PRGDB00063862 (resistance gene candidate NBS-type protein)

From PRG Wiki
Jump to: navigation, search
resistance gene candidate NBS-type protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 165967913 (EU239821)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Musa acuminata subsp. malaccensis

Comment?

Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC3) gene, partial cds.

DNA Sequence

ATGTGCGATCTCGTCTCCCTTGCATGCCAAGCCTCACAACCTTTATGCACAGCCTGCCTGATTCCTGTACATGATGAGATTAAGGAAACTTTGACCGCGTGCTTTCAACTCCGCCGGAACCGGAGCTCTCTCACGGAAGCGCTAAGCGACCTACGGGCCACCGCACAGAAAGTGAAGGACAAGGTCGAGGAAGAGGAGGCTCACCAGCGGATCTGCAATCCTGATGTCAGACGGTGGCAGAAGAAGGTCGAGGAGATACTCCGGGAATGCGACGCCGACCAGGAGCACGAGGAACCAAAGAGATGCGCCTGCCTGTGTGGCTGCGACATGGATCTGCTCCACCGTCGCCGAGTCGCCAGGAAAGTCGTCCAGAATCTGCAGGACGTGAACAAGCTGAAGTCAGATGGCGATGCATTCACTCCCCCCTTCACCCACGAGCCGCCACCGGAGCCGGTGGAGGAACTGCCGTTTGAAACGCAGACCATCGGGATGGAGTCGGCCCTAAGCCAGCTCCTATCCCGGTTTGACGACGCGGAGAAGAGCATCATCGGCGTCCACGGGCTAGGGGGCATGGGCAAGACGACGCTCCTCAAAACGCTCAACAACGAGCTCAAGGAGAATACCCGCGATTACCATGTGGTGATCATGATCGAGGTTGCCAACTCCGAGACGCTCAACGTGGTCGATATGCAGAAGATCATCGCCAATCGGCTGGGTCTGCCGTGGAACGAGAGCGAGACGGAGAGGGAGCGATCCACATTTCTGCGCAGGGCCCTGAGGAGGAAGAAGTTCGTTGTCCTGCTCGACGACGTCTGGAAAAAGTTCCAGTTGGCGGACGTGGGAATCCCCACGCCAAGCTCCGACAACGGGTGGAAGCTGATCCTCGCCTCGCGGTCGAACCAGGTGTGCGTCGAGATGGGCGACAAGGAGCCCATGGAGATGCCCTGCTTGGGCGACAATGAATCGCTGAGGTTGTTCCGGAGCAACTTGATGGCCGAGGTCAGTGCCGCCATCGACCATGACAGCGACATGAGAAGAAGCGCCATGGATATCATACAGAGCTGCGGCGGCCTTCCACTAGCA


Protein sequences

Name Description Sequence
resistance gene candidate NBS-type protein resistance gene candidate NBS-type protein [Musa acuminata subsp. malaccensis].

MCDLVSLACQASQPLCTACLIPVHDEIKETLTACFQLRRNRSSLTEALSDLRATAQKVKDKVEEEEAHQRICNPDVRRWQKKVEEILRECDADQEHEEPKRCACLCGCDMDLLHRRRVARKVVQNLQDVNKLKSDGDAFTPPFTHEPPPEPVEELPFETQTIGMESALSQLLSRFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVWKKFQLADVGIPTPSSDNGWKLILASRSNQVCVEMGDKEPMEMPCLGDNESLRLFRSNLMAEVSAAIDHDSDMRRSAMDIIQSCGGLPLA

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF108
12-353 PTHR23155:SF108,SUBFAMILY NOT NAMED

SQPLCTACLIPVHDEIKETLTACFQLRRNRSSLTEALSDLRATAQKVKDKVEEEEAHQRICNPDVRRWQKKVEEILRECDADQEHEEPKRCACLCGCDMDLLHRRRVARKVVQNLQDVNKLKSDGDAFTPPFTHEPPPEPVEELPFETQTIGMESALSQLLSRFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVWKKFQLADVGIPTPSSDNGWKLILASRSNQVCVEMGDKEPMEMPCLGDNESLRLFRSNLMAEVSAAIDHDSDMRRSAMDIIQ

HMMPanther: PTHR23155
12-353 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

SQPLCTACLIPVHDEIKETLTACFQLRRNRSSLTEALSDLRATAQKVKDKVEEEEAHQRICNPDVRRWQKKVEEILRECDADQEHEEPKRCACLCGCDMDLLHRRRVARKVVQNLQDVNKLKSDGDAFTPPFTHEPPPEPVEELPFETQTIGMESALSQLLSRFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVWKKFQLADVGIPTPSSDNGWKLILASRSNQVCVEMGDKEPMEMPCLGDNESLRLFRSNLMAEVSAAIDHDSDMRRSAMDIIQ

superfamily: SSF52540
144-361 SSF52540

THEPPPEPVEELPFETQTIGMESALSQLLSRFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVWKKFQLADVGIPTPSSDNGWKLILASRSNQVCVEMGDKEPMEMPCLGDNESLRLFRSNLMAEVSAAIDHDSDMRRSAMDIIQSCGGLPLA

HMMPfam: PF00931
IPR002182
169-361 NB-ARC,NBS
NB-ARC

SQLLSRFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVWKKFQLADVGIPTPSSDNGWKLILASRSNQVCVEMGDKEPMEMPCLGDNESLRLFRSNLMAEVSAAIDHDSDMRRSAMDIIQSCGGLPLA

Gene3D: G3DSA:3.40.50.300
174-272 G3DSA:3.40.50.300

RFDDAEKSIIGVHGLGGMGKTTLLKTLNNELKENTRDYHVVIMIEVANSETLNVVDMQKIIANRLGLPWNESETERERSTFLRRALRRKKFVVLLDDVW

FPrintScan: PR00364
IPR000767
182-197 DISEASERSIST
Disease resistance protein

IIGVHGLGGMGKTTLL

FPrintScan: PR00364
IPR000767
258-272 DISEASERSIST
Disease resistance protein

ALRRKKFVVLLDDVW

FPrintScan: PR00364
IPR000767
355-361 DISEASERSIST
Disease resistance protein

CGGLPLA






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox