PRGDB00063440 (disease resistance-like protein)

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disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 13310475 (AF338974)
Gene Class NL
Domain Type NBS, LRR
Gene Species Brassica rapa

Comment?

Brassica rapa cultivar R500 disease resistance-like protein (RGA10) gene, partial cds.

DNA Sequence

ATGGGGAACATTAAGGAGACGTATAGGAGAATCAGCCTCGATGATTACGGTTCGAAGTTGCATCTGCAAGAAGAGTTTTTGTCTAAGCTTATCAACCATAAAGATGTGAAGATACCTCACTCAGGTGTGGTAAGAGAAAGGTTGAAGGACAAGAGAGTCTTTGTTGTTCTTGATGATGTTGATGAACTGGAGCAACTCATTGCCTTGGCAAAGGAGCCTCGATGGTTTGGTTCTGGAAGTAGGATTGTAGTGACCACACAAGATAGACAGCTTCTGAAAGCACATGGTATCGACCTTGTATACAAGGTGGAACTTCCGTCTAGACTCGAAGCTCTTGAGATCTTCTGTCAATCTGCTTTTGGACAAAAACACCCTCCTTGTGTCGGT


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Brassica rapa].

MGNIKETYRRISLDDYGSKLHLQEEFLSKLINHKDVKIPHSGVVRERLKDKRVFVVLDDVDELEQLIALAKEPRWFGSGSRIVVTTQDRQLLKAHGIDLVYKVELPSRLEALEIFCQSAFGQKHPPCVG


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-126 PTHR11017:SF20,SUBFAMILY NOT NAMED

MGNIKETYRRISLDDYGSKLHLQEEFLSKLINHKDVKIPHSGVVRERLKDKRVFVVLDDVDELEQLIALAKEPRWFGSGSRIVVTTQDRQLLKAHGIDLVYKVELPSRLEALEIFCQSAFGQKHPP

HMMPanther: PTHR11017
1-126 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MGNIKETYRRISLDDYGSKLHLQEEFLSKLINHKDVKIPHSGVVRERLKDKRVFVVLDDVDELEQLIALAKEPRWFGSGSRIVVTTQDRQLLKAHGIDLVYKVELPSRLEALEIFCQSAFGQKHPP

superfamily: SSF52540
10-125 SSF52540

RISLDDYGSKLHLQEEFLSKLINHKDVKIPHSGVVRERLKDKRVFVVLDDVDELEQLIALAKEPRWFGSGSRIVVTTQDRQLLKAHGIDLVYKVELPSRLEALEIFCQSAFGQKHP

HMMPfam: PF00931
IPR002182
33-123 NB-ARC,NBS
NB-ARC

HKDVKIPHSGVVRERLKDKRVFVVLDDVDELEQLIALAKEPRWFGSGSRIVVTTQDRQLLKAHGIDLVYKVELPSRLEALEIFCQSAFGQK


List of References

M Fourmann, F Chariot, N Froger, R Delourme, D Brunel
Expression, mapping, and genetic variability of Brassica napus disease resistance gene analogues.
Genome: 2001, 44(6);1083-99
PubMed:11768212 WorldCat.org (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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