PRGDB00063772 (hypothetical protein)

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hypothetical protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 242069462 (XM_002449963)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Sorghum bicolor

Comment?

Sorghum bicolor hypothetical protein, mRNA.

DNA Sequence

ATGGAGGCTACGGGTGTCATGGACTCCCTCCTGAAGAAACTTGGCGATCTCCTCGCTGAGGAGTACACTCGCCTGAAAGGAGTCCGCCGCGAGATCCGCTTCCTCCGGTCTGAGCTAAACAGCATGAATGCCGTTCTCCAAAAGTGTGCTGCAATGGAGAGCCCAGACGTGCAAGTGAAGGCCTGGACAAGAGAGCTGAGGGAGCTCGCCTACGACATCGAAGACTGCGTGGACGAGTTCGTCCGCGGAGTTGACACCAAGCGTCAGCGTCAGCGTCACGGTCGTCCAAGCTGCATCAAGGAGTGCGCTCGGCGTCTCAAGGCGCTGGTGACGAGGCACGAGATCGCCAACCAAATCCAACAACTCAAGGCGCGTGTGGTGGAGGTGGCGGAGCAGCGCGTGAGGTACAAGCTCGATCAAGTTTCCAGCAGCAGTCCCTGCAGCAGCATTCGAGCCACGGATCCTCGACTGTGGGCTCTGTTCCCAGAGGAGTCTCAGCTTGTGGGCATCGATGGCCCAAGGGATGACCTTGCGAGCTGGCTCCTGATGGAGGATGACGACCTTGCTGGTCGTCGTCGCAAGGTGCTGTCCATCTATGGCTTTGGTGGTTTGGGAAAAACCACGCTTGCCAACGAGGTCCGGCGTAAGATTGGGAAGCAATTCGACTGTGAGGCGGTTGTGCCGGTCTCGCAAAAGCCCGATGACAAGAAAATCCTCTGGAATATACTCACTCGCGTAGACAAGAACCGTACTCTTGTCCATGAAAGAGAGATATGGGACGAGCAAAGGATTATAGAAGAAATAAGAGACCTACTGGAACATAAGAGGTACTTTATCATAATTGACGACATATGGTCTGAACGAGATTGGAATTTGCTGAAGTGTGCTCTGCCAGAGAACAATATGGGTAGTAGAATAATTACTACAACACGTATCGAGTCTATAGCAAAGGCATGTTGCAGTCTTCCCGGTGACCGTTGCTACAAAATTGAAGCACTGAGTGAGTCCCACTCAAGAAGCCTACTTTTTAAAAAAGTATTTGGCTCTGAGGATGGATGCCCTGACAGAATTAAGCATATTTCAGCTGATATACTAAGAAAATGCAGTGGCCTCCCCCTGGCTATAGTTTGCATAGCTAGCTTATTGGCTAGCAAGCCCAATATGATCGAGCAATGGGAAAAAGTGAGGGCATCTACAGGATATGCATTGCAAATAAAACAAGATCCTGGGGGTATGGAATCTATATTGTCACTCAGCTATAGTGATCTTCCGCAGCATCTCAAAACTTGCTTACTCTATTTGAGTGTATTTCCTGAGGATTATGACATTGAAAGAGGTAGTTTACTGAGAAGATGGATAGCTGAAGGATTCATAAAGGAGGAAGGGGGGTTAATTGCAGAGGATGTTGCTGAAAGCTACTTCAATGAGCTCATCAATAGGAGTATGATTATACCTGTTGACATTGACCGTTCTGGAAAGGTGCGAGTTTGTCGTCTGCACGATATGATGCTAGAACTACTGAAATCAAGGGCAACAGAGGAGAATTTTGTTACAATCATGGGTCCAGGCCCGCTTTCAACAAACCCAGAAGGTGTTATCCGACGGCTATCAATTCAATACAATGATCGAGAGCAGAAGTTGGAACCCCAAGAAATGCCATCGTTAACCCATGTTAGATCATTCAGCACCTTTGGTGGCTCTTACAACCAGACACTACCATTTGCTTATTTTAGAGTTTTACGTGTCTTGAGTCTCGATTGTCAGTTGAGTGGGGCGGATGATTTGAAGATTATTTGCAAACTACATCAGCTGAAGTATTTGAGACTGAATGTACATGAACTTCCTGCAGAAATTGGAGAGCTGCGGTATCTTGAGACACTAGAATTGTGTTCTTACCGAGGGGTAAACTTGCTGCCCCATGGTGTTACTCGGTTACAGCATCTAAGGCATCTTATTGTGAACTGGATGATGTTGTTACCAGAAGCCATTGGGAGCATGCAAGCACTTCAGACACTACCACATTTCAATGTCCGTGACAGCCCAGTAAGTGCAGTGCAGGAGCTTGGCAATTTGAAAAACTTGAGAGATCTCTCGATATCATGGAATGAGCCAGCAGAAGGAAGGTGCAAGGAGTACTTGGCCTCTTCTCTCAACAAATTGAGCAGTTACAACCTCCAGTCACTGAATATTGTTAGCGGACAAGCTATTCCAGTTGATTTTCTAGCATCATTATCACCCCCACCGTACCTCCTTAAAAGATTCTGGATGTGGAACTCTTACTTTCAGCGCTGTCCCAAGTGGATTGGACCACTCAATAGGCTCACTGAGATGAAACTTGATGTCTGCGAGATGGAGGACGAAGATTTGGATTTGCTCGGACATCTACCGGCTTTGGTTCATTTCCAACTTTGGGTGGTTCCTCTTCGTAAGGAGAAGATTATCATTAAGAGAAATGGTTTCCGTAGTCTTAATGCTTTCCGCCTCTGGTCAGGGCTGCCATGCTTAGTTTTCCAAGAGAAGTCAATGCCAAGGCTCGAAACCCTCGAGTTGATGTTCAGTGCTTGTGGGGCAAAATCATATGGAAGCACACATTCTGGTATTGAGCACCTTCACGATCTAAAAAATGTCAATGTTACAATATATACAGACGGTGCCAGACAATCAAACATTGAGGCTGCATGTCATATGATCCGTCAACAAATTGCTAAGCACCCGAATAATGTCAGGGGCAATATTACTTATAGTAGTGGCTACATCGGGGGTGTAATGAACGATGGCAGTGTTGACGAGGAGGCCATTGTACTGGGTTCTGAGGGCAGCAAATAG


