PRGDB00063364 (hypothetical protein)
hypothetical protein | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 297335169 (GL348713) |
Gene Class | CNL |
Domain Type | NBS, LRR, Others |
Gene Species | Arabidopsis lyrata subsp. lyrata |
DNA Sequence
ATGGGAAACTGTGTATCACTAGACGTATCTTGTGATCAAACGTTGCATCACGCTTGTGGCTGCTTATTTGGTGATGGGAATTACATTCACATGATGGAGGCAAATCTTGAGGCTCTGGAGAAAACTATGCAAGAACTTGAAGAGAGACGAGATGATCTTTTAAGAAGAGTTGTCATTGACGAAGATAAAGGTTTGCAACGGCTTGCTCAAGTCCAAGGATGGTTTTCAAGGGTACAAAGTGTTGAGTCTCAAGTCAAAGATTTGCTCGAGGCTAGATCAACTCAAACTAAAAGATTGTGTCTGCTTGGATATTGCTCTAAGAAGTGCATAACAAGCTGGCTTCTAGCTAAAGGAGTTTTCCAAGTGGTGGCTGAGAAAATCCCTGTACCAAAGGTGGACAAGAAGCATTTTCAAACCACAGTTGGTTTGGATTCAATGGTTGAGAAGGCATGGAACAGCCTCATGATCGGTGAACGAAGAACACTGGGTCTTTATGGTATGGGGGGAGTCGGAAAAACTACCCTCTTAGCTTGTATCAACAACAGATTCCTCGAAGTGGTGAATGAATTTGATGTTGTGATCTGGGTTGTGGTCTCTAAAGATTTGCAAATTGAGAGCATCCAGAATCAGATTTTAGGAAGACTAAGTCTTGACAAGGAATGGAAACAAGAAACGGAAATTGAGAGAGCCTCTCATTTGAACAAGATAGGAGTTCCACCTCCAACCCAAGAAAATGGATCCAAATTAGTTTTTACGACTCGTTCTAAGGAAGTTTGCAAAGACATAGAGGTTGATGATATAATGGAAGTTGCTTGTTTGTCACCGGATGAAGCCTGGGAGTTATTTCAGCAAAAAGTTGGAGAAAACCCTATAAAGAGCCATCATGATTTTCTCCCAGTTGCAAGAAAAATTGCTGCAAAATGTTGTGGCTTGCCACTTGCGCTATGTGTCATTGGAAAAGCCATGGCATGTAAAGAGACTGTACAAGAATGGCGTCATGCGATTCATGTTCTCAACTCGTCTAGCCATGAGTTTCCAGATTATGAAATAGGGAAGGAGAAATTGATAAAATATTGGATATGCGAAGGATTTATCGATGGAAGCAGAAATGACGATGGAGCTGACAACCAAGGTCATGATATAATCGGTTTACTAGTTCATGCCCATCTATTGGTGGATGGTGTACTCACATTCACCGTGAAAATGCATGATGTTATACGCGAGATGGCTCTTTGGATAGCATCTAATTTTGGGAAACAGAGAGAAACATTTTGTGTTAGATCTGGTGCGCAGTTACGTGAAATACCAAAAGACATCAATTGGGAACTTGTGAGAAGGATATCACTAATGAGCAATCAGATTTCGGAGATATCTTGCAGTTGCAACTGCTCCAACCTTTCGACCCTATTATTCCAGAATAATAAGTTGGTGGATATTTCATGTGAATTCTTTCGGTTTATGCCAGCACTTGTGGTCTTGGATCTATCGAGGAACTCAATTCTTTCTAGGTTGCCGGAAGAAATTTCTAACTTGGGTTCCTTGCAATATCTCAACTTATCATACACAGGAATGAAATCGTTACCAGATGGTTTGAAGGAGATGAAACGACTAATCGACTTGAATTTGGAGTTTACTCGTGAGCTTGAAAGTATTGTTGGGATAGCAACAAGTCTACCAAATCTTCAAGTGTTGAGATTATATTGTTCCAGAGTTTGTGTTGATGACATATTAATGAAAGAGCTACAACTCTTGGAGCACGTGGAGATTGTGACAGCAACCATAGAGGATGCCGTGATTTTGAAAAATATACAAGGAGTGGACCGATTAGCAAGCAGTATTCGAGGTTTATGTCTCAGCAATATGTCAGCACCGGTGGTAATATTAAACACGGTAGTTGTGGGAGGTCTTCAACGCCTTACTATTTGGAACTCCAAAATCTCTGAGATAAAGATAGATTGGGAAAGCAAAGAAAGAGGGGATCTAATATGTACAGGTTCTCCAGGCTTCAAGCAACTCTCCGCTGTACATATAGTCCGTTTGGAAGGTCCAACCGATTTGACATGGCTATTGTATGCTCAAAGTCTCAGGATTCTATCTGTGTCGGGTCCATCAAGTATAGAAGAAATAATAAATAGAGAGAAAGAAATGAGTATTAGGACGTTGCATCCAGATATTGTTGTGCCTTTCGAAGAGCTGGAGAGCATGTAA
Protein sequences
Name | Description | Sequence |
---|---|---|
hypothetical protein | hypothetical protein ARALYDRAFT_888984 [Arabidopsis lyrata subsp. lyrata]. | MGNCVSLDVSCDQTLHHACGCLFGDGNYIHMMEANLEALEKTMQELEERRDDLLRRVVIDEDKGLQRLAQVQGWFSRVQSVESQVKDLLEARSTQTKRLCLLGYCSKKCITSWLLAKGVFQVVAEKIPVPKVDKKHFQTTVGLDSMVEKAWNSLMIGERRTLGLYGMGGVGKTTLLACINNRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQETEIERASHLNKIGVPPPTQENGSKLVFTTRSKEVCKDIEVDDIMEVACLSPDEAWELFQQKVGENPIKSHHDFLPVARKIAAKCCGLPLALCVIGKAMACKETVQEWRHAIHVLNSSSHEFPDYEIGKEKLIKYWICEGFIDGSRNDDGADNQGHDIIGLLVHAHLLVDGVLTFTVKMHDVIREMALWIASNFGKQRETFCVRSGAQLREIPKDINWELVRRISLMSNQISEISCSCNCSNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYTGMKSLPDGLKEMKRLIDLNLEFTRELESIVGIATSLPNLQVLRLYCSRVCVDDILMKELQLLEHVEIVTATIEDAVILKNIQGVDRLASSIRGLCLSNMSAPVVILNTVVVGGLQRLTIWNSKISEIKIDWESKERGDLICTGSPGFKQLSAVHIVRLEGPTDLTWLLYAQSLRILSVSGPSSIEEIINREKEMSIRTLHPDIVVPFEELESM |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR23155 | 1-733 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | MGNCVSLDVSCDQTLHHACGCLFGDGNYIHMMEANLEALEKTMQELEERRDDLLRRVVIDEDKGLQRLAQVQGWFSRVQSVESQVKDLLEARSTQTKRLCLLGYCSKKCITSWLLAKGVFQVVAEKIPVPKVDKKHFQTTVGLDSMVEKAWNSLMIGERRTLGLYGMGGVGKTTLLACINNRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQETEIERASHLNKIGVPPPTQENGSKLVFTTRSKEVCKDIEVDDIMEVACLSPDEAWELFQQKVGENPIKSHHDFLPVARKIAAKCCGLPLALCVIGKAMACKETVQEWRHAIHVLNSSSHEFPDYEIGKEKLIKYWICEGFIDGSRNDDGADNQGHDIIGLLVHAHLLVDGVLTFTVKMHDVIREMALWIASNFGKQRETFCVRSGAQLREIPKDINWELVRRISLMSNQISEISCSCNCSNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYTGMKSLPDGLKEMKRLIDLNLEFTRELESIVGIATSLPNLQVLRLYCSRVCVDDILMKELQLLEHVEIVTATIEDAVILKNIQGVDRLASSIRGLCLSNMSAPVVILNTVVVGGLQRLTIWNSKISEIKIDWESKERGDLICTGSPGFKQLSAVHIVRLEGPTDLTWLLYAQSLRILSVSGPSSIEEIINREKEMSIRTLHPDIVVPFEELE |
HMMPanther: PTHR23155:SF113 | 1-733 | PTHR23155:SF113,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS) | MGNCVSLDVSCDQTLHHACGCLFGDGNYIHMMEANLEALEKTMQELEERRDDLLRRVVIDEDKGLQRLAQVQGWFSRVQSVESQVKDLLEARSTQTKRLCLLGYCSKKCITSWLLAKGVFQVVAEKIPVPKVDKKHFQTTVGLDSMVEKAWNSLMIGERRTLGLYGMGGVGKTTLLACINNRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQETEIERASHLNKIGVPPPTQENGSKLVFTTRSKEVCKDIEVDDIMEVACLSPDEAWELFQQKVGENPIKSHHDFLPVARKIAAKCCGLPLALCVIGKAMACKETVQEWRHAIHVLNSSSHEFPDYEIGKEKLIKYWICEGFIDGSRNDDGADNQGHDIIGLLVHAHLLVDGVLTFTVKMHDVIREMALWIASNFGKQRETFCVRSGAQLREIPKDINWELVRRISLMSNQISEISCSCNCSNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYTGMKSLPDGLKEMKRLIDLNLEFTRELESIVGIATSLPNLQVLRLYCSRVCVDDILMKELQLLEHVEIVTATIEDAVILKNIQGVDRLASSIRGLCLSNMSAPVVILNTVVVGGLQRLTIWNSKISEIKIDWESKERGDLICTGSPGFKQLSAVHIVRLEGPTDLTWLLYAQSLRILSVSGPSSIEEIINREKEMSIRTLHPDIVVPFEELE |
