PRGDB00063884 (Zm.86)
| Zm.86 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 3668114 (Y15069) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Zea mays |
DNA Sequence
GGCACGAGCTCGGCTGCTACGTAGCTATATATAGCTGCAGAACAGTTTTAGTTACCGGACTGTAGGCACACCAAGCTAGATATCCAAGGGGCCCCCCCGGAAACTAGCTAGCTAGGATGCCAACAGCAGAGGCGACGACGCCCGTGCCGCCGGAGCTGTCCTCCGGGCAAGGGCGGACGGTTTGCGTGACCGGAGCTGGAGGGTTCATTGCCTCCTGGCTCGTCAAGCGCCTCCTGGAGAAGGGCTACACAGTCCGCGGCACGGTCAGGAACCCTGTGGATCCAAAGAACGACCACCTGAGGGCCCTTGACGGCGCCGTCGACCGTCTCGTCCTCCTCCGCGCCGACCTGCTGGACCCACAGAGCCTTGCCGAGGCCTTCTCCGGCTGTGACGGCGTCTTCCACGCCGCCTCCCCGGTCACCGATGACCCTGAGATGATGATCGAGCCAGCGATCCGGGGCACGCGCTACGTGATGGCGGCGGCGGACGACGCCGGAGTGAAGCGCGTCGTGTTCACGTCCTCCATCGGCACCGTGTACATGAACCCCTACCGTGACCCCAGCAAGCCTGTGGACGACACCTGCTGGAGCGACCTCGAGTATTGCAAGAACACCCAGAACTGGTACTGCTACGCCAAGACGGTGGCGGAGCAGGGCGCGTGGGAGGTGGCGCGGAAGCGAGGGCTGGACCTGGTGGTGGTGAACCCGGTGCTGGTGCTGGGCCCGCTGCTGCAGCCGACGGTGAACGCCAGCACGGACCACGTGATGAAGTACCTGACGGGGTCGGCCACGACCTACGTGAACGCGGCGCAGGCGTACGTGCACGTCAGGGACGTGGCCGAGGCGCACGTCCGGGTGTACGAGGCGCCCCACGCGCACGGCCGCTACATCTGCGCCGAGAGCACCCTGCACCGCGGCGACCTCTGCCGCGTCCTCGCCAAGCTCTTCCCGGAGTACCCCGTACCCACCAAGTGCAAGGACCAGGTTAACCCTCCGGTGGTAGGATACAAGTTCACCAACCAGAGGCTCAAGGATCTGGGGATGGACTTCGTGCCGGTCCTGCAGTGCCTCTACGAGACGGTCACCAGCCTCCAGGAGAAAGGCATGCTGCCCGTGCTTCCGACAAAACAAGACCATGACCAACTCGGCAAATCATGATCATATTCATATCCCTCGTTGACGATACTAGCTGCTGCTACCACGcatatcatatcatatatataagatatatatatatatagtggattcatatagttaaccttatatatatgtgtgtgtgtgtgtgttattgtgtgttattagtgtgtACAATTAAATGGCAACTCTAATGGGTGCATGCATCTGCATGCATGCTTTCCTGACAAGTGCCACACATGCATGCAATGTATCTCTTTGGACGATTTATATACAATACTCCGTTGCCAAATaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.86 | translated coding region predicted by ESTScan from UniGene Zm.86 | MPTAEATTPVPPELSSGQGRTVCVTGAGGFIASWLVKRLLEKGYTVRGTVRNPVDPKNDHLRALDGAVDRLVLLRADLLDPQSLAEAFSGCDGVFHAASPVTDDPEMMIEPAIRGTRYVMAAADDAGVKRVVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQNWYCYAKTVAEQXRVGGGAEARAGPGGGEPGAGAGPAAAADGERQHGPRDEVPDGVGHDLRERGAGVRARQGRGRGARPGVRGAPRARPLHLRREHPAPRRPLPRPRQALPGVPRTHQVQGPGXPSGGRIQVHQPEAQGSGDGLRAGPAVPLRDGHQPPGERHAARASDKTRP |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 2-13 | seg | PTAEATTPVPPE |
| HMMPanther: PTHR10366 | 4-179 | FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE | AEATTPVPPELSSGQGRTVCVTGAGGFIASWLVKRLLEKGYTVRGTVRNPVDPKNDHLRALDGAVDRLVLLRADLLDPQSLAEAFSGCDGVFHAASPVTDDPEMMIEPAIRGTRYVMAAADDAGVKRVVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQNWYCYAKTVAEQ |
| HMMPanther: PTHR10366:SF9 | 4-179 | CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE | AEATTPVPPELSSGQGRTVCVTGAGGFIASWLVKRLLEKGYTVRGTVRNPVDPKNDHLRALDGAVDRLVLLRADLLDPQSLAEAFSGCDGVFHAASPVTDDPEMMIEPAIRGTRYVMAAADDAGVKRVVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQNWYCYAKTVAEQ |
| superfamily: SSF51735 | 18-179 | NAD(P)-binding Rossmann-fold domains | QGRTVCVTGAGGFIASWLVKRLLEKGYTVRGTVRNPVDPKNDHLRALDGAVDRLVLLRADLLDPQSLAEAFSGCDGVFHAASPVTDDPEMMIEPAIRGTRYVMAAADDAGVKRVVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQNWYCYAKTVAEQ |
| Gene3D: G3DSA:3.40.50.720 IPR016040
|
19-179 | no description NAD(P)-binding domain
|
GRTVCVTGAGGFIASWLVKRLLEKGYTVRGTVRNPVDPKNDHLRALDGAVDRLVLLRADLLDPQSLAEAFSGCDGVFHAASPVTDDPEMMIEPAIRGTRYVMAAADDAGVKRVVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQNWYCYAKTVAEQ |
| HMMPfam: PF01370 IPR001509
|
22-179 | Epimerase NAD-dependent epimerase/dehydratase
|
VCVTGAGGFIASWLVKRLLEKGYTVRGTVRNPVDPKNDHLRALDGAVDRLVLLRADLLDPQSLAEAFSGCDGVFHAASPVTDDPEMMIEPAIRGTRYVMAAADDAGVKRVVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQNWYCYAKTVAEQ |
| Seg: seg | 67-80 | seg | AVDRLVLLRADLLD |
| Seg: seg | 183-210 | seg | GGGAEARAGPGGGEPGAGAGPAAAADGE |
| Seg: seg | 230-278 | seg | RGAGVRARQGRGRGARPGVRGAPRARPLHLRREHPAPRRPLPRPRQALP |
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