Protein sequences

Name Description Sequence
hypothetical protein hypothetical protein SORBIDRAFT_05g027000 [Sorghum bicolor].

MEATGVMDSLLKKLGDLLAEEYTRLKGVRREIRFLRSELNSMNAVLQKCAAMESPDVQVKAWTRELRELAYDIEDCVDEFVRGVDTKRQRQRHGRPSCIKECARRLKALVTRHEIANQIQQLKARVVEVAEQRVRYKLDQVSSSSPCSSIRATDPRLWALFPEESQLVGIDGPRDDLASWLLMEDDDLAGRRRKVLSIYGFGGLGKTTLANEVRRKIGKQFDCEAVVPVSQKPDDKKILWNILTRVDKNRTLVHEREIWDEQRIIEEIRDLLEHKRYFIIIDDIWSERDWNLLKCALPENNMGSRIITTTRIESIAKACCSLPGDRCYKIEALSESHSRSLLFKKVFGSEDGCPDRIKHISADILRKCSGLPLAIVCIASLLASKPNMIEQWEKVRASTGYALQIKQDPGGMESILSLSYSDLPQHLKTCLLYLSVFPEDYDIERGSLLRRWIAEGFIKEEGGLIAEDVAESYFNELINRSMIIPVDIDRSGKVRVCRLHDMMLELLKSRATEENFVTIMGPGPLSTNPEGVIRRLSIQYNDREQKLEPQEMPSLTHVRSFSTFGGSYNQTLPFAYFRVLRVLSLDCQLSGADDLKIICKLHQLKYLRLNVHELPAEIGELRYLETLELCSYRGVNLLPHGVTRLQHLRHLIVNWMMLLPEAIGSMQALQTLPHFNVRDSPVSAVQELGNLKNLRDLSISWNEPAEGRCKEYLASSLNKLSSYNLQSLNIVSGQAIPVDFLASLSPPPYLLKRFWMWNSYFQRCPKWIGPLNRLTEMKLDVCEMEDEDLDLLGHLPALVHFQLWVVPLRKEKIIIKRNGFRSLNAFRLWSGLPCLVFQEKSMPRLETLELMFSACGAKSYGSTHSGIEHLHDLKNVNVTIYTDGARQSNIEAACHMIRQQIAKHPNNVRGNITYSSGYIGGVMNDGSVDEEAIVLGSEGSK

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
150-398 SSF52540

IRATDPRLWALFPEESQLVGIDGPRDDLASWLLMEDDDLAGRRRKVLSIYGFGGLGKTTLANEVRRKIGKQFDCEAVVPVSQKPDDKKILWNILTRVDKNRTLVHEREIWDEQRIIEEIRDLLEHKRYFIIIDDIWSERDWNLLKCALPENNMGSRIITTTRIESIAKACCSLPGDRCYKIEALSESHSRSLLFKKVFGSEDGCPDRIKHISADILRKCSGLPLAIVCIASLLASKPNMIEQWEKVRAS

Gene3D: G3DSA:3.40.50.300
167-321 G3DSA:3.40.50.300

LVGIDGPRDDLASWLLMEDDDLAGRRRKVLSIYGFGGLGKTTLANEVRRKIGKQFDCEAVVPVSQKPDDKKILWNILTRVDKNRTLVHEREIWDEQRIIEEIRDLLEHKRYFIIIDDIWSERDWNLLKCALPENNMGSRIITTTRIESIAKACCS

HMMPfam: PF00931
IPR002182
191-461 NB-ARC,NBS
NB-ARC

RRRKVLSIYGFGGLGKTTLANEVRRKIGKQFDCEAVVPVSQKPDDKKILWNILTRVDKNRTLVHEREIWDEQRIIEEIRDLLEHKRYFIIIDDIWSERDWNLLKCALPENNMGSRIITTTRIESIAKACCSLPGDRCYKIEALSESHSRSLLFKKVFGSEDGCPDRIKHISADILRKCSGLPLAIVCIASLLASKPNMIEQWEKVRASTGYALQIKQDPGGMESILSLSYSDLPQHLKTCLLYLSVFPEDYDIERGSLLRRWIAEGFIKEE

FPrintScan: PR00364
IPR000767
195-210 DISEASERSIST
Disease resistance protein

VLSIYGFGGLGKTTLA

FPrintScan: PR00364
IPR000767
271-285 DISEASERSIST
Disease resistance protein

LLEHKRYFIIIDDIW

FPrintScan: PR00364
IPR000767
368-382 DISEASERSIST
Disease resistance protein

CSGLPLAIVCIASLL

HMMPanther: PTHR24420:SF944
412-801 PTHR24420:SF944

MESILSLSYSDLPQHLKTCLLYLSVFPEDYDIERGSLLRRWIAEGFIKEEGGLIAEDVAESYFNELINRSMIIPVDIDRSGKVRVCRLHDMMLELLKSRATEENFVTIMGPGPLSTNPEGVIRRLSIQYNDREQKLEPQEMPSLTHVRSFSTFGGSYNQTLPFAYFRVLRVLSLDCQLSGADDLKIICKLHQLKYLRLNVHELPAEIGELRYLETLELCSYRGVNLLPHGVTRLQHLRHLIVNWMMLLPEAIGSMQALQTLPHFNVRDSPVSAVQELGNLKNLRDLSISWNEPAEGRCKEYLASSLNKLSSYNLQSLNIVSGQAIPVDFLASLSPPPYLLKRFWMWNSYFQRCPKWIGPLNRLTEMKLDVCEMEDEDLDLLGHLPALVHF

HMMPanther: PTHR24420
412-801 PTHR24420,FAMILY NOT NAMED

MESILSLSYSDLPQHLKTCLLYLSVFPEDYDIERGSLLRRWIAEGFIKEEGGLIAEDVAESYFNELINRSMIIPVDIDRSGKVRVCRLHDMMLELLKSRATEENFVTIMGPGPLSTNPEGVIRRLSIQYNDREQKLEPQEMPSLTHVRSFSTFGGSYNQTLPFAYFRVLRVLSLDCQLSGADDLKIICKLHQLKYLRLNVHELPAEIGELRYLETLELCSYRGVNLLPHGVTRLQHLRHLIVNWMMLLPEAIGSMQALQTLPHFNVRDSPVSAVQELGNLKNLRDLSISWNEPAEGRCKEYLASSLNKLSSYNLQSLNIVSGQAIPVDFLASLSPPPYLLKRFWMWNSYFQRCPKWIGPLNRLTEMKLDVCEMEDEDLDLLGHLPALVHF

superfamily: SSF52047
531-852 SSF52047,LRR

GVIRRLSIQYNDREQKLEPQEMPSLTHVRSFSTFGGSYNQTLPFAYFRVLRVLSLDCQLSGADDLKIICKLHQLKYLRLNVHELPAEIGELRYLETLELCSYRGVNLLPHGVTRLQHLRHLIVNWMMLLPEAIGSMQALQTLPHFNVRDSPVSAVQELGNLKNLRDLSISWNEPAEGRCKEYLASSLNKLSSYNLQSLNIVSGQAIPVDFLASLSPPPYLLKRFWMWNSYFQRCPKWIGPLNRLTEMKLDVCEMEDEDLDLLGHLPALVHFQLWVVPLRKEKIIIKRNGFRSLNAFRLWSGLPCLVFQEKSMPRLETLELMF

Gene3D: G3DSA:3.80.10.10
550-805 G3DSA:3.80.10.10

QEMPSLTHVRSFSTFGGSYNQTLPFAYFRVLRVLSLDCQLSGADDLKIICKLHQLKYLRLNVHELPAEIGELRYLETLELCSYRGVNLLPHGVTRLQHLRHLIVNWMMLLPEAIGSMQALQTLPHFNVRDSPVSAVQELGNLKNLRDLSISWNEPAEGRCKEYLASSLNKLSSYNLQSLNIVSGQAIPVDFLASLSPPPYLLKRFWMWNSYFQRCPKWIGPLNRLTEMKLDVCEMEDEDLDLLGHLPALVHFQLWV

FPrintScan: PR00364
IPR000767
619-635 DISEASERSIST
Disease resistance protein

GELRYLETLELCSYRGV


List of References

Andrew H Paterson, John E Bowers, Rémy Bruggmann, Inna Dubchak, Jane Grimwood, Heidrun Gundlach, Georg Haberer, Uffe Hellsten, Therese Mitros, Alexander Poliakov, Jeremy Schmutz, Manuel Spannagl, Haibao Tang, Xiyin Wang, Thomas Wicker, Arvind K Bharti, Jarrod Chapman, F Alex Feltus, Udo Gowik, Igor V Grigoriev, Eric Lyons, Christopher A Maher, Mihaela Martis, Apurva Narechania, Robert P Otillar, Bryan W Penning, Asaf A Salamov, Yu Wang, Lifang Zhang, Nicholas C Carpita, Michael Freeling, Alan R Gingle, C Thomas Hash, Beat Keller, Patricia Klein, Stephen Kresovich, Maureen C McCann, Ray Ming, Daniel G Peterson, Mehboob-ur-Rahman, Doreen Ware, Peter Westhoff, Klaus F X Mayer, Joachim Messing, Daniel S Rokhsar
The Sorghum bicolor genome and the diversification of grasses.
Nature: 2009, 457(7229);551-6
PubMed:19189423 WorldCat.org DOI (I p)





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Analyses

Blast

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