PRGDB00063864 (resistance gene candidate NBS-type protein)

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resistance gene candidate NBS-type protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 165967909 (EU239819)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Musa acuminata subsp. malaccensis

Comment?

Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC1) gene, partial cds.

DNA Sequence

ATGGAGTCTTTTCTCATCCTCGTTGCCGAAAAGATTGCCGTGGCCATGGCCGGCGAAGCTATACAGGCAGCTATGGGCTTCAATTTAGGAGCCGAAGAATCGCTGAAGACGGAAGTTAAGGAGACGATCAGACGGATCAGAAGCGAGTTCGAGCACATGCAAATATTTTTAAGCTCCGTGGACATGCAGAAGTATAACACCACCATTGAGCCATGGCTGAAACGAGCGAGGGAGATAGCAGATTCCATGGAAGACGTGATCGACGAGTACTTGCATATTACCGTAGAGCGGTCACAGGGTGGACTCAGATCCTTTTTTAATCAAGCTGTGAGAAGTCACAAAAAGAGTAGCGCCTGGAATCTCATAGCTAATCGGCTGAAAAGTTATAGAAGCTGGCCTATCCATCTCGAAGCCATGAAGGATCGCTATGACATCAGGAAGAATGAGTCCGAAGTAGATGATGATGACGCCGAAGGCGAGAATGCAAACGGCCTTGTCGGAAGAGTGTTCAATTCGTCGAGATCAAACCCTGTCAGGGAAGAAGACGACAATATTTACAGAGAACAAAGGAAAATTTTGTTTCAGCTGCTAACAGATGAAACGTCTACACGCACGGTGATATCGGTTTGGGGCATGGGGGGTGTAGGTAAGACCACCATGGTTGACAAAGTTTACGGGAACCAGGAGATCGAGAATCGCTTCGACTGCAAAATCTGGGTCACCGTTTCCAAGTCTTGTCGAATCGAACATTCGATGCGAAGAATTCTCAAGGAACTGCTGGACGCAGATCAATCGGATCATGATAGTAATGGGTCGTCGGACCTTAATCGTTTACAGGAGGACGTTTGCAGCATTCTACAGGAGAAGAGGTACTTGCTGATTCTCGATGATGTGTGGAGCGGAGAGTTGTCTTCCTATGTGCAACGTGCTCTTCCCGATAACAATCGTGGAAGCAGAATAGTGATCACGACACGGCTAAACGAGGTAGCTTCGACATCAGAAGAGAGGCACCGGTTGAAGCTTCGGAAAATTGAAGATGAAGGCCAAGCGTTCGATCTGTTCTGTCGAGAGGTATTCTGGCATGCCGACGACAGGCGTTGCCCCAAACACTTGGAGACGGTGGGGAGAAATATTGTCAGGAAGTGCCAAGGCCTGCCACTGGCCA


Protein sequences

Name Description Sequence
resistance gene candidate NBS-type protein resistance gene candidate NBS-type protein [Musa acuminata subsp. malaccensis].

MESFLILVAEKIAVAMAGEAIQAAMGFNLGAEESLKTEVKETIRRIRSEFEHMQIFLSSVDMQKYNTTIEPWLKRAREIADSMEDVIDEYLHITVERSQGGLRSFFNQAVRSHKKSSAWNLIANRLKSYRSWPIHLEAMKDRYDIRKNESEVDDDDAEGENANGLVGRVFNSSRSNPVREEDDNIYREQRKILFQLLTDETSTRTVISVWGMGGVGKTTMVDKVYGNQEIENRFDCKIWVTVSKSCRIEHSMRRILKELLDADQSDHDSNGSSDLNRLQEDVCSILQEKRYLLILDDVWSGELSSYVQRALPDNNRGSRIVITTRLNEVASTSEERHRLKLRKIEDEGQAFDLFCREVFWHADDRRCPKHLETVGRNIVRKCQGLPLA

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF121
6-360 PTHR23155:SF121,SUBFAMILY NOT NAMED

ILVAEKIAVAMAGEAIQAAMGFNLGAEESLKTEVKETIRRIRSEFEHMQIFLSSVDMQKYNTTIEPWLKRAREIADSMEDVIDEYLHITVERSQGGLRSFFNQAVRSHKKSSAWNLIANRLKSYRSWPIHLEAMKDRYDIRKNESEVDDDDAEGENANGLVGRVFNSSRSNPVREEDDNIYREQRKILFQLLTDETSTRTVISVWGMGGVGKTTMVDKVYGNQEIENRFDCKIWVTVSKSCRIEHSMRRILKELLDADQSDHDSNGSSDLNRLQEDVCSILQEKRYLLILDDVWSGELSSYVQRALPDNNRGSRIVITTRLNEVASTSEERHRLKLRKIEDEGQAFDLFCREVFW

HMMPanther: PTHR23155
6-360 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

ILVAEKIAVAMAGEAIQAAMGFNLGAEESLKTEVKETIRRIRSEFEHMQIFLSSVDMQKYNTTIEPWLKRAREIADSMEDVIDEYLHITVERSQGGLRSFFNQAVRSHKKSSAWNLIANRLKSYRSWPIHLEAMKDRYDIRKNESEVDDDDAEGENANGLVGRVFNSSRSNPVREEDDNIYREQRKILFQLLTDETSTRTVISVWGMGGVGKTTMVDKVYGNQEIENRFDCKIWVTVSKSCRIEHSMRRILKELLDADQSDHDSNGSSDLNRLQEDVCSILQEKRYLLILDDVWSGELSSYVQRALPDNNRGSRIVITTRLNEVASTSEERHRLKLRKIEDEGQAFDLFCREVFW

superfamily: SSF52540
167-388 SSF52540

GRVFNSSRSNPVREEDDNIYREQRKILFQLLTDETSTRTVISVWGMGGVGKTTMVDKVYGNQEIENRFDCKIWVTVSKSCRIEHSMRRILKELLDADQSDHDSNGSSDLNRLQEDVCSILQEKRYLLILDDVWSGELSSYVQRALPDNNRGSRIVITTRLNEVASTSEERHRLKLRKIEDEGQAFDLFCREVFWHADDRRCPKHLETVGRNIVRKCQGLPLA

Gene3D: G3DSA:3.40.50.300
184-311 G3DSA:3.40.50.300

NIYREQRKILFQLLTDETSTRTVISVWGMGGVGKTTMVDKVYGNQEIENRFDCKIWVTVSKSCRIEHSMRRILKELLDADQSDHDSNGSSDLNRLQEDVCSILQEKRYLLILDDVWSGELSSYVQRAL

HMMPfam: PF00931
IPR002182
191-388 NB-ARC,NBS
NB-ARC

KILFQLLTDETSTRTVISVWGMGGVGKTTMVDKVYGNQEIENRFDCKIWVTVSKSCRIEHSMRRILKELLDADQSDHDSNGSSDLNRLQEDVCSILQEKRYLLILDDVWSGELSSYVQRALPDNNRGSRIVITTRLNEVASTSEERHRLKLRKIEDEGQAFDLFCREVFWHADDRRCPKHLETVGRNIVRKCQGLPLA

FPrintScan: PR00364
IPR000767
206-221 DISEASERSIST
Disease resistance protein

VISVWGMGGVGKTTMV

FPrintScan: PR00364
IPR000767
285-299 DISEASERSIST
Disease resistance protein

ILQEKRYLLILDDVW

FPrintScan: PR00364
IPR000767
382-388 DISEASERSIST
Disease resistance protein

CQGLPLA






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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