PRGDB00063860 (resistance gene candidate NBS-type protein)

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resistance gene candidate NBS-type protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 165967917 (EU239823)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Musa acuminata subsp. malaccensis

Comment?

Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC5) gene, partial cds.

DNA Sequence

ATGTCGACGGCGCTAGTAATCGGAGGATGGTTCGCGCAAAGCTTCATCCAGACGTTGCTCGACAAGGCCAGCAACTGCGCGATCCAACAACTCGCGCGGTGCCGCGGCCTTCACGATGACCTGAGGCGGCTGCGGACGTCTCTGCTCCGGATCCATGCCATCCTCGACAAGGCAGAGACGAGGTGGAACCATAAAAACACGAGCTTGGTGGAGCTGGTGAGGCAGCTCAAGGATGCTGCCTATGACGCCGAGGACTTACTGGAGGAGTTGGAGTACCAAGCCGCGAAGCAAAAGGTCGAGCACCGGGGAGACCAGATAAGCGACCTCTTTTCTTTTTCCCCTAGTACTGCGAGCGAGTGGTTGGGTGCCGATGGTGATGATGCTGGGACTCGATTGAGGGAGATCCAGGAGAAGCTGTGCAACATTGCTGCCGATATGATGGATGTCATGCAGCTATTGGCACCCGATGATGGGGGGAGACAATTCGACTGGAAGGTGGTGGGAAGAGAAACGAGCTCTTTCTTGACCGAAACCGTCGTGTTTGGTCGGGGCCAAGAAAGGGAGAAAGTAGTAGAATTGCTGTTGGATTCAGGATCTGGTAACAGTAGCTTCTCTGTCTTACCCCTCGTCGGAATCGGAGGGGTTGGGAAGACGACTCTGGCTCAGCTCGTGTACAACGACAATCGTGTCGGCAACTATTTCCACCTCAAGGTTTGGGTCTGTGTATCCGACAATTTCAATGTGAAGAGACTGACCAAAGAGATAATCGAGTCTGCTACCAAGGTGGAACAATCTGACGAATTGAACTTGGACACCCTGCAACAGATCCTCAAGGAGAAGATTGCTTCAGAGAGGTTTCTGCTAGTCCTCGATGATGTGTGGAGCGAAAACAGGGATGACTGGGAAAGGCTGTGCGCGCCACTAAGGTTTGCAGCAAGAGGCAGCAAGGTTATAGTCACAACTCGAGACACAAAGATTGCCAGCATCATTGGCACAATGAAGGAAATTTCGCTCGATGGTCTCCAGGATGATGCTTACTGGGAGCTGTTCAAGAAATGTGCATTTGGTTCTGTGAACCCCCAGGAGCATCTAGAGCTCGAGGTTATCGGTAGAAAGATTGCTGGTAAGTTGAAGGGCTCACCGCTAGCAG


Protein sequences

Name Description Sequence
resistance gene candidate NBS-type protein resistance gene candidate NBS-type protein [Musa acuminata subsp. malaccensis].

MSTALVIGGWFAQSFIQTLLDKASNCAIQQLARCRGLHDDLRRLRTSLLRIHAILDKAETRWNHKNTSLVELVRQLKDAAYDAEDLLEELEYQAAKQKVEHRGDQISDLFSFSPSTASEWLGADGDDAGTRLREIQEKLCNIAADMMDVMQLLAPDDGGRQFDWKVVGRETSSFLTETVVFGRGQEREKVVELLLDSGSGNSSFSVLPLVGIGGVGKTTLAQLVYNDNRVGNYFHLKVWVCVSDNFNVKRLTKEIIESATKVEQSDELNLDTLQQILKEKIASERFLLVLDDVWSENRDDWERLCAPLRFAARGSKVIVTTRDTKIASIIGTMKEISLDGLQDDAYWELFKKCAFGSVNPQEHLELEVIGRKIAGKLKGSPLA

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF121
12-317 PTHR23155:SF121,SUBFAMILY NOT NAMED

AQSFIQTLLDKASNCAIQQLARCRGLHDDLRRLRTSLLRIHAILDKAETRWNHKNTSLVELVRQLKDAAYDAEDLLEELEYQAAKQKVEHRGDQISDLFSFSPSTASEWLGADGDDAGTRLREIQEKLCNIAADMMDVMQLLAPDDGGRQFDWKVVGRETSSFLTETVVFGRGQEREKVVELLLDSGSGNSSFSVLPLVGIGGVGKTTLAQLVYNDNRVGNYFHLKVWVCVSDNFNVKRLTKEIIESATKVEQSDELNLDTLQQILKEKIASERFLLVLDDVWSENRDDWERLCAPLRFAARGSKV

HMMPanther: PTHR23155
12-317 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

AQSFIQTLLDKASNCAIQQLARCRGLHDDLRRLRTSLLRIHAILDKAETRWNHKNTSLVELVRQLKDAAYDAEDLLEELEYQAAKQKVEHRGDQISDLFSFSPSTASEWLGADGDDAGTRLREIQEKLCNIAADMMDVMQLLAPDDGGRQFDWKVVGRETSSFLTETVVFGRGQEREKVVELLLDSGSGNSSFSVLPLVGIGGVGKTTLAQLVYNDNRVGNYFHLKVWVCVSDNFNVKRLTKEIIESATKVEQSDELNLDTLQQILKEKIASERFLLVLDDVWSENRDDWERLCAPLRFAARGSKV

superfamily: SSF52540
180-383 SSF52540

VFGRGQEREKVVELLLDSGSGNSSFSVLPLVGIGGVGKTTLAQLVYNDNRVGNYFHLKVWVCVSDNFNVKRLTKEIIESATKVEQSDELNLDTLQQILKEKIASERFLLVLDDVWSENRDDWERLCAPLRFAARGSKVIVTTRDTKIASIIGTMKEISLDGLQDDAYWELFKKCAFGSVNPQEHLELEVIGRKIAGKLKGSPLA

Gene3D: G3DSA:3.40.50.300
181-293 G3DSA:3.40.50.300

FGRGQEREKVVELLLDSGSGNSSFSVLPLVGIGGVGKTTLAQLVYNDNRVGNYFHLKVWVCVSDNFNVKRLTKEIIESATKVEQSDELNLDTLQQILKEKIASERFLLVLDDV

HMMPfam: PF00931
IPR002182
187-383 NB-ARC,NBS
NB-ARC

REKVVELLLDSGSGNSSFSVLPLVGIGGVGKTTLAQLVYNDNRVGNYFHLKVWVCVSDNFNVKRLTKEIIESATKVEQSDELNLDTLQQILKEKIASERFLLVLDDVWSENRDDWERLCAPLRFAARGSKVIVTTRDTKIASIIGTMKEISLDGLQDDAYWELFKKCAFGSVNPQEHLELEVIGRKIAGKLKGSPLA

FPrintScan: PR00364
IPR000767
206-221 DISEASERSIST
Disease resistance protein

VLPLVGIGGVGKTTLA

FPrintScan: PR00364
IPR000767
280-294 DISEASERSIST
Disease resistance protein

KIASERFLLVLDDVW

FPrintScan: PR00364
IPR000767
377-383 DISEASERSIST
Disease resistance protein

LKGSPLA






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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