PRGDB00063503 (disease resistance-like protein)

From PRG Wiki
Jump to: navigation, search
disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 11761659 (AF209485)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Brassica napus

Comment?

Brassica napus disease resistance-like protein (RGA10) gene, partial cds.

DNA Sequence

ATGGGCGGTTCAGGTAACACTCTTCTCAAACAGATCAACAATAAGTTTTGTGAAGCAAACTATGACTTTGAGATTGTCATTTGGGTTGTGGTGTCCAGTGATCTACGGGTTGAGAAGATTCGAGCTGATATCGCTGAGGAGTTAGGCCTTCGACGAGAGACAAGACACAAGGTCACTGATATATATGCTCATATGAAGAATAAGAAATTTGTCTTGTTACTGGATGACATTTGGAAAAAAGTGGATTTAACAGAAATTGGAGTCCCATTTCCAACAAGGGAAAACGGATGCAAAGTAGTATTCACCACTCGTTCCAGGGAAGTATGTGGCCGCATGGGGGTTGATGATCCAATGGAAGTCCAGTGTCTAACAAACAATGAAGCATGGAACTTGTTCGAGAAAAAGGTCGGACAGCTCACGTTAAAAAGCCACCCAAGCATTCCTGAACAAGCAAGAAAAGTTGCTGAAAAATGTCGTGGCCTACCTTTAGCTCTCAGCGTCATTGGCAAGACCATGTCAAGCAAGAGGACTATACAAGAATGGGATCATGCCGTTCAGGTTTTGAATTCGTATGCTGCAGATTTTTCTGGCATGGATGACCAAATCCTTCCTATTCTAAAGTATAGCTATGATAGCTTGAAGGGTGACCAGATCAAGTCATGCTTCCTCTATTGTTCTCTTT


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Brassica napus].

MGGSGNTLLKQINNKFCEANYDFEIVIWVVVSSDLRVEKIRADIAEELGLRRETRHKVTDIYAHMKNKKFVLLLDDIWKKVDLTEIGVPFPTRENGCKVVFTTRSREVCGRMGVDDPMEVQCLTNNEAWNLFEKKVGQLTLKSHPSIPEQARKVAEKCRGLPLALSVIGKTMSSKRTIQEWDHAVQVLNSYAADFSGMDDQILPILKYSYDSLKGDQIKSCFLYCSL

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF108
1-221 PTHR23155:SF108,SUBFAMILY NOT NAMED

MGGSGNTLLKQINNKFCEANYDFEIVIWVVVSSDLRVEKIRADIAEELGLRRETRHKVTDIYAHMKNKKFVLLLDDIWKKVDLTEIGVPFPTRENGCKVVFTTRSREVCGRMGVDDPMEVQCLTNNEAWNLFEKKVGQLTLKSHPSIPEQARKVAEKCRGLPLALSVIGKTMSSKRTIQEWDHAVQVLNSYAADFSGMDDQILPILKYSYDSLKGDQIKSC

HMMPfam: PF00931
IPR002182
1-227 NB-ARC,NBS
NB-ARC

MGGSGNTLLKQINNKFCEANYDFEIVIWVVVSSDLRVEKIRADIAEELGLRRETRHKVTDIYAHMKNKKFVLLLDDIWKKVDLTEIGVPFPTRENGCKVVFTTRSREVCGRMGVDDPMEVQCLTNNEAWNLFEKKVGQLTLKSHPSIPEQARKVAEKCRGLPLALSVIGKTMSSKRTIQEWDHAVQVLNSYAADFSGMDDQILPILKYSYDSLKGDQIKSCFLYCSL

superfamily: SSF52540
1-194 SSF52540

MGGSGNTLLKQINNKFCEANYDFEIVIWVVVSSDLRVEKIRADIAEELGLRRETRHKVTDIYAHMKNKKFVLLLDDIWKKVDLTEIGVPFPTRENGCKVVFTTRSREVCGRMGVDDPMEVQCLTNNEAWNLFEKKVGQLTLKSHPSIPEQARKVAEKCRGLPLALSVIGKTMSSKRTIQEWDHAVQVLNSYAAD

HMMPanther: PTHR23155
1-221 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MGGSGNTLLKQINNKFCEANYDFEIVIWVVVSSDLRVEKIRADIAEELGLRRETRHKVTDIYAHMKNKKFVLLLDDIWKKVDLTEIGVPFPTRENGCKVVFTTRSREVCGRMGVDDPMEVQCLTNNEAWNLFEKKVGQLTLKSHPSIPEQARKVAEKCRGLPLALSVIGKTMSSKRTIQEWDHAVQVLNSYAADFSGMDDQILPILKYSYDSLKGDQIKSC

FPrintScan: PR00364
IPR000767
64-78 DISEASERSIST
Disease resistance protein

HMKNKKFVLLLDDIW

FPrintScan: PR00364
IPR000767
158-172 DISEASERSIST
Disease resistance protein

CRGLPLALSVIGKTM


List of References

M Fourmann, F Chariot, N Froger, R Delourme, D Brunel
Expression, mapping, and genetic variability of Brassica napus disease resistance gene analogues.
Genome: 2001, 44(6);1083-99
PubMed:11768212 WorldCat.org (P p)





List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox