PRGDB00063364 (hypothetical protein)

hypothetical protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	297335169 (GL348713)
Gene Class	CNL
Domain Type	NBS, LRR, Others
Gene Species	Arabidopsis lyrata subsp. lyrata
	Comment?

Arabidopsis lyrata subsp. lyrata unplaced genomic scaffold ARALYscaffold_1, whole genome shotgun sequence.

DNA Sequence

ATGGGAAACTGTGTATCACTAGACGTATCTTGTGATCAAACGTTGCATCACGCTTGTGGCTGCTTATTTGGTGATGGGAATTACATTCACATGATGGAGGCAAATCTTGAGGCTCTGGAGAAAACTATGCAAGAACTTGAAGAGAGACGAGATGATCTTTTAAGAAGAGTTGTCATTGACGAAGATAAAGGTTTGCAACGGCTTGCTCAAGTCCAAGGATGGTTTTCAAGGGTACAAAGTGTTGAGTCTCAAGTCAAAGATTTGCTCGAGGCTAGATCAACTCAAACTAAAAGATTGTGTCTGCTTGGATATTGCTCTAAGAAGTGCATAACAAGCTGGCTTCTAGCTAAAGGAGTTTTCCAAGTGGTGGCTGAGAAAATCCCTGTACCAAAGGTGGACAAGAAGCATTTTCAAACCACAGTTGGTTTGGATTCAATGGTTGAGAAGGCATGGAACAGCCTCATGATCGGTGAACGAAGAACACTGGGTCTTTATGGTATGGGGGGAGTCGGAAAAACTACCCTCTTAGCTTGTATCAACAACAGATTCCTCGAAGTGGTGAATGAATTTGATGTTGTGATCTGGGTTGTGGTCTCTAAAGATTTGCAAATTGAGAGCATCCAGAATCAGATTTTAGGAAGACTAAGTCTTGACAAGGAATGGAAACAAGAAACGGAAATTGAGAGAGCCTCTCATTTGAACAAGATAGGAGTTCCACCTCCAACCCAAGAAAATGGATCCAAATTAGTTTTTACGACTCGTTCTAAGGAAGTTTGCAAAGACATAGAGGTTGATGATATAATGGAAGTTGCTTGTTTGTCACCGGATGAAGCCTGGGAGTTATTTCAGCAAAAAGTTGGAGAAAACCCTATAAAGAGCCATCATGATTTTCTCCCAGTTGCAAGAAAAATTGCTGCAAAATGTTGTGGCTTGCCACTTGCGCTATGTGTCATTGGAAAAGCCATGGCATGTAAAGAGACTGTACAAGAATGGCGTCATGCGATTCATGTTCTCAACTCGTCTAGCCATGAGTTTCCAGATTATGAAATAGGGAAGGAGAAATTGATAAAATATTGGATATGCGAAGGATTTATCGATGGAAGCAGAAATGACGATGGAGCTGACAACCAAGGTCATGATATAATCGGTTTACTAGTTCATGCCCATCTATTGGTGGATGGTGTACTCACATTCACCGTGAAAATGCATGATGTTATACGCGAGATGGCTCTTTGGATAGCATCTAATTTTGGGAAACAGAGAGAAACATTTTGTGTTAGATCTGGTGCGCAGTTACGTGAAATACCAAAAGACATCAATTGGGAACTTGTGAGAAGGATATCACTAATGAGCAATCAGATTTCGGAGATATCTTGCAGTTGCAACTGCTCCAACCTTTCGACCCTATTATTCCAGAATAATAAGTTGGTGGATATTTCATGTGAATTCTTTCGGTTTATGCCAGCACTTGTGGTCTTGGATCTATCGAGGAACTCAATTCTTTCTAGGTTGCCGGAAGAAATTTCTAACTTGGGTTCCTTGCAATATCTCAACTTATCATACACAGGAATGAAATCGTTACCAGATGGTTTGAAGGAGATGAAACGACTAATCGACTTGAATTTGGAGTTTACTCGTGAGCTTGAAAGTATTGTTGGGATAGCAACAAGTCTACCAAATCTTCAAGTGTTGAGATTATATTGTTCCAGAGTTTGTGTTGATGACATATTAATGAAAGAGCTACAACTCTTGGAGCACGTGGAGATTGTGACAGCAACCATAGAGGATGCCGTGATTTTGAAAAATATACAAGGAGTGGACCGATTAGCAAGCAGTATTCGAGGTTTATGTCTCAGCAATATGTCAGCACCGGTGGTAATATTAAACACGGTAGTTGTGGGAGGTCTTCAACGCCTTACTATTTGGAACTCCAAAATCTCTGAGATAAAGATAGATTGGGAAAGCAAAGAAAGAGGGGATCTAATATGTACAGGTTCTCCAGGCTTCAAGCAACTCTCCGCTGTACATATAGTCCGTTTGGAAGGTCCAACCGATTTGACATGGCTATTGTATGCTCAAAGTCTCAGGATTCTATCTGTGTCGGGTCCATCAAGTATAGAAGAAATAATAAATAGAGAGAAAGAAATGAGTATTAGGACGTTGCATCCAGATATTGTTGTGCCTTTCGAAGAGCTGGAGAGCATGTAA

Protein sequences

Name	Description	Sequence
hypothetical protein	hypothetical protein ARALYDRAFT_888984 [Arabidopsis lyrata subsp. lyrata].	MGNCVSLDVSCDQTLHHACGCLFGDGNYIHMMEANLEALEKTMQELEERRDDLLRRVVIDEDKGLQRLAQVQGWFSRVQSVESQVKDLLEARSTQTKRLCLLGYCSKKCITSWLLAKGVFQVVAEKIPVPKVDKKHFQTTVGLDSMVEKAWNSLMIGERRTLGLYGMGGVGKTTLLACINNRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQETEIERASHLNKIGVPPPTQENGSKLVFTTRSKEVCKDIEVDDIMEVACLSPDEAWELFQQKVGENPIKSHHDFLPVARKIAAKCCGLPLALCVIGKAMACKETVQEWRHAIHVLNSSSHEFPDYEIGKEKLIKYWICEGFIDGSRNDDGADNQGHDIIGLLVHAHLLVDGVLTFTVKMHDVIREMALWIASNFGKQRETFCVRSGAQLREIPKDINWELVRRISLMSNQISEISCSCNCSNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYTGMKSLPDGLKEMKRLIDLNLEFTRELESIVGIATSLPNLQVLRLYCSRVCVDDILMKELQLLEHVEIVTATIEDAVILKNIQGVDRLASSIRGLCLSNMSAPVVILNTVVVGGLQRLTIWNSKISEIKIDWESKERGDLICTGSPGFKQLSAVHIVRLEGPTDLTWLLYAQSLRILSVSGPSSIEEIINREKEMSIRTLHPDIVVPFEELESM

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR23155	1-733	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	MGNCVSLDVSCDQTLHHACGCLFGDGNYIHMMEANLEALEKTMQELEERRDDLLRRVVIDEDKGLQRLAQVQGWFSRVQSVESQVKDLLEARSTQTKRLCLLGYCSKKCITSWLLAKGVFQVVAEKIPVPKVDKKHFQTTVGLDSMVEKAWNSLMIGERRTLGLYGMGGVGKTTLLACINNRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQETEIERASHLNKIGVPPPTQENGSKLVFTTRSKEVCKDIEVDDIMEVACLSPDEAWELFQQKVGENPIKSHHDFLPVARKIAAKCCGLPLALCVIGKAMACKETVQEWRHAIHVLNSSSHEFPDYEIGKEKLIKYWICEGFIDGSRNDDGADNQGHDIIGLLVHAHLLVDGVLTFTVKMHDVIREMALWIASNFGKQRETFCVRSGAQLREIPKDINWELVRRISLMSNQISEISCSCNCSNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYTGMKSLPDGLKEMKRLIDLNLEFTRELESIVGIATSLPNLQVLRLYCSRVCVDDILMKELQLLEHVEIVTATIEDAVILKNIQGVDRLASSIRGLCLSNMSAPVVILNTVVVGGLQRLTIWNSKISEIKIDWESKERGDLICTGSPGFKQLSAVHIVRLEGPTDLTWLLYAQSLRILSVSGPSSIEEIINREKEMSIRTLHPDIVVPFEELE
HMMPanther: PTHR23155:SF113	1-733	PTHR23155:SF113,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)	MGNCVSLDVSCDQTLHHACGCLFGDGNYIHMMEANLEALEKTMQELEERRDDLLRRVVIDEDKGLQRLAQVQGWFSRVQSVESQVKDLLEARSTQTKRLCLLGYCSKKCITSWLLAKGVFQVVAEKIPVPKVDKKHFQTTVGLDSMVEKAWNSLMIGERRTLGLYGMGGVGKTTLLACINNRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQETEIERASHLNKIGVPPPTQENGSKLVFTTRSKEVCKDIEVDDIMEVACLSPDEAWELFQQKVGENPIKSHHDFLPVARKIAAKCCGLPLALCVIGKAMACKETVQEWRHAIHVLNSSSHEFPDYEIGKEKLIKYWICEGFIDGSRNDDGADNQGHDIIGLLVHAHLLVDGVLTFTVKMHDVIREMALWIASNFGKQRETFCVRSGAQLREIPKDINWELVRRISLMSNQISEISCSCNCSNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYTGMKSLPDGLKEMKRLIDLNLEFTRELESIVGIATSLPNLQVLRLYCSRVCVDDILMKELQLLEHVEIVTATIEDAVILKNIQGVDRLASSIRGLCLSNMSAPVVILNTVVVGGLQRLTIWNSKISEIKIDWESKERGDLICTGSPGFKQLSAVHIVRLEGPTDLTWLLYAQSLRILSVSGPSSIEEIINREKEMSIRTLHPDIVVPFEELE
superfamily: SSF52540	122-333	SSF52540	VVAEKIPVPKVDKKHFQTTVGLDSMVEKAWNSLMIGERRTLGLYGMGGVGKTTLLACINNRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQETEIERASHLNKIGVPPPTQENGSKLVFTTRSKEVCKDIEVDDIMEVACLSPDEAWELFQQKVGENPIKSHHDFLPVARKIAAKCCGLPLALCVIGKAMACKETVQEWRH
Gene3D: G3DSA:3.40.50.300	128-165	G3DSA:3.40.50.300	PVPKVDKKHFQTTVGLDSMVEKAWNSLMIGERRTLGLY
HMMPfam: PF00931 IPR002182	144-228	NB-ARC,NBS NB-ARC	DSMVEKAWNSLMIGERRTLGLYGMGGVGKTTLLACINNRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQETEIE
FPrintScan: PR00364 IPR000767	161-176	DISEASERSIST Disease resistance protein	TLGLYGMGGVGKTTLL
Gene3D: G3DSA:3.40.50.300	166-180	G3DSA:3.40.50.300	GMGGVGKTTLLACIN
Gene3D: G3DSA:3.40.50.300	181-225	G3DSA:3.40.50.300	NRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQET
HMMPfam: PF00931 IPR002182	231-344	NB-ARC,NBS NB-ARC	SHLNKIGVPPPTQENGSKLVFTTRSKEVCKDIEVDDIMEVACLSPDEAWELFQQKVGENPIKSHHDFLPVARKIAAKCCGLPLALCVIGKAMACKETVQEWRHAIHVLNSSSHE
FPrintScan: PR00364 IPR000767	308-322	DISEASERSIST Disease resistance protein	CCGLPLALCVIGKAM
superfamily: SSF52058	410-724	SSF52058,LRR	ALWIASNFGKQRETFCVRSGAQLREIPKDINWELVRRISLMSNQISEISCSCNCSNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYTGMKSLPDGLKEMKRLIDLNLEFTRELESIVGIATSLPNLQVLRLYCSRVCVDDILMKELQLLEHVEIVTATIEDAVILKNIQGVDRLASSIRGLCLSNMSAPVVILNTVVVGGLQRLTIWNSKISEIKIDWESKERGDLICTGSPGFKQLSAVHIVRLEGPTDLTWLLYAQSLRILSVSGPSSIEEIINREKEMSIRTLHPD
Gene3D: G3DSA:3.80.10.10	428-560	G3DSA:3.80.10.10	SGAQLREIPKDINWELVRRISLMSNQISEISCSCNCSNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYTGMKSLPDGLKEMKRLIDLNLEFTRELESIVGIATSLPN
HMMPfam: PF13855	464-522	LRR_8,Leucine rich repeat	SNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYT
FPrintScan: PR00364 IPR000767	485-501	DISEASERSIST Disease resistance protein	RFMPALVVLDLSRNSIL
Gene3D: G3DSA:3.40.50.300	561-604	G3DSA:3.40.50.300	LQVLRLYCSRVCVDDILMKELQLLEHVEIVTATIEDAVILKNIQ

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Analyses

Blast

Blast matches against Reference R-Genes. Show