PRGDB00063655 (disease resistance-like protein GS5-3)

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disease resistance-like protein GS5-3
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 22037380 (AF403285)
Gene Class Unknown
Domain Type LRR
Gene Species Glycine max

Comment?

Glycine max disease resistance-like protein GS5-3 gene, partial cds.

DNA Sequence

CCATCTAACTTTGATCCTATCAACCTTGTTATATGCAAGTTACCTGACAGCTCCATTACGTCATTTGAGTTCCATGGCTCATCCAGGGCAATTTTAAATTTTGACCAGTGCGAATTTTTAACAAAGATACCTGATGTATCTGATCTCCCAAATTTGGAGGAACTTTCATTTAATTGGTGTGAGAGTTTAGTTGCAGTTGATGACTCAATTGGTTTTCTGAATAAACTTAAAAAATTGAGTGCTTATGGTTGCAGGAAGCTTACGAGTTTTCCGCCTCTCAACTTGACCTCTCTTGAAACACTTGCACTTTCTCACTGTTCCAGTCTTGAGTATTTTCCAGAAATATTAGGAGAGATGGAAAATATAAAGCATCTTTTTTTGTATGGCCTTCACATAAAAGAATTGCAGTTTTCATTTCAAAATCTTATTGGACTCCTGATTTTATGGCTGGATAGTTGTGGAATTGT


Protein sequences

Name Description Sequence
disease resistance-like protein GS5-3 disease resistance-like protein GS5-3 [Glycine max].

PSNFDPINLVICKLPDSSITSFEFHGSSRAILNFDQCEFLTKIPDVSDLPNLEELSFNWCESLVAVDDSIGFLNKLKKLSAYGCRKLTSFPPLNLTSLETLALSHCSSLEYFPEILGEMENIKHLFLYGLHIKELQFSFQNLIGLLILWLDSCGIV

Domains

Domain Start-End Description Sequence

superfamily: SSF52058
4-156 SSF52058,LRR

FDPINLVICKLPDSSITSFEFHGSSRAILNFDQCEFLTKIPDVSDLPNLEELSFNWCESLVAVDDSIGFLNKLKKLSAYGCRKLTSFPPLNLTSLETLALSHCSSLEYFPEILGEMENIKHLFLYGLHIKELQFSFQNLIGLLILWLDSCGIV

Gene3D: G3DSA:3.80.10.10
7-155 G3DSA:3.80.10.10

INLVICKLPDSSITSFEFHGSSRAILNFDQCEFLTKIPDVSDLPNLEELSFNWCESLVAVDDSIGFLNKLKKLSAYGCRKLTSFPPLNLTSLETLALSHCSSLEYFPEILGEMENIKHLFLYGLHIKELQFSFQNLIGLLILWLDSCGI

HMMPanther: PTHR23155:SF252
44-155 PTHR23155:SF252,SUBFAMILY NOT NAMED

PDVSDLPNLEELSFNWCESLVAVDDSIGFLNKLKKLSAYGCRKLTSFPPLNLTSLETLALSHCSSLEYFPEILGEMENIKHLFLYGLHIKELQFSFQNLIGLLILWLDSCGI

HMMPanther: PTHR23155
44-155 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

PDVSDLPNLEELSFNWCESLVAVDDSIGFLNKLKKLSAYGCRKLTSFPPLNLTSLETLALSHCSSLEYFPEILGEMENIKHLFLYGLHIKELQFSFQNLIGLLILWLDSCGI

HMMPfam: PF13504
75-91 LRR_7,Leucine rich repeat

KLKKLSAYGCRKLTSFP

HMMPfam: PF13504
96-113 LRR_7,Leucine rich repeat

TSLETLALSHCSSLEYFP


List of References

A. Graham, F. Marek, C. Shoemaker
PCR Sampling of disease resistance-like sequences from a disease resistance gene cluster in soybean.
Theor. Appl. Genet.: 2002, 105(1);50-57
PubMed:12582561 WorldCat.org DOI (I p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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