superfamily: SSF52540 | 122-333 | SSF52540 | VVAEKIPVPKVDKKHFQTTVGLDSMVEKAWNSLMIGERRTLGLYGMGGVGKTTLLACINNRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQETEIERASHLNKIGVPPPTQENGSKLVFTTRSKEVCKDIEVDDIMEVACLSPDEAWELFQQKVGENPIKSHHDFLPVARKIAAKCCGLPLALCVIGKAMACKETVQEWRH |
Gene3D: G3DSA:3.40.50.300 | 128-165 | G3DSA:3.40.50.300 | PVPKVDKKHFQTTVGLDSMVEKAWNSLMIGERRTLGLY |
HMMPfam: PF00931 IPR002182
|
144-228 | NB-ARC,NBS NB-ARC
|
DSMVEKAWNSLMIGERRTLGLYGMGGVGKTTLLACINNRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQETEIE |
FPrintScan: PR00364 IPR000767
|
161-176 | DISEASERSIST Disease resistance protein
|
TLGLYGMGGVGKTTLL |
Gene3D: G3DSA:3.40.50.300 | 166-180 | G3DSA:3.40.50.300 | GMGGVGKTTLLACIN |
Gene3D: G3DSA:3.40.50.300 | 181-225 | G3DSA:3.40.50.300 | NRFLEVVNEFDVVIWVVVSKDLQIESIQNQILGRLSLDKEWKQET |
HMMPfam: PF00931 IPR002182
|
231-344 | NB-ARC,NBS NB-ARC
|
SHLNKIGVPPPTQENGSKLVFTTRSKEVCKDIEVDDIMEVACLSPDEAWELFQQKVGENPIKSHHDFLPVARKIAAKCCGLPLALCVIGKAMACKETVQEWRHAIHVLNSSSHE |
FPrintScan: PR00364 IPR000767
|
308-322 | DISEASERSIST Disease resistance protein
|
CCGLPLALCVIGKAM |
superfamily: SSF52058 | 410-724 | SSF52058,LRR | ALWIASNFGKQRETFCVRSGAQLREIPKDINWELVRRISLMSNQISEISCSCNCSNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYTGMKSLPDGLKEMKRLIDLNLEFTRELESIVGIATSLPNLQVLRLYCSRVCVDDILMKELQLLEHVEIVTATIEDAVILKNIQGVDRLASSIRGLCLSNMSAPVVILNTVVVGGLQRLTIWNSKISEIKIDWESKERGDLICTGSPGFKQLSAVHIVRLEGPTDLTWLLYAQSLRILSVSGPSSIEEIINREKEMSIRTLHPD |
Gene3D: G3DSA:3.80.10.10 | 428-560 | G3DSA:3.80.10.10 | SGAQLREIPKDINWELVRRISLMSNQISEISCSCNCSNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYTGMKSLPDGLKEMKRLIDLNLEFTRELESIVGIATSLPN |
HMMPfam: PF13855 | 464-522 | LRR_8,Leucine rich repeat | SNLSTLLFQNNKLVDISCEFFRFMPALVVLDLSRNSILSRLPEEISNLGSLQYLNLSYT |
FPrintScan: PR00364 IPR000767
|
485-501 | DISEASERSIST Disease resistance protein
|
RFMPALVVLDLSRNSIL |
Gene3D: G3DSA:3.40.50.300 | 561-604 | G3DSA:3.40.50.300 | LQVLRLYCSRVCVDDILMKELQLLEHVEIVTATIEDAVILKNIQ |
List of Contributions
There has not been any contribution yet.