PRGDB00063799 (hypothetical protein)

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hypothetical protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 242043171 (XM_002459412)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Sorghum bicolor

Comment?

Sorghum bicolor hypothetical protein, mRNA.

DNA Sequence

ATGGCAGAAGCTTTGGTCATAGTGGTTCTTCAGAAGATTACCTCTGCACTTGGAGCAGAGGGGTTGAAAATTATCGGCTCAAAGTTACAGAAGCAGGTACCTGACGTGCAAGAAGTAATCAACAGAATGAGGCTACTCCAAAGTGATTTGTCGATGATGCAAGCATTCATAAGTCAAGTAGATGCTCACAGTTCCAGTGATAAGTTACTGGGGGCCTGGCTGGAACAGGTAAGACAAGCAGCACATGACGCTGAGGACATTGTTGACGAGTACATCTATCTTGTTGGCCAAATGGAAGGAACAAACAGTTTCCTAAAGAGAGCATTGAACCAAGCAGCAGATGTTAAAAGATGGCGCAAGCTTGCAGCAGATGCTAAATTTGTGGAGGATTGTCTTAAAAAGATCACTGAGACAAAAGACAGGTTTGATGTATCAGCGGCCGACAGTAGGAGAGATAATGCATTGAGTTATTCTAGCAGATTCCAACATATGTCTGAACACTCGTACCTGAATGATGATTTTGTGGGGAACAAGGAAGAGGTGAAGTGCTTAACAGAATGGCTATCTGATTTGAGGAAAGACCGCACTGTTATCTCCATATGTGGAATGGGAGGATTAGGTAAGACGACAATTGCTAGTAGCATTTACAAGAAGGAAGAAATTAAAAGAATGTTTATCTGCCGTGCATGGATCTCAGTATCTCAAAGCTACAGGGTTAAAGATCTCCTCCAAAAACTCTTACTGCAGCTTATTTCAAAAAATGAGAATATTCCGGATGGGCTTGACACTATGGATTGCGTGAATCTAGTTGAACTACTTAGAAGATATCTTAAGGACAGGAAATACTTAATTGTGTTGGATGATGTATGGAGTAGGGACTCTTGGCCTTTACTAGATAGTGCATTTGTCAAGAATGACAATGGGAGCCGAATTATTGTCACAACTCGAATCCAAGCTGTGGCATCTGTGGCTGATTCAAACCGTGAAATGAAGCTTAGCTTACTACCGAAGGAGGAAGCATGGACTCTTTTCTGTCAAAAGGCCTTCACAAGATTAGATGATAGAAGTTGCCCCCTCAGTCTTAAGACCTGTGCTGAAAGAATTGTAGGTAAGTGTCAAGGTTTGCCATTGGCTCTTGTTGCTTTAGGGAGTCTTCTATCCTACAAAGAAATGGATGAGCATGAGTGGGAATTGTTCTATAGACAACTTAGGTGGCAGCTGAGTAGCAACCCAATCAGTTACAACGATCTCCCTAGTTACTTGAAGAACTGTTTTCTTTACTTGGGTTTGTTCCCTGAAGACTATCAGATAGAACGGAAACAGCTAATCAGACTCTGGATAGCTGAAGGATTTGTTGAGGATAGAGGACCTGAGGTGACACTGGCAGATGTAGCTGCATGTTACCTGAAGGAGTTAACTGATCGTTCGTTGCTTCAAGTTGTTGACAGGAATGAATATGGAAGGCCAAAGAGGTTTCAGATGCATGACCTTGTGAGGGAGATATCTCTGACAATATCCAAGAAGGAAAAGTTTGCTATTACATGGGACTATCCTAACTCAGACTCCAGTTCTGATGGATCTCGTCGAGTCTCGGTACAGAAGGATGGTATTCTGATGCCGGTGAAAACTTCTGCACAGTTCAGGTCCATCATCATGTTTGTGGAGGAAGTATCATCGTCTTGGTTTAGGGACTGTTATCCAAGTTTTAGATTGTTGAGGGTCTTGAGCCTGAGACACTGCCATATTCAGAAAATTCCAGATATCATGTCTAATCTGTTTAACTTGCATTACCTTGACTTGGGATATACATTACTCAAGGAGATACCAAGATCTATTGGGAAGCTTAGCAATCTTCAGACGCTGTATCTCAAAGGTTCTGTACTCGAGTTGCCAAGTGAAGTAACTATGTTAACAAAGCTTCAGCACCTAATCATAGATGTTGGAAGGTTTGGCAGTTCAGCAAGTAACAAAATATGTCGCCAGGAACATCTGCAGACTCTGAAATACATAGAAGCCAACAGCTGCGTTGTTAGAAATCTTGGATGCTTGACTAGGATTAGAAGCCTTGGCATTAGGAAGGTGCTAGAATCCTACAACACAGATTTGTGGACTTCAGTAAGCAATATGAAAGCTTTGGCTGCGTTGTCTGTGATTTCTGCTGATCGCGACAGAGATATTCTTGATCTGTCAGACTTGAAACCGTTACCATACCTGGAGAAGCTTATGTTAAGCGGCAGGCTAGATAAAGGAGCTATTCCTCCTCCATTTGGCCACTTCCCCAGACTGAAAAGCTTGCGGCTTTGCTTTTCTGGGCTCCATGAAGACCCACTTGCTTTACTTGCTGTCATGTTTCAGAATCTAGGCCACCTTAACCTGTACCGGTGCTATGACGGTACGAGACTGACATTTCGTGCCAGGTGGTTCCCTATGCTCAAGCACCTCTACTTGAGCTCCATGGGTGAGTTGAAGGAGGTTGAGATTGAGGACGGCACCATGAGAGCCTTGCGTCGGCTAGAGCTCTGGGGCTTGAAAAGCTTGACGTCGGTACCAGAGGGCCTTGTACACCTTAAATCACTCCAACAGCTGTGCATTGGCTCGATGATGCCTGAAGAGTTCAAAACAAGGTTAGAAGGACGCGACCGATGGATTATTGAACACATCCCCTACATTGGAGATCCGTGA


Protein sequences

Name Description Sequence
hypothetical protein hypothetical protein SORBIDRAFT_02g004900 [Sorghum bicolor].

MAEALVIVVLQKITSALGAEGLKIIGSKLQKQVPDVQEVINRMRLLQSDLSMMQAFISQVDAHSSSDKLLGAWLEQVRQAAHDAEDIVDEYIYLVGQMEGTNSFLKRALNQAADVKRWRKLAADAKFVEDCLKKITETKDRFDVSAADSRRDNALSYSSRFQHMSEHSYLNDDFVGNKEEVKCLTEWLSDLRKDRTVISICGMGGLGKTTIASSIYKKEEIKRMFICRAWISVSQSYRVKDLLQKLLLQLISKNENIPDGLDTMDCVNLVELLRRYLKDRKYLIVLDDVWSRDSWPLLDSAFVKNDNGSRIIVTTRIQAVASVADSNREMKLSLLPKEEAWTLFCQKAFTRLDDRSCPLSLKTCAERIVGKCQGLPLALVALGSLLSYKEMDEHEWELFYRQLRWQLSSNPISYNDLPSYLKNCFLYLGLFPEDYQIERKQLIRLWIAEGFVEDRGPEVTLADVAACYLKELTDRSLLQVVDRNEYGRPKRFQMHDLVREISLTISKKEKFAITWDYPNSDSSSDGSRRVSVQKDGILMPVKTSAQFRSIIMFVEEVSSSWFRDCYPSFRLLRVLSLRHCHIQKIPDIMSNLFNLHYLDLGYTLLKEIPRSIGKLSNLQTLYLKGSVLELPSEVTMLTKLQHLIIDVGRFGSSASNKICRQEHLQTLKYIEANSCVVRNLGCLTRIRSLGIRKVLESYNTDLWTSVSNMKALAALSVISADRDRDILDLSDLKPLPYLEKLMLSGRLDKGAIPPPFGHFPRLKSLRLCFSGLHEDPLALLAVMFQNLGHLNLYRCYDGTRLTFRARWFPMLKHLYLSSMGELKEVEIEDGTMRALRRLELWGLKSLTSVPEGLVHLKSLQQLCIGSMMPEEFKTRLEGRDRWIIEHIPYIGDP

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
7-890 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

IVVLQKITSALGAEGLKIIGSKLQKQVPDVQEVINRMRLLQSDLSMMQAFISQVDAHSSSDKLLGAWLEQVRQAAHDAEDIVDEYIYLVGQMEGTNSFLKRALNQAADVKRWRKLAADAKFVEDCLKKITETKDRFDVSAADSRRDNALSYSSRFQHMSEHSYLNDDFVGNKEEVKCLTEWLSDLRKDRTVISICGMGGLGKTTIASSIYKKEEIKRMFICRAWISVSQSYRVKDLLQKLLLQLISKNENIPDGLDTMDCVNLVELLRRYLKDRKYLIVLDDVWSRDSWPLLDSAFVKNDNGSRIIVTTRIQAVASVADSNREMKLSLLPKEEAWTLFCQKAFTRLDDRSCPLSLKTCAERIVGKCQGLPLALVALGSLLSYKEMDEHEWELFYRQLRWQLSSNPISYNDLPSYLKNCFLYLGLFPEDYQIERKQLIRLWIAEGFVEDRGPEVTLADVAACYLKELTDRSLLQVVDRNEYGRPKRFQMHDLVREISLTISKKEKFAITWDYPNSDSSSDGSRRVSVQKDGILMPVKTSAQFRSIIMFVEEVSSSWFRDCYPSFRLLRVLSLRHCHIQKIPDIMSNLFNLHYLDLGYTLLKEIPRSIGKLSNLQTLYLKGSVLELPSEVTMLTKLQHLIIDVGRFGSSASNKICRQEHLQTLKYIEANSCVVRNLGCLTRIRSLGIRKVLESYNTDLWTSVSNMKALAALSVISADRDRDILDLSDLKPLPYLEKLMLSGRLDKGAIPPPFGHFPRLKSLRLCFSGLHEDPLALLAVMFQNLGHLNLYRCYDGTRLTFRARWFPMLKHLYLSSMGELKEVEIEDGTMRALRRLELWGLKSLTSVPEGLVHLKSLQQLCIGSMMPEEFKTRLEGRDRWIIEHIPYI

HMMPanther: PTHR23155:SF155
7-890 PTHR23155:SF155,OS07G0186500 PROTEIN

IVVLQKITSALGAEGLKIIGSKLQKQVPDVQEVINRMRLLQSDLSMMQAFISQVDAHSSSDKLLGAWLEQVRQAAHDAEDIVDEYIYLVGQMEGTNSFLKRALNQAADVKRWRKLAADAKFVEDCLKKITETKDRFDVSAADSRRDNALSYSSRFQHMSEHSYLNDDFVGNKEEVKCLTEWLSDLRKDRTVISICGMGGLGKTTIASSIYKKEEIKRMFICRAWISVSQSYRVKDLLQKLLLQLISKNENIPDGLDTMDCVNLVELLRRYLKDRKYLIVLDDVWSRDSWPLLDSAFVKNDNGSRIIVTTRIQAVASVADSNREMKLSLLPKEEAWTLFCQKAFTRLDDRSCPLSLKTCAERIVGKCQGLPLALVALGSLLSYKEMDEHEWELFYRQLRWQLSSNPISYNDLPSYLKNCFLYLGLFPEDYQIERKQLIRLWIAEGFVEDRGPEVTLADVAACYLKELTDRSLLQVVDRNEYGRPKRFQMHDLVREISLTISKKEKFAITWDYPNSDSSSDGSRRVSVQKDGILMPVKTSAQFRSIIMFVEEVSSSWFRDCYPSFRLLRVLSLRHCHIQKIPDIMSNLFNLHYLDLGYTLLKEIPRSIGKLSNLQTLYLKGSVLELPSEVTMLTKLQHLIIDVGRFGSSASNKICRQEHLQTLKYIEANSCVVRNLGCLTRIRSLGIRKVLESYNTDLWTSVSNMKALAALSVISADRDRDILDLSDLKPLPYLEKLMLSGRLDKGAIPPPFGHFPRLKSLRLCFSGLHEDPLALLAVMFQNLGHLNLYRCYDGTRLTFRARWFPMLKHLYLSSMGELKEVEIEDGTMRALRRLELWGLKSLTSVPEGLVHLKSLQQLCIGSMMPEEFKTRLEGRDRWIIEHIPYI

superfamily: SSF52540
157-410 SSF52540

YSSRFQHMSEHSYLNDDFVGNKEEVKCLTEWLSDLRKDRTVISICGMGGLGKTTIASSIYKKEEIKRMFICRAWISVSQSYRVKDLLQKLLLQLISKNENIPDGLDTMDCVNLVELLRRYLKDRKYLIVLDDVWSRDSWPLLDSAFVKNDNGSRIIVTTRIQAVASVADSNREMKLSLLPKEEAWTLFCQKAFTRLDDRSCPLSLKTCAERIVGKCQGLPLALVALGSLLSYKEMDEHEWELFYRQLRWQLSSN

Gene3D: G3DSA:3.40.50.300
177-292 G3DSA:3.40.50.300

NKEEVKCLTEWLSDLRKDRTVISICGMGGLGKTTIASSIYKKEEIKRMFICRAWISVSQSYRVKDLLQKLLLQLISKNENIPDGLDTMDCVNLVELLRRYLKDRKYLIVLDDVWSR

HMMPfam: PF00931
IPR002182
178-453 NB-ARC,NBS
NB-ARC

KEEVKCLTEWLSDLRKDRTVISICGMGGLGKTTIASSIYKKEEIKRMFICRAWISVSQSYRVKDLLQKLLLQLISKNENIPDGLDTMDCVNLVELLRRYLKDRKYLIVLDDVWSRDSWPLLDSAFVKNDNGSRIIVTTRIQAVASVADSNREMKLSLLPKEEAWTLFCQKAFTRLDDRSCPLSLKTCAERIVGKCQGLPLALVALGSLLSYKEMDEHEWELFYRQLRWQLSSNPISYNDLPSYLKNCFLYLGLFPEDYQIERKQLIRLWIAEGFVE

FPrintScan: PR00364
IPR000767
197-212 DISEASERSIST
Disease resistance protein

VISICGMGGLGKTTIA

FPrintScan: PR00364
IPR000767
276-290 DISEASERSIST
Disease resistance protein

YLKDRKYLIVLDDVW

FPrintScan: PR00364
IPR000767
372-386 DISEASERSIST
Disease resistance protein

CQGLPLALVALGSLL

Gene3D: G3DSA:3.80.10.10
400-426 G3DSA:3.80.10.10

YRQLRWQLSSNPISYNDLPSYLKNCFL

superfamily: SSF52058
493-866 SSF52058,LRR

QMHDLVREISLTISKKEKFAITWDYPNSDSSSDGSRRVSVQKDGILMPVKTSAQFRSIIMFVEEVSSSWFRDCYPSFRLLRVLSLRHCHIQKIPDIMSNLFNLHYLDLGYTLLKEIPRSIGKLSNLQTLYLKGSVLELPSEVTMLTKLQHLIIDVGRFGSSASNKICRQEHLQTLKYIEANSCVVRNLGCLTRIRSLGIRKVLESYNTDLWTSVSNMKALAALSVISADRDRDILDLSDLKPLPYLEKLMLSGRLDKGAIPPPFGHFPRLKSLRLCFSGLHEDPLALLAVMFQNLGHLNLYRCYDGTRLTFRARWFPMLKHLYLSSMGELKEVEIEDGTMRALRRLELWGLKSLTSVPEGLVHLKSLQQLCIGS

Gene3D: G3DSA:3.80.10.10
555-718 G3DSA:3.80.10.10

EEVSSSWFRDCYPSFRLLRVLSLRHCHIQKIPDIMSNLFNLHYLDLGYTLLKEIPRSIGKLSNLQTLYLKGSVLELPSEVTMLTKLQHLIIDVGRFGSSASNKICRQEHLQTLKYIEANSCVVRNLGCLTRIRSLGIRKVLESYNTDLWTSVSNMKALAALSVI

HMMPfam: PF13855
571-626 LRR_8,Leucine rich repeat

LLRVLSLRHCHIQKIPDIMSNLFNLHYLDLGYTLLKEIPRSIGKLSNLQTLYLKGS

Gene3D: G3DSA:3.80.10.10
732-863 G3DSA:3.80.10.10

LKPLPYLEKLMLSGRLDKGAIPPPFGHFPRLKSLRLCFSGLHEDPLALLAVMFQNLGHLNLYRCYDGTRLTFRARWFPMLKHLYLSSMGELKEVEIEDGTMRALRRLELWGLKSLTSVPEGLVHLKSLQQLC

FPrintScan: PR00364
IPR000767
830-846 DISEASERSIST
Disease resistance protein

GTMRALRRLELWGLKSL


List of References

Andrew H Paterson, John E Bowers, Rémy Bruggmann, Inna Dubchak, Jane Grimwood, Heidrun Gundlach, Georg Haberer, Uffe Hellsten, Therese Mitros, Alexander Poliakov, Jeremy Schmutz, Manuel Spannagl, Haibao Tang, Xiyin Wang, Thomas Wicker, Arvind K Bharti, Jarrod Chapman, F Alex Feltus, Udo Gowik, Igor V Grigoriev, Eric Lyons, Christopher A Maher, Mihaela Martis, Apurva Narechania, Robert P Otillar, Bryan W Penning, Asaf A Salamov, Yu Wang, Lifang Zhang, Nicholas C Carpita, Michael Freeling, Alan R Gingle, C Thomas Hash, Beat Keller, Patricia Klein, Stephen Kresovich, Maureen C McCann, Ray Ming, Daniel G Peterson, Mehboob-ur-Rahman, Doreen Ware, Peter Westhoff, Klaus F X Mayer, Joachim Messing, Daniel S Rokhsar
The Sorghum bicolor genome and the diversification of grasses.
Nature: 2009, 457(7229);551-6
PubMed:19189423 WorldCat.org DOI (I p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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