PRGDB00063601 (formate dehydrogenase)

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formate dehydrogenase
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 270342091 (FJ817291)
Gene Class Unknown
Domain Type
Gene Species Phaseolus vulgaris

Comment?

Phaseolus vulgaris clone BAC B4-410, complete sequence.

DNA Sequence

ATGGCCATGAAACGTGCTGCTTCCTCTGCAACTCGTTCTCTGCTTTCTTCCTCTTCTTCCACCTTCTCCAGAAACCTTCATGCTCCAGCTGAGAGGAAGAAGATTGTGGGAGTGTTCTACAAAGGGAATGAGTATGCTAAACTGAATCCCAATTTCGTGGGATGTGTTGAAGGAGCATTGGGTATTCGTGAGTGGTTGGAATCAAAGGGTCATCAATATATTGTTACTGATGACAAAGAAGGCTCCAATTCTGAACTTGATAAACACCTACCTGATGCACATGTCCTCATTTCCACTCCATTTCATCCTGCCTATGTCACTGCTGAAAGAATAAAGAAGGCCAAGAATCTAGAACTGCTTTTGACTGCTGGCATTGGTTCTGATCATGTTGATCTCAAGGCTGCGGCTGAAGCTGGTTTAACAGTGGCAGAGATAACTGGAAGCAATGTGGTGTCGGTTGCTGAGGATGAACTCCTGAGAATCCTTGTTCTAGTGAGGAATTTCTTGCCAGGGTACCATCAAGCTGTTAATGGAGAATGGAATGTTGCTGGCATTGCACACAGAGCTTATGATCTTGAAGGCAAGACAATAGGAACTGTTGGTGCTGGAAGAATTGGGAAGCTTTTACTGCAGAGGTTGAAGCCTTTTAACTGTAATCTTTTGTACTATGATCGCCTCAAGATGAATCCTGAATTGGAGAAAGAGATTGGAGCAAAGTTTGAGGAGGATCTTGATGCAATGCTTCCTAAGTGTGATGTAATTGTTATCAACATGCCTCTCACTGAGCAGACAAGAGGATTATTTGACAAGAACAGAATTGCTAAGTGCAAGAAAGGTGTGGTGATTGTTAACAATGCTCGAGGGGCAATTATGGACACACAGGCAATTGCTGATGCATGCACCAGTGGTCATGTTGCAGGTTATGGTGGGGATGTTTGGCCTGTACAACCAGCTCCAAAGGATCATCCATGGCGGTTCATGCCAAACCATGCCATGACTCCTCATATTTCTGGGACCACCATAGATGCACAGTTACGTTATGCTGCTGGTGTGAAAGACATGTTGGATAGGCACTTCAGGGGTGAAGATTTTCCAGAACAAAACTACATTGTGAAGGAGGGTCAACTTGCACCCCAATATCGTTGA


Protein sequences

Name Description Sequence
formate dehydrogenase formate dehydrogenase [Phaseolus vulgaris].

MAMKRAASSATRSLLSSSSSTFSRNLHAPAERKKIVGVFYKGNEYAKLNPNFVGCVEGALGIREWLESKGHQYIVTDDKEGSNSELDKHLPDAHVLISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHVDLKAAAEAGLTVAEITGSNVVSVAEDELLRILVLVRNFLPGYHQAVNGEWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCNLLYYDRLKMNPELEKEIGAKFEEDLDAMLPKCDVIVINMPLTEQTRGLFDKNRIAKCKKGVVIVNNARGAIMDTQAIADACTSGHVAGYGGDVWPVQPAPKDHPWRFMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRHFRGEDFPEQNYIVKEGQLAPQYR

Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.40.50.720
IPR016040
20-185 NAD(P)-bd
NAD(P)-binding domain

STFSRNLHAPAERKKIVGVFYKGNEYAKLNPNFVGCVEGALGIREWLESKGHQYIVTDDKEGSNSELDKHLPDAHVLISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHVDLKAAAEAGLTVAEITGSNVVSVAEDELLRILVLVRNFLPGYHQAVNGEWNVAGI

superfamily: SSF52283
33-181 SSF52283

KKIVGVFYKGNEYAKLNPNFVGCVEGALGIREWLESKGHQYIVTDDKEGSNSELDKHLPDAHVLISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHVDLKAAAEAGLTVAEITGSNVVSVAEDELLRILVLVRNFLPGYHQAVNGEWN

HMMPanther: PTHR10996:SF16
62-371 PTHR10996:SF16,FORMATE DEHYDROGENASE

IREWLESKGHQYIVTDDKEGSNSELDKHLPDAHVLISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHVDLKAAAEAGLTVAEITGSNVVSVAEDELLRILVLVRNFLPGYHQAVNGEWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCNLLYYDRLKMNPELEKEIGAKFEEDLDAMLPKCDVIVINMPLTEQTRGLFDKNRIAKCKKGVVIVNNARGAIMDTQAIADACTSGHVAGYGGDVWPVQPAPKDHPWRFMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRHFRGEDFPEQNYIV

HMMPanther: PTHR10996
62-371 PTHR10996,2-HYDROXYACID DEHYDROGENASE-RELATED

IREWLESKGHQYIVTDDKEGSNSELDKHLPDAHVLISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHVDLKAAAEAGLTVAEITGSNVVSVAEDELLRILVLVRNFLPGYHQAVNGEWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCNLLYYDRLKMNPELEKEIGAKFEEDLDAMLPKCDVIVINMPLTEQTRGLFDKNRIAKCKKGVVIVNNARGAIMDTQAIADACTSGHVAGYGGDVWPVQPAPKDHPWRFMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRHFRGEDFPEQNYIV

HMMPfam: PF00389
IPR006139
66-363 2-Hacid_dh
D-isomer specific 2-hydroxyacid dehydrogenase, cat

LESKGHQYIVTDDKEGSNSELDKHLPDAHVLISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHVDLKAAAEAGLTVAEITGSNVVSVAEDELLRILVLVRNFLPGYHQAVNGEWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCNLLYYDRLKMNPELEKEIGAKFEEDLDAMLPKCDVIVINMPLTEQTRGLFDKNRIAKCKKGVVIVNNARGAIMDTQAIADACTSGHVAGYGGDVWPVQPAPKDHPWRFMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRHFRGED

superfamily: SSF51735
151-338 NAD(P)-bd

VSVAEDELLRILVLVRNFLPGYHQAVNGEWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCNLLYYDRLKMNPELEKEIGAKFEEDLDAMLPKCDVIVINMPLTEQTRGLFDKNRIAKCKKGVVIVNNARGAIMDTQAIADACTSGHVAGYGGDVWPVQPAPKDHPWRFMPNHAMTPHISG

HMMPfam: PF02826
IPR006140
161-337 2-Hacid_dh_C
D-isomer specific 2-hydroxyacid dehydrogenase, NAD

ILVLVRNFLPGYHQAVNGEWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCNLLYYDRLKMNPELEKEIGAKFEEDLDAMLPKCDVIVINMPLTEQTRGLFDKNRIAKCKKGVVIVNNARGAIMDTQAIADACTSGHVAGYGGDVWPVQPAPKDHPWRFMPNHAMTPHIS

Gene3D: G3DSA:3.40.50.720
IPR016040
190-336 NAD(P)-bd
NAD(P)-binding domain

YDLEGKTIGTVGAGRIGKLLLQRLKPFNCNLLYYDRLKMNPELEKEIGAKFEEDLDAMLPKCDVIVINMPLTEQTRGLFDKNRIAKCKKGVVIVNNARGAIMDTQAIADACTSGHVAGYGGDVWPVQPAPKDHPWRFMPNHAMTPHI

PatternScan: PS00065
IPR006140
197-224 D_2_HYDROXYACID_DH_1
D-isomer specific 2-hydroxyacid dehydrogenase, NAD

IGTVGAGRIGKLLLQRLKPFNCNLLYYD

PatternScan: PS00670
IPR006140
247-269 D_2_HYDROXYACID_DH_2
D-isomer specific 2-hydroxyacid dehydrogenase, NAD

MLPKCDVIVINMPLTEQTRGLFD

PatternScan: PS00671
IPR006140
276-292 D_2_HYDROXYACID_DH_3
D-isomer specific 2-hydroxyacid dehydrogenase, NAD

CKKGVVIVNNARGAIMD


List of References

Perrine David, Nicolas W G Chen, Andrea Pedrosa-Harand, Vincent Thareau, Mireille Sévignac, Steven B Cannon, Daniel Debouck, Thierry Langin, Valérie Geffroy
A nomadic subtelomeric disease resistance gene cluster in common bean.
Plant Physiol.: 2009, 151(3);1048-65
PubMed:19776165 WorldCat.org DOI (I p)





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Analyses

Blast

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