PRGDB00063891 (Zm.382)
| Zm.382 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 3360288 (AF023164) |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR |
| Gene Species | Zea mays |
DNA Sequence
TTGACCCCAACGATCTTAACGTCCTCAACACGCTCTTCACCAGTCTGAATTCTCCTGGGCAGCTCACAGGTTGGCAGGCGAATGGGGGTGATCCTTGTGGCCAGTCATGGAAGGGCATTACTTGCTCAGGATCAGGGGTCACTAAAATCCAATTACCTAACTTGTCACTCACTGGAAATTTGGCCTACAACATGAATAACTTGGGTTCATTAGTTGAGCTTGACATGAGCCAAAATAACCTTGGCGGTGGAGGTCAAGTACAGTACAATCTTCCCAATATGAAGCTTGAGAAACTCAATCTTGCAGGAAATCAATTTGGTGGAAATTTACCCTACTCAATTTCGACGATGCCTAATCTTAAGTATTTAAACCTTAATCATAACCAACTACAAGGAAACATCAGTGATGTATTTTCCAACCTTTACAGTTTGTCAGAACTGGATCTGTCCTTTAATTCCCTTACTGGTGATCTACCACAAAGTTTCACTGGATTGTCAAGCCTGAAAAAAGTGTATTTGCAGAACAACCAATTTACTGGTAATATCAATGTCTTAGCCAATCTCCCCCTTGAAACTTTGAATGTTGCGAACAACCATTTCACTGGTTGGATTCCTAGTCAGCTTAAGAAGATAAACAGTCTACAGACTGATGGAAATTCTTGGAGCACAGGACCAGCGCCACCTCCACCTCCATACACAGCGCCGCCTCCTCCTCCAAACCATTGGAATGCTGATGGTTCATCAAGTTCATCAAGTTCTGGTGGAAGATCTGGGATAGGTGGTGGAGGTGTAGCAGGAATCATTATATCGTTGCTGGTTGTTGGATCAGTTGTTGCATTTCTTGTGATCAAAAGAAGAAAACGCAAAGCTGCTATGAAAGAACATTTTGAACAGCACCAGCCATTCACTTCCTTCCCTTCAAATGAAGTTAAAGACATGAAGCCTGTCTGCGAGGCCACCACAGTAGACATAGAGTCTTTGGCTTCACCTGCTTCAGTTAATCTGAAACCACCTCCGAAGATAGAACGAAACAAATCATTTGATGATGACGATGATTTTTCAAACAAGCTTGTTGCAAAGAAAAGTAATATAACACCTATAAATGCAACTGTTTATTCAGTTGCAGATCTACAGATGGCAACAGATAGCTTTAGCTTCGACAACCTTGTTGGAGAGGGTACTTTTGGACGTGTTTACAGGGCACAATTCAATGATGGAAAGGTTCTGGCGATCAAGAAATTAGATAGTACTGTGATGCCATTTCAATCATCTGATGACTTTGCTGAACTGGTCTCGAACATTTCAAAATTGCACCATCCGAATCTGAATGAGCTTGTGGGCTATTGCATGGAACATGGCCAGCACTTGCTTGTGTATGATTTCCACAGGAATGGATCACTTCATGATCTACTCCACCTTTCAGATGAGTACAGCAAGCCACTTAGCTGGAACACTCGTATCAAGATCGCACTCGGCTCTGCCCGTGCACTGGAGTACCTTCATGAAATATGTTCTCCATCCATCATCCATAAGAATTTCAAGTCGTCAAACATTTTGCTGGACTCAGAATTCAATCCACACCTTTCAGATGCTGGACTTGCAAGCTTTATTCCTGATGCTGAATTCCAGGCAGCAGAACAAAGTGCCGGATACACTGCCCCAGAAGTGGACATGACCGGTCAGTACACCTTCAAGAGTGATGTCTACAGCTTTGGAGTTGTCATGCTTGAACTATTGACAGGACGTAGACCATTTGACAGCTCTAGACCCAGGTCAGAGCAGTCACTTGTGCGGTGGGCAACACCCCAGCTGCATGACATCGACGCATTGGACAGGATGGTCGATCCTGCACTCAAGGGTCTATACCCAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGACTTGTGCAGAGGGCCAACATGACGAAGAGGATGCTTGATGGGGATACTTCTCGGCGACCAGATGACCTGGACCAAGATTTCATATGACAAGCTGAACTCTTGTCAGATTGTATTTATTTCGTTCGACTAGCGGCCCAAGCAAGAGACATAATCACACAAGAGGAAGAAACAGAACTCTGTCAGCTTCGCCAGTACATAATCACAAGTTTTTCCTGGTAGCAAAGTTGTGCTATATGGTTGTACTGTGTCTACAAAATAGTACCTTGATCTTACGCTAATGGCATATTGTTATAATTCTTTGGTAACTTATATGCAAATCCCCAGATAAACaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.382 | translated coding region predicted by ESTScan from UniGene Zm.382 | XDPNDLNVLNTLFTSLNSPGQLTGWQANGGDPCGQSWKGITCSGSGVTKIQLPNLSLTGNLAYNMNNLGSLVELDMSQNNLGGGGQVQYNLPNMKLEKLNLAGNQFGGNLPYSISTMPNLKYLNLNHNQLQGNISDVFSNLYSLSELDLSFNSLTGDLPQSFTGLSSLKKVYLQNNQFTGNINVLANLPLETLNVANNHFTGWIPSQLKKINSLQTDGNSWSTGPAPPPPPYTAPPPPPNHWNADGSSSSSSSGGRSGIGGGGVAGIIISLLVVGSVVAFLVIKRRKRKAAMKEHFEQHQPFTSFPSNEVKDMKPVCEATTVDIESLASPASVNLKPPPKIERNKSFDDDDDFSNKLVAKKSNITPINATVYSVADLQMATDSFSFDNLVGEGTFGRVYRAQFNDGKVLAIKKLDSTVMPFQSSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPLSWNTRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIPDAEFQAAEQSAGYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALVRLVQRANMTKRMLDGDTSRRPDDLDQDFI |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420:SF463 | 2-685 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | DPNDLNVLNTLFTSLNSPGQLTGWQANGGDPCGQSWKGITCSGSGVTKIQLPNLSLTGNLAYNMNNLGSLVELDMSQNNLGGGGQVQYNLPNMKLEKLNLAGNQFGGNLPYSISTMPNLKYLNLNHNQLQGNISDVFSNLYSLSELDLSFNSLTGDLPQSFTGLSSLKKVYLQNNQFTGNINVLANLPLETLNVANNHFTGWIPSQLKKINSLQTDGNSWSTGPAPPPPPYTAPPPPPNHWNADGSSSSSSSGGRSGIGGGGVAGIIISLLVVGSVVAFLVIKRRKRKAAMKEHFEQHQPFTSFPSNEVKDMKPVCEATTVDIESLASPASVNLKPPPKIERNKSFDDDDDFSNKLVAKKSNITPINATVYSVADLQMATDSFSFDNLVGEGTFGRVYRAQFNDGKVLAIKKLDSTVMPFQSSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPLSWNTRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIPDAEFQAAEQSAGYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALVRLVQRANMTKRMLDGDTSRRPDDLDQDFI |
| HMMPanther: PTHR24420 | 2-685 | FAMILY NOT NAMED,FAMILY NOT NAMED | DPNDLNVLNTLFTSLNSPGQLTGWQANGGDPCGQSWKGITCSGSGVTKIQLPNLSLTGNLAYNMNNLGSLVELDMSQNNLGGGGQVQYNLPNMKLEKLNLAGNQFGGNLPYSISTMPNLKYLNLNHNQLQGNISDVFSNLYSLSELDLSFNSLTGDLPQSFTGLSSLKKVYLQNNQFTGNINVLANLPLETLNVANNHFTGWIPSQLKKINSLQTDGNSWSTGPAPPPPPYTAPPPPPNHWNADGSSSSSSSGGRSGIGGGGVAGIIISLLVVGSVVAFLVIKRRKRKAAMKEHFEQHQPFTSFPSNEVKDMKPVCEATTVDIESLASPASVNLKPPPKIERNKSFDDDDDFSNKLVAKKSNITPINATVYSVADLQMATDSFSFDNLVGEGTFGRVYRAQFNDGKVLAIKKLDSTVMPFQSSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPLSWNTRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIPDAEFQAAEQSAGYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALVRLVQRANMTKRMLDGDTSRRPDDLDQDFI |
| HMMPfam: PF08263 IPR013210
|
3-43 | LRRNT_2 Leucine-rich repeat-containing N-terminal domain,
|
PNDLNVLNTLFTSLNSPGQLTGWQANGGDPCGQSWKGITCS |
| Gene3D: G3DSA:3.80.10.10 | 8-223 | no description | VLNTLFTSLNSPGQLTGWQANGGDPCGQSWKGITCSGSGVTKIQLPNLSLTGNLAYNMNNLGSLVELDMSQNNLGGGGQVQYNLPNMKLEKLNLAGNQFGGNLPYSISTMPNLKYLNLNHNQLQGNISDVFSNLYSLSELDLSFNSLTGDLPQSFTGLSSLKKVYLQNNQFTGNINVLANLPLETLNVANNHFTGWIPSQLKKINSLQTDGNSWST |
| superfamily: SSF52058 | 24-224 | L domain-like,LRR | GWQANGGDPCGQSWKGITCSGSGVTKIQLPNLSLTGNLAYNMNNLGSLVELDMSQNNLGGGGQVQYNLPNMKLEKLNLAGNQFGGNLPYSISTMPNLKYLNLNHNQLQGNISDVFSNLYSLSELDLSFNSLTGDLPQSFTGLSSLKKVYLQNNQFTGNINVLANLPLETLNVANNHFTGWIPSQLKKINSLQTDGNSWSTG |
| ProfileScan: PS51450 | 51-72 | LRR,Leucine-rich repeat profile. | QLPNLSLTGNLAYNMNNLGSLV |
| ProfileScan: PS51450 | 95-117 | LRR,Leucine-rich repeat profile. | KLEKLNLAGNQFGGNLPYSISTM |
| HMMPfam: PF00560 IPR001611
|
95-115 | LRR_1 Leucine-rich repeat
|
KLEKLNLAGNQFGGNLPYSIS |
| HMMSmart: SM00369 IPR003591
|
117-140 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
MPNLKYLNLNHNQLQGNISDVFSN |
| HMMPfam: PF13855 | 118-177 | LRR_8,Leucine rich repeat | PNLKYLNLNHNQLQGNISDVFSNLYSLSELDLSFNSLTGDLPQSFTGLSSLKKVYLQNNQ |
| ProfileScan: PS51450 | 119-141 | LRR,Leucine-rich repeat profile. | NLKYLNLNHNQLQGNISDVFSNL |
| HMMSmart: SM00369 IPR003591
|
141-164 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LYSLSELDLSFNSLTGDLPQSFTG |
| ProfileScan: PS51450 | 143-166 | LRR,Leucine-rich repeat profile. | SLSELDLSFNSLTGDLPQSFTGLS |
| HMMSmart: SM00369 IPR003591
|
165-195 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LSSLKKVYLQNNQFTGNINVLANLPLETLNV |
| ProfileScan: PS51450 | 167-189 | LRR,Leucine-rich repeat profile. | SLKKVYLQNNQFTGNINVLANLP |
| ProfileScan: PS51450 | 190-210 | LRR,Leucine-rich repeat profile. | LETLNVANNHFTGWIPSQLKK |
| Seg: seg | 225-239 | seg | PAPPPPPYTAPPPPP |
| Seg: seg | 246-278 | seg | GSSSSSSSGGRSGIGGGGVAGIIISLLVVGSVV |
| Seg: seg | 344-356 | seg | NKSFDDDDDFSNK |
| superfamily: SSF56112 IPR011009
|
354-663 | Protein kinase-like (PK-like) Protein kinase-like domain
|
SNKLVAKKSNITPINATVYSVADLQMATDSFSFDNLVGEGTFGRVYRAQFNDGKVLAIKKLDSTVMPFQSSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPLSWNTRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIPDAEFQAAEQSAGYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALVRLVQRAN |
| Gene3D: G3DSA:3.30.200.20 | 359-461 | no description | AKKSNITPINATVYSVADLQMATDSFSFDNLVGEGTFGRVYRAQFNDGKVLAIKKLDSTVMPFQSSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDF |
| ProfileScan: PS50011 IPR000719
|
384-658 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSFDNLVGEGTFGRVYRAQFNDGKVLAIKKLDSTVMPFQSSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPLSWNTRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIPDAEFQAAEQSAGYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALVRL |
| HMMSmart: SM00220 IPR002290
|
384-656 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FSFDNLVGEGTFGRVYRAQFNDGKVLAIKKLDSTVMPFQSSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPLSWNTRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIPDAEFQAAEQSAGYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQALV |
| HMMSmart: SM00219 IPR020635
|
384-655 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FSFDNLVGEGTFGRVYRAQFNDGKVLAIKKLDSTVMPFQSSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPLSWNTRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIPDAEFQAAEQSAGYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQAL |
| HMMPfam: PF07714 IPR001245
|
386-655 | Pkinase_Tyr Serine-threonine/tyrosine-protein kinase
|
FDNLVGEGTFGRVYRAQFNDGKVLAIKKLDSTVMPFQSSDDFAELVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDLLHLSDEYSKPLSWNTRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIPDAEFQAAEQSAGYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQAL |
| PatternScan: PS00107 IPR017441
|
390-413 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
VGEGTFGRVYRAQFNDGKVLAIKK |
| Gene3D: G3DSA:1.10.510.10 | 464-655 | no description | NGSLHDLLHLSDEYSKPLSWNTRIKIALGSARALEYLHEICSPSIIHKNFKSSNILLDSEFNPHLSDAGLASFIPDAEFQAAEQSAGYTAPEVDMTGQYTFKSDVYSFGVVMLELLTGRRPFDSSRPRSEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVLALCVQPEPEFRPPMSEVVQAL |
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