSF52058,LRR | SSIGYLDLSYNQFNLKTIPEWVTSSTSLYSLKLAKCSIKMNLSDWRPVKTKLFNNIDLSENEFSGSPTWFLNKTEDLLEFQASGNKLQFDMGKLSFAKSLRILDLSRNLVFGKVPWTVAKLKKLNLSQNHLCGKLP |
| Gene3D: G3DSA:3.80.10.10 | 320-430 | G3DSA:3.80.10.10 | LYSLKLAKCSIKMNLSDWRPVKTKLFNNIDLSENEFSGSPTWFLNKTEDLLEFQASGNKLQFDMGKLSFAKSLRILDLSRNLVFGKVPWTVAKLKKLNLSQNHLCGKLPVT |
| HMMPfam: PF00560 IPR001611
|
412-432 | LRR_1 Leucine-rich repeat
|
KLKKLNLSQNHLCGKLPVTKF |
List of Contributions